Wall clock time and date at job start Tue Mar 31 2020 23:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47132 * 2 1 4 4 C 1.50701 * 109.47217 * 119.99957 * 2 1 3 5 5 H 1.07994 * 120.00142 * 120.00250 * 4 2 1 6 6 C 1.37876 * 119.99771 * 299.99836 * 4 2 1 7 7 N 1.31513 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99896 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46892 * 60.00069 * 8 6 4 10 10 H 1.48495 * 109.47210 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47263 * 300.00581 * 8 6 4 12 12 N 1.46501 * 109.47198 * 240.00314 * 2 1 3 13 13 C 1.46500 * 119.99539 * 299.99658 * 12 2 1 14 14 C 1.34773 * 120.00409 * 120.00264 * 12 2 1 15 15 O 1.21563 * 119.99825 * 4.83927 * 14 12 2 16 16 C 1.47834 * 120.00234 * 184.84660 * 14 12 2 17 17 C 1.40026 * 120.56269 * 141.37983 * 16 14 12 18 18 C 1.38350 * 118.29011 * 179.75350 * 17 16 14 19 19 C 1.38353 * 119.30403 * 0.54770 * 18 17 16 20 20 S 1.76198 * 119.46514 * 179.70770 * 19 18 17 21 21 O 1.42101 * 106.40064 * 23.26702 * 20 19 18 22 22 O 1.42094 * 106.40492 * 156.19132 * 20 19 18 23 23 N 1.65602 * 107.21896 * 269.73466 * 20 19 18 24 24 C 1.46498 * 120.00331 * 89.99595 * 23 20 19 25 25 C 1.46499 * 119.99489 * 269.99559 * 23 20 19 26 26 N 1.31932 * 121.07775 * 359.43534 * 19 18 17 27 27 C 1.31698 * 121.87530 * 0.27311 * 26 19 18 28 28 H 1.09001 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47185 * 299.99933 * 1 2 3 30 30 H 1.08995 * 109.47269 * 59.99869 * 1 2 3 31 31 H 0.96998 * 120.00225 * 179.97438 * 7 6 4 32 32 H 1.09009 * 109.47255 * 265.07687 * 13 12 2 33 33 H 1.08996 * 109.47369 * 25.07934 * 13 12 2 34 34 H 1.08998 * 109.46796 * 145.08260 * 13 12 2 35 35 H 1.08003 * 120.85248 * 0.02562 * 17 16 14 36 36 H 1.08005 * 120.35118 * 180.25644 * 18 17 16 37 37 H 1.09003 * 109.46938 * 89.99813 * 24 23 20 38 38 H 1.08997 * 109.46973 * 210.00018 * 24 23 20 39 39 H 1.09004 * 109.47091 * 329.99968 * 24 23 20 40 40 H 1.08998 * 109.47412 * 359.97438 * 25 23 20 41 41 H 1.09005 * 109.47333 * 120.00143 * 25 23 20 42 42 H 1.09005 * 109.47119 * 239.99738 * 25 23 20 43 43 H 1.08004 * 119.71112 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.8064 -1.1208 4.0082 10 1 1.8260 -0.4205 5.2204 11 1 1.8259 -2.5202 4.0078 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1596 1.0995 -1.8486 16 6 3.1974 -0.6975 -3.3419 17 6 3.2532 0.0249 -4.5402 18 6 3.6425 -0.6402 -5.6892 19 6 3.9502 -1.9873 -5.6206 20 16 4.4390 -2.8403 -7.0828 21 8 4.9413 -1.8538 -7.9738 22 8 5.1993 -3.9628 -6.6574 23 7 3.0641 -3.4441 -7.7809 24 6 2.3250 -2.6407 -8.7579 25 6 2.5869 -4.7817 -7.4215 26 7 3.8887 -2.6425 -4.4771 27 6 3.5294 -2.0525 -3.3559 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 0.7090 1.1615 3.4844 32 1 2.4589 -2.7359 -1.0486 33 1 0.7329 -2.3231 -0.9108 34 1 1.5382 -2.2641 -2.4971 35 1 3.0030 1.0752 -4.5659 36 1 3.7011 -0.1144 -6.6308 37 1 2.7046 -2.8461 -9.7588 38 1 1.2663 -2.8957 -8.7114 39 1 2.4542 -1.5825 -8.5303 40 1 3.2607 -5.2227 -6.6869 41 1 1.5851 -4.7086 -6.9983 42 1 2.5600 -5.4094 -8.3123 43 1 3.4914 -2.6225 -2.4393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184406776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:45 Heat of formation + Delta-G solvation = -47.234981 kcal Electronic energy + Delta-G solvation = -27849.542662 eV Core-core repulsion = 23830.192912 eV Total energy + Delta-G solvation = -4019.349750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -40.76789 -38.79668 -37.59355 -36.54876 -36.12665 -35.66811 -33.31232 -32.79576 -31.81807 -29.36155 -28.50377 -26.68089 -25.41617 -25.18781 -24.86328 -23.89861 -21.52554 -19.63222 -19.15808 -18.41612 -17.71712 -17.45445 -16.96306 -16.33335 -16.17213 -15.68115 -15.35143 -14.92599 -14.78771 -14.70582 -14.36152 -14.04570 -13.86857 -13.44671 -13.36938 -12.99329 -12.91935 -12.75755 -12.74177 -12.58016 -12.36374 -12.00240 -11.93330 -11.82915 -11.68431 -11.41228 -11.16108 -10.92155 -10.86720 -10.42414 -10.31433 -10.20535 -10.10922 -9.68111 -9.57232 -9.35468 -9.20035 -8.53672 -7.86419 -6.17668 -4.26598 -0.11956 0.19495 0.90618 2.45718 2.89584 3.22683 3.28209 3.29592 3.31412 3.48630 3.59355 3.75651 4.30750 4.34672 4.37749 4.58051 4.61748 4.72321 4.82709 4.96544 5.00824 5.14063 5.18760 5.19727 5.34396 5.42830 5.46794 5.51814 5.54739 5.76320 5.80322 6.05957 6.07208 6.17358 6.60473 6.64748 6.87627 7.18046 7.28183 7.32013 7.57815 7.85440 8.02467 8.25755 8.58322 8.79069 9.40291 10.87741 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022672 B = 0.002621 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.719654 B =10681.019979 C =10921.902309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 H 0.066 0.934 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.578 5.578 13 C 0.075 3.925 14 C 0.541 3.459 15 O -0.533 6.533 16 C -0.109 4.109 17 C -0.045 4.045 18 C -0.091 4.091 19 C -0.446 4.446 20 S 2.703 3.297 21 O -0.947 6.947 22 O -0.932 6.932 23 N -1.001 6.001 24 C 0.090 3.910 25 C 0.085 3.915 26 N -0.393 5.393 27 C 0.103 3.897 28 H 0.032 0.968 29 H 0.097 0.903 30 H 0.012 0.988 31 H 0.265 0.735 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 -8.849 -21.237 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.159 3.841 3 H 0.084 0.916 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.308 5.308 13 C -0.069 4.069 14 C 0.326 3.674 15 O -0.412 6.412 16 C -0.114 4.114 17 C -0.072 4.072 18 C -0.112 4.112 19 C -0.665 4.665 20 S 2.788 3.212 21 O -0.936 6.936 22 O -0.921 6.921 23 N -0.841 5.841 24 C -0.055 4.055 25 C -0.060 4.060 26 N -0.103 5.103 27 C -0.058 4.058 28 H 0.051 0.949 29 H 0.115 0.885 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.172 0.828 36 H 0.174 0.826 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.036 -9.104 -21.235 23.104 hybrid contribution -0.510 0.743 1.539 1.784 sum -0.474 -8.361 -19.695 21.402 Atomic orbital electron populations 1.22122 0.97842 0.99610 1.01083 1.19070 0.91029 0.94563 0.79481 0.91636 1.21238 1.32305 1.13230 0.90101 0.92137 1.24886 0.94792 0.94923 0.99032 1.69853 1.36080 1.22463 1.24101 0.86514 0.79323 0.79566 0.81771 1.20146 1.21110 1.20128 1.48267 1.47728 1.11715 1.23118 1.21970 1.02191 0.82956 0.99764 1.18002 0.80286 0.86182 0.82958 1.90792 1.54960 1.18173 1.77239 1.21702 0.98024 0.95613 0.96073 1.21811 0.93734 1.01016 0.90630 1.21910 0.94932 0.93822 1.00586 1.33767 1.12552 1.04222 1.15916 1.02169 0.72857 0.73442 0.72688 1.93616 1.76567 1.61665 1.61761 1.93593 1.66149 1.50142 1.82257 1.57310 1.46953 1.25381 1.54454 1.21552 0.97398 0.94741 0.91843 1.21651 1.01010 0.81572 1.01797 1.67827 1.07626 1.37553 0.97286 1.23845 0.93060 0.91604 0.97336 0.94885 0.88480 0.96901 0.92468 0.92437 0.89804 0.92714 0.82753 0.82570 0.91790 0.90576 0.90890 0.88963 0.91888 0.91399 0.80033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.96 37.15 0.33 -3.00 16 2 C 0.26 6.26 2.63 -69.08 -0.18 6.08 16 3 H 0.07 1.85 6.91 -51.93 -0.36 1.49 16 4 C -0.53 -13.75 8.37 -34.44 -0.29 -14.04 16 5 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.28 11.32 55.43 0.63 -23.65 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.58 -11.61 2.75 -176.38 -0.49 -12.10 16 13 C 0.07 1.16 8.09 59.85 0.48 1.64 16 14 C 0.54 10.76 7.38 -12.34 -0.09 10.67 16 15 O -0.53 -12.65 16.27 5.31 0.09 -12.56 16 16 C -0.11 -1.71 5.26 -104.83 -0.55 -2.26 16 17 C -0.04 -0.60 9.79 -38.87 -0.38 -0.98 16 18 C -0.09 -1.04 9.54 -39.50 -0.38 -1.42 16 19 C -0.45 -5.60 6.86 -17.47 -0.12 -5.72 16 20 S 2.70 30.51 5.70 -107.50 -0.61 29.90 16 21 O -0.95 -11.79 16.31 -57.17 -0.93 -12.73 16 22 O -0.93 -13.13 16.41 -57.17 -0.94 -14.07 16 23 N -1.00 -8.03 3.58 -129.20 -0.46 -8.49 16 24 C 0.09 0.50 10.33 59.85 0.62 1.12 16 25 C 0.08 0.56 10.67 59.85 0.64 1.20 16 26 N -0.39 -5.53 10.09 -12.11 -0.12 -5.65 16 27 C 0.10 1.48 8.76 -17.13 -0.15 1.33 16 28 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 29 H 0.10 2.42 6.07 -51.93 -0.32 2.11 16 30 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.06 0.82 6.88 -51.92 -0.36 0.46 16 33 H 0.08 1.31 6.44 -51.93 -0.33 0.97 16 34 H 0.05 0.70 5.83 -51.93 -0.30 0.40 16 35 H 0.15 1.85 8.06 -52.48 -0.42 1.43 16 36 H 0.16 1.31 7.59 -52.48 -0.40 0.91 16 37 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.28 8.07 -51.93 -0.42 -0.13 16 39 H 0.07 0.36 7.79 -51.93 -0.40 -0.04 16 40 H 0.09 0.70 6.91 -51.93 -0.36 0.34 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.18 2.37 5.25 -52.48 -0.28 2.10 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -34.15 366.22 -8.02 -42.18 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.52 Total: -0.09 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -0.16 Total: -3.72 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.44 Total: -49.89 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.78 Total: -39.35 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 30.51 SS G_CDS: -0.61 Total: 29.90 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.15 -8.02 -42.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184406776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.059 kcal (2) G-P(sol) polarization free energy of solvation -34.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds