Wall clock time and date at job start Tue Mar 31 2020 23:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21280 * 120.00065 * 2 1 4 4 N 1.34770 * 119.99730 * 179.97438 * 2 1 3 5 5 C 1.46509 * 119.99634 * 174.90462 * 4 2 1 6 6 H 1.09004 * 109.47073 * 184.80646 * 5 4 2 7 7 C 1.52995 * 109.47252 * 64.80838 * 5 4 2 8 8 C 1.50701 * 109.47234 * 64.99376 * 7 5 4 9 9 O 1.20823 * 119.99995 * 0.02562 * 8 7 5 10 10 O 1.34231 * 120.00129 * 179.97438 * 8 7 5 11 11 C 1.45199 * 117.00129 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47223 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.47039 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00332 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99760 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99789 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99944 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47302 * 89.99558 * 17 15 13 19 19 H 1.48499 * 109.46891 * 209.99913 * 17 15 13 20 20 H 1.48504 * 109.47126 * 329.99450 * 17 15 13 21 21 C 1.50694 * 109.47093 * 304.80320 * 5 4 2 22 22 C 1.38240 * 119.98542 * 105.55560 * 21 5 4 23 23 C 1.38182 * 120.05292 * 179.76650 * 22 21 5 24 24 C 1.38501 * 120.02416 * 0.51089 * 23 22 21 25 25 F 1.35095 * 120.01551 * 179.76719 * 24 23 22 26 26 C 1.38398 * 119.97259 * 359.74658 * 24 23 22 27 27 C 1.38441 * 119.95125 * 359.97438 * 26 24 23 28 28 F 1.35106 * 120.01331 * 180.02562 * 27 26 24 29 29 H 1.08993 * 109.47550 * 240.00182 * 1 2 3 30 30 H 1.08998 * 109.47259 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47122 * 120.00386 * 1 2 3 32 32 H 0.97003 * 120.00701 * 354.63150 * 4 2 1 33 33 H 1.08995 * 109.47270 * 184.99712 * 7 5 4 34 34 H 1.09006 * 109.46966 * 305.00210 * 7 5 4 35 35 H 1.09003 * 109.47194 * 300.00644 * 11 10 8 36 36 H 1.09000 * 109.46829 * 60.00275 * 11 10 8 37 37 H 1.09008 * 109.46469 * 299.99858 * 12 11 10 38 38 H 1.08998 * 109.47000 * 59.99835 * 12 11 10 39 39 H 0.96993 * 120.00130 * 180.02562 * 16 15 13 40 40 H 1.08002 * 119.97043 * 0.02562 * 22 21 5 41 41 H 1.07997 * 119.98972 * 180.25440 * 23 22 21 42 42 H 1.08003 * 120.02619 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6415 -1.1697 -0.1122 6 1 3.9989 -2.1973 -0.1800 7 6 4.2494 -0.4987 1.1211 8 6 3.9423 -1.3235 2.3444 9 8 3.3033 -2.3437 2.2404 10 8 4.3796 -0.9254 3.5494 11 6 4.0472 -1.7694 4.6832 12 6 4.6256 -1.1582 5.9610 13 6 4.2810 -2.0345 7.1376 14 1 3.7066 -2.9369 6.9891 15 6 4.6992 -1.6841 8.4040 16 7 4.3981 -2.4486 9.4308 17 14 5.6921 -0.1229 8.6611 18 1 4.7709 1.0126 8.9205 19 1 6.5999 -0.2994 9.8230 20 1 6.4950 0.1592 7.4441 21 6 4.0512 -0.4128 -1.3491 22 6 4.5967 0.8524 -1.2360 23 6 4.9774 1.5457 -2.3691 24 6 4.8029 0.9780 -3.6203 25 9 5.1707 1.6579 -4.7281 26 6 4.2519 -0.2864 -3.7351 27 6 3.8763 -0.9824 -2.5988 28 9 3.3388 -2.2170 -2.7094 29 1 -0.3634 -0.5138 0.8899 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.6990 -2.0054 0.0795 33 1 5.3294 -0.4208 0.9971 34 1 3.8242 0.4981 1.2391 35 1 2.9636 -1.8445 4.7749 36 1 4.4688 -2.7632 4.5323 37 1 5.7092 -1.0828 5.8694 38 1 4.2037 -0.1645 6.1117 39 1 4.6919 -2.2019 10.3217 40 1 4.7294 1.2975 -0.2610 41 1 5.4072 2.5324 -2.2792 42 1 4.1158 -0.7301 -4.7103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175489101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:07 Heat of formation + Delta-G solvation = -193.687109 kcal Electronic energy + Delta-G solvation = -29418.189753 eV Core-core repulsion = 24806.356224 eV Total energy + Delta-G solvation = -4611.833529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.38217 -49.36190 -40.90757 -39.71528 -38.84353 -36.52047 -35.33027 -33.35858 -32.65903 -31.13681 -30.91057 -29.90293 -29.33039 -25.69696 -24.73489 -23.47239 -22.28455 -21.13915 -20.64375 -19.90343 -18.69912 -17.93829 -17.60494 -17.34740 -16.91230 -16.46185 -16.34888 -16.21402 -16.09802 -15.70219 -15.54073 -15.34308 -15.12356 -14.73141 -14.29391 -14.18732 -14.02244 -13.60083 -13.43623 -13.01060 -12.81686 -12.72875 -12.48383 -12.45049 -12.34117 -12.13670 -11.89504 -11.62846 -11.49817 -11.30188 -10.73095 -10.62030 -10.10989 -10.01269 -9.94783 -9.74752 -9.46693 -9.38854 -9.36935 -9.00555 -8.65246 -6.15906 -4.17335 0.49520 0.65500 2.40745 2.44653 2.78785 2.95483 3.22918 3.26062 3.33545 3.37729 3.46484 3.99879 4.09654 4.17462 4.36103 4.42296 4.55320 4.66034 4.73283 4.90649 5.04124 5.12122 5.16720 5.17739 5.23820 5.39666 5.44463 5.49831 5.54155 5.62448 5.70249 5.85688 5.91610 5.92046 6.14577 6.35748 6.40422 6.74650 7.14852 7.18077 7.29265 7.59070 7.98730 8.05815 8.36255 8.85315 9.43657 10.96608 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017283 B = 0.002392 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.713276 B =11704.900040 C =12232.913059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.512 3.488 3 O -0.540 6.540 4 N -0.716 5.716 5 C 0.209 3.791 6 H 0.112 0.888 7 C -0.141 4.141 8 C 0.462 3.538 9 O -0.516 6.516 10 O -0.360 6.360 11 C 0.084 3.916 12 C -0.010 4.010 13 C -0.528 4.528 14 H 0.075 0.925 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.881 3.119 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.263 1.263 21 C -0.142 4.142 22 C -0.020 4.020 23 C -0.166 4.166 24 C 0.133 3.867 25 F -0.133 7.133 26 C -0.200 4.200 27 C 0.145 3.855 28 F -0.127 7.127 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.411 0.589 33 H 0.116 0.884 34 H 0.127 0.873 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.028 0.972 38 H 0.023 0.977 39 H 0.266 0.734 40 H 0.151 0.849 41 H 0.144 0.856 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.506 5.987 -28.254 28.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.300 3.700 3 O -0.418 6.418 4 N -0.368 5.368 5 C 0.104 3.896 6 H 0.130 0.870 7 C -0.179 4.179 8 C 0.305 3.695 9 O -0.406 6.406 10 O -0.277 6.277 11 C 0.011 3.989 12 C -0.047 4.047 13 C -0.566 4.566 14 H 0.093 0.907 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.708 3.292 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.187 1.187 21 C -0.144 4.144 22 C -0.039 4.039 23 C -0.185 4.185 24 C 0.114 3.886 25 F -0.111 7.111 26 C -0.220 4.220 27 C 0.125 3.875 28 F -0.106 7.106 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.247 0.753 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.169 0.831 41 H 0.162 0.838 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.267 6.370 -28.084 28.886 hybrid contribution 0.098 0.059 0.122 0.167 sum -2.169 6.429 -27.961 28.773 Atomic orbital electron populations 1.21926 0.91679 1.05542 1.04378 1.20864 0.90766 0.83420 0.74974 1.90663 1.70606 1.31355 1.49142 1.45992 1.06320 1.09645 1.74888 1.19333 0.81089 0.99823 0.89390 0.87001 1.21967 1.04298 1.01919 0.89711 1.23272 0.76465 0.84321 0.85469 1.90605 1.37613 1.25306 1.87030 1.86488 1.70971 1.53705 1.16495 1.23379 1.00469 0.92909 0.82118 1.19629 0.97114 0.97334 0.90639 1.20830 1.36210 1.09605 0.89952 0.90686 1.24940 0.95458 0.96899 0.95715 1.69890 1.46012 1.38098 0.99455 0.86747 0.80644 0.83632 0.78163 1.20038 1.21154 1.18747 1.20015 1.04222 0.96973 0.93219 1.20951 0.92061 0.91454 0.99410 1.21248 1.04370 1.02206 0.90626 1.17352 0.98068 0.90283 0.82932 1.91533 1.89073 1.79180 1.51310 1.20944 1.06085 0.95394 0.99537 1.17060 0.96683 0.80907 0.92844 1.91536 1.83208 1.39012 1.96821 0.89167 0.88930 0.89508 0.75336 0.86642 0.85484 0.91806 0.91667 0.95379 0.95830 0.92404 0.83145 0.83808 0.83483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 10.32 36.00 0.37 -0.90 16 2 C 0.51 5.32 7.34 -10.99 -0.08 5.23 16 3 O -0.54 -6.96 13.14 5.56 0.07 -6.89 16 4 N -0.72 -6.87 4.39 -54.93 -0.24 -7.12 16 5 C 0.21 2.06 2.08 -69.08 -0.14 1.91 16 6 H 0.11 1.07 7.91 -51.93 -0.41 0.66 16 7 C -0.14 -1.54 3.94 -27.88 -0.11 -1.65 16 8 C 0.46 7.07 7.82 36.01 0.28 7.35 16 9 O -0.52 -8.64 15.10 -18.75 -0.28 -8.92 16 10 O -0.36 -6.57 10.22 -39.26 -0.40 -6.97 16 11 C 0.08 1.74 5.40 37.16 0.20 1.94 16 12 C -0.01 -0.23 4.42 -27.88 -0.12 -0.36 16 13 C -0.53 -14.85 9.66 -34.44 -0.33 -15.18 16 14 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 15 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 17 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 21 C -0.14 -1.32 4.38 -104.55 -0.46 -1.78 16 22 C -0.02 -0.18 7.47 -39.60 -0.30 -0.47 16 23 C -0.17 -1.35 10.03 -39.50 -0.40 -1.75 16 24 C 0.13 1.16 7.30 -39.43 -0.29 0.88 16 25 F -0.13 -1.22 17.27 2.25 0.04 -1.18 16 26 C -0.20 -1.69 10.01 -39.45 -0.39 -2.08 16 27 C 0.15 1.33 7.24 -39.43 -0.29 1.05 16 28 F -0.13 -1.21 16.77 2.25 0.04 -1.17 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.68 8.12 -51.93 -0.42 0.25 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.41 3.41 8.83 -40.82 -0.36 3.05 16 33 H 0.12 0.99 7.89 -51.93 -0.41 0.58 16 34 H 0.13 1.46 5.32 -51.93 -0.28 1.19 16 35 H 0.06 1.34 8.13 -51.93 -0.42 0.91 16 36 H 0.06 1.36 8.13 -51.93 -0.42 0.93 16 37 H 0.03 0.66 7.20 -51.92 -0.37 0.29 16 38 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.15 1.22 6.00 -52.49 -0.32 0.91 16 41 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -32.96 365.78 -6.39 -39.36 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.08 Total: 0.97 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.15 Total: -3.83 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.53 Total: -33.47 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.61 Total: -22.78 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.08 Total: -2.35 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.96 -6.39 -39.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175489101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.330 kcal (2) G-P(sol) polarization free energy of solvation -32.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds