Wall clock time and date at job start Tue Mar 31 2020 23:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47292 * 2 1 4 4 C 1.34231 * 117.00372 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99792 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00139 * 180.02562 * 4 3 2 7 7 C 1.50696 * 109.47057 * 179.97438 * 6 4 3 8 8 C 1.33417 * 122.71570 * 124.94653 * 7 6 4 9 9 S 1.76172 * 108.06652 * 180.02562 * 8 7 6 10 10 C 1.70968 * 90.34489 * 0.02562 * 9 8 7 11 11 N 1.39006 * 124.94258 * 179.97438 * 10 9 8 12 12 C 1.34776 * 120.00092 * 0.03053 * 11 10 9 13 13 O 1.21578 * 120.00028 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99605 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99662 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47153 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47155 * 180.02562 * 16 15 14 18 18 C 1.50693 * 109.47118 * 180.02562 * 17 16 15 19 19 H 1.08007 * 120.00183 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00121 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00324 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00051 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46866 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.46998 * 120.00205 * 22 20 18 25 25 H 1.48497 * 109.46825 * 240.00081 * 22 20 18 26 26 N 1.29623 * 110.10783 * 359.97438 * 10 9 8 27 27 H 1.09008 * 109.46816 * 300.00136 * 1 2 3 28 28 H 1.08999 * 109.47455 * 59.99757 * 1 2 3 29 29 H 1.09000 * 109.47253 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46991 * 240.00098 * 2 1 3 31 31 H 1.08999 * 109.47455 * 120.00243 * 2 1 3 32 32 H 1.08991 * 109.47558 * 59.99500 * 6 4 3 33 33 H 1.09002 * 109.46818 * 299.99240 * 6 4 3 34 34 H 1.07992 * 125.96546 * 0.02562 * 8 7 6 35 35 H 0.97005 * 119.99898 * 180.02562 * 11 10 9 36 36 H 0.96995 * 120.00331 * 0.02562 * 14 12 11 37 37 H 1.08993 * 109.47380 * 300.00626 * 15 14 12 38 38 H 1.09000 * 109.46674 * 60.00502 * 15 14 12 39 39 H 1.08994 * 109.47188 * 300.00975 * 16 15 14 40 40 H 1.09002 * 109.46409 * 60.00371 * 16 15 14 41 41 H 1.09001 * 109.47202 * 300.00457 * 17 16 15 42 42 H 1.09000 * 109.46703 * 60.00611 * 17 16 15 43 43 H 0.96994 * 120.00553 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4256 2.8585 -0.0001 8 6 6.1793 3.4633 -0.9200 9 16 7.8680 3.1185 -0.5555 10 6 7.3966 2.1915 0.8015 11 7 8.2712 1.5401 1.6635 12 6 9.6010 1.6147 1.4573 13 8 10.0356 2.2512 0.5171 14 7 10.4489 0.9835 2.2934 15 6 11.8944 1.0640 2.0689 16 6 12.6240 0.2667 3.1520 17 6 14.1336 0.3514 2.9180 18 6 14.8521 -0.4344 3.9844 19 1 14.2883 -0.9436 4.7521 20 6 16.2291 -0.5032 3.9800 21 7 16.9156 0.1172 3.0456 22 14 17.1198 -1.4767 5.3024 23 1 16.1265 -2.0756 6.2297 24 1 17.9186 -2.5563 4.6688 25 1 18.0221 -0.5724 6.0595 26 7 6.1049 2.1846 0.9095 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.5852 3.4691 0.8903 33 1 3.5844 3.4700 -0.8896 34 1 5.8173 4.0600 -1.7442 35 1 7.9244 1.0320 2.4135 36 1 10.1022 0.4753 3.0432 37 1 12.1336 0.6502 1.0893 38 1 12.2109 2.1062 2.1102 39 1 12.3846 0.6809 4.1314 40 1 12.3074 -0.7755 3.1111 41 1 14.3732 -0.0626 1.9385 42 1 14.4497 1.3937 2.9591 43 1 17.8844 0.0691 3.0427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171724774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:15 Heat of formation + Delta-G solvation = -78.830085 kcal Electronic energy + Delta-G solvation = -25491.483628 eV Core-core repulsion = 21470.763812 eV Total energy + Delta-G solvation = -4020.719817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.97688 -40.57945 -39.52013 -36.86760 -35.92874 -35.04467 -33.46819 -32.51322 -31.70443 -31.05456 -28.53312 -26.92242 -24.82307 -23.78738 -22.99811 -21.72725 -21.55728 -20.79198 -20.04820 -18.51260 -18.04633 -17.76145 -17.19967 -16.84866 -16.39852 -16.28080 -16.05706 -15.33500 -14.87412 -14.62324 -14.52279 -14.37235 -14.26916 -14.01963 -13.48950 -13.25653 -13.12234 -12.96642 -12.35700 -12.19337 -11.99343 -11.94395 -11.91751 -11.70404 -11.07288 -10.95236 -10.88088 -10.82029 -10.67720 -10.60537 -10.27753 -9.96157 -9.79673 -9.53835 -9.24733 -9.16957 -9.13454 -8.41475 -8.30275 -6.05870 -4.09168 0.67862 1.07667 1.74246 1.99305 2.11658 2.23277 2.65133 3.08986 3.27645 3.35454 3.38671 3.84332 4.15539 4.41348 4.47821 4.50951 4.60324 4.65619 4.85994 4.94132 5.10193 5.27272 5.30288 5.33173 5.34755 5.50491 5.52409 5.61895 5.66816 6.00477 6.05727 6.16168 6.22399 6.36927 6.49811 6.73998 6.90677 7.50287 7.52665 7.58346 7.69655 7.73084 7.92287 8.17179 8.33166 8.97519 9.55501 11.05372 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.001619 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.697353 B =17295.283873 C =18349.071970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.363 6.363 4 C 0.462 3.538 5 O -0.485 6.485 6 C -0.032 4.032 7 C 0.096 3.904 8 C -0.321 4.321 9 S 0.263 5.737 10 C 0.272 3.728 11 N -0.639 5.639 12 C 0.700 3.300 13 O -0.559 6.559 14 N -0.722 5.722 15 C 0.132 3.868 16 C -0.122 4.122 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.056 0.944 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 N -0.504 5.504 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.175 0.825 35 H 0.419 0.581 36 H 0.401 0.599 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.386 5.966 -7.304 33.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.281 6.281 4 C 0.303 3.697 5 O -0.370 6.370 6 C -0.072 4.072 7 C -0.038 4.038 8 C -0.462 4.462 9 S 0.514 5.486 10 C -0.097 4.097 11 N -0.291 5.291 12 C 0.398 3.602 13 O -0.436 6.436 14 N -0.376 5.376 15 C 0.009 3.991 16 C -0.160 4.160 17 C -0.014 4.014 18 C -0.562 4.562 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 N -0.227 5.227 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.193 0.807 35 H 0.257 0.743 36 H 0.235 0.765 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -30.682 6.154 -8.155 32.339 hybrid contribution -0.714 -1.295 1.587 2.169 sum -31.396 4.859 -6.568 32.442 Atomic orbital electron populations 1.21808 0.92603 1.03014 1.03495 1.23002 0.95269 0.80166 1.02680 1.86475 1.24616 1.32494 1.84539 1.23423 0.80457 0.92631 0.73235 1.90725 1.60175 1.42741 1.43369 1.19791 0.88744 0.91967 1.06714 1.18852 0.94927 0.97672 0.92354 1.27245 0.99679 1.12198 1.07078 1.85166 1.00890 1.42908 1.19608 1.23026 0.90098 0.99685 0.96883 1.41865 1.04048 1.52737 1.30440 1.15891 0.79583 0.81063 0.83636 1.90865 1.74862 1.46162 1.31687 1.45353 1.07692 1.53979 1.30550 1.21721 0.74720 1.01806 1.00814 1.21926 0.99456 0.98394 0.96198 1.19034 0.87095 0.97709 0.97536 1.21223 0.91457 1.31636 1.11864 0.92567 1.25022 0.97769 0.95686 0.95919 1.69965 1.06795 1.43004 1.33406 0.86526 0.79742 0.79867 0.81795 1.19765 1.20984 1.20976 1.65965 1.03245 1.23905 1.29552 0.91449 0.91481 0.90236 0.91297 0.91206 0.86173 0.86020 0.80717 0.74324 0.76473 0.91254 0.91241 0.92526 0.92529 0.96145 0.96136 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.29 37.16 0.38 -0.30 16 2 C 0.06 0.45 6.19 37.16 0.23 0.68 16 3 O -0.36 -3.17 10.22 -39.26 -0.40 -3.57 16 4 C 0.46 4.73 7.92 36.01 0.29 5.02 16 5 O -0.49 -6.84 15.19 -18.75 -0.28 -7.12 16 6 C -0.03 -0.24 6.30 -29.04 -0.18 -0.42 16 7 C 0.10 1.04 5.63 -84.20 -0.47 0.57 16 8 C -0.32 -3.14 11.05 29.05 0.32 -2.82 16 9 S 0.26 3.26 20.21 -107.50 -2.17 1.09 16 10 C 0.27 3.65 8.19 -87.35 -0.72 2.93 16 11 N -0.64 -7.81 5.41 -17.48 -0.09 -7.90 16 12 C 0.70 9.96 8.53 -86.92 -0.74 9.22 16 13 O -0.56 -9.56 13.81 5.30 0.07 -9.49 16 14 N -0.72 -9.48 5.56 -65.22 -0.36 -9.85 16 15 C 0.13 2.13 5.67 -4.04 -0.02 2.11 16 16 C -0.12 -2.24 5.27 -26.73 -0.14 -2.38 16 17 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 18 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 19 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 22 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 26 N -0.50 -6.70 9.73 -11.28 -0.11 -6.81 16 27 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.51 8.13 -51.93 -0.42 0.08 16 31 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 32 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.12 0.50 8.03 -51.93 -0.42 0.09 16 34 H 0.18 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.42 4.02 8.83 -40.82 -0.36 3.66 16 36 H 0.40 4.08 8.49 -40.82 -0.35 3.74 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 386.01 15.07 5.82 5.82 Total: -1.00 -35.14 386.01 -9.59 -44.73 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.16 Total: 0.57 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.61 Total: 1.97 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.17 Total: -50.18 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.61 Total: -20.18 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -2.17 Total: 1.09 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.14 -9.59 -44.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171724774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.102 kcal (2) G-P(sol) polarization free energy of solvation -35.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds