Wall clock time and date at job start Tue Mar 31 2020 23:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47132 * 2 1 4 4 C 1.50701 * 109.47217 * 119.99957 * 2 1 3 5 5 H 1.07994 * 120.00142 * 120.00250 * 4 2 1 6 6 C 1.37876 * 119.99771 * 299.99836 * 4 2 1 7 7 N 1.31513 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99896 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46892 * 60.00069 * 8 6 4 10 10 H 1.48495 * 109.47210 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47263 * 300.00581 * 8 6 4 12 12 N 1.46501 * 109.47198 * 240.00314 * 2 1 3 13 13 C 1.46500 * 119.99539 * 299.99658 * 12 2 1 14 14 C 1.34773 * 120.00409 * 120.00264 * 12 2 1 15 15 O 1.21563 * 119.99825 * 4.83927 * 14 12 2 16 16 C 1.47834 * 120.00234 * 184.84660 * 14 12 2 17 17 C 1.40026 * 120.56269 * 141.37983 * 16 14 12 18 18 C 1.38350 * 118.29011 * 179.75350 * 17 16 14 19 19 C 1.38353 * 119.30403 * 0.54770 * 18 17 16 20 20 S 1.76198 * 119.46514 * 179.70770 * 19 18 17 21 21 O 1.42101 * 106.40064 * 23.26702 * 20 19 18 22 22 O 1.42094 * 106.40492 * 156.19132 * 20 19 18 23 23 N 1.65602 * 107.21896 * 269.73466 * 20 19 18 24 24 C 1.46498 * 120.00331 * 89.99595 * 23 20 19 25 25 C 1.46499 * 119.99489 * 269.99559 * 23 20 19 26 26 N 1.31932 * 121.07775 * 359.43534 * 19 18 17 27 27 C 1.31698 * 121.87530 * 0.27311 * 26 19 18 28 28 H 1.09001 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47185 * 299.99933 * 1 2 3 30 30 H 1.08995 * 109.47269 * 59.99869 * 1 2 3 31 31 H 0.96998 * 120.00225 * 179.97438 * 7 6 4 32 32 H 1.09009 * 109.47255 * 265.07687 * 13 12 2 33 33 H 1.08996 * 109.47369 * 25.07934 * 13 12 2 34 34 H 1.08998 * 109.46796 * 145.08260 * 13 12 2 35 35 H 1.08003 * 120.85248 * 0.02562 * 17 16 14 36 36 H 1.08005 * 120.35118 * 180.25644 * 18 17 16 37 37 H 1.09003 * 109.46938 * 89.99813 * 24 23 20 38 38 H 1.08997 * 109.46973 * 210.00018 * 24 23 20 39 39 H 1.09004 * 109.47091 * 329.99968 * 24 23 20 40 40 H 1.08998 * 109.47412 * 359.97438 * 25 23 20 41 41 H 1.09005 * 109.47333 * 120.00143 * 25 23 20 42 42 H 1.09005 * 109.47119 * 239.99738 * 25 23 20 43 43 H 1.08004 * 119.71112 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.8064 -1.1208 4.0082 10 1 1.8260 -0.4205 5.2204 11 1 1.8259 -2.5202 4.0078 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1596 1.0995 -1.8486 16 6 3.1974 -0.6975 -3.3419 17 6 3.2532 0.0249 -4.5402 18 6 3.6425 -0.6402 -5.6892 19 6 3.9502 -1.9873 -5.6206 20 16 4.4390 -2.8403 -7.0828 21 8 4.9413 -1.8538 -7.9738 22 8 5.1993 -3.9628 -6.6574 23 7 3.0641 -3.4441 -7.7809 24 6 2.3250 -2.6407 -8.7579 25 6 2.5869 -4.7817 -7.4215 26 7 3.8887 -2.6425 -4.4771 27 6 3.5294 -2.0525 -3.3559 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 0.7090 1.1615 3.4844 32 1 2.4589 -2.7359 -1.0486 33 1 0.7329 -2.3231 -0.9108 34 1 1.5382 -2.2641 -2.4971 35 1 3.0030 1.0752 -4.5659 36 1 3.7011 -0.1144 -6.6308 37 1 2.7046 -2.8461 -9.7588 38 1 1.2663 -2.8957 -8.7114 39 1 2.4542 -1.5825 -8.5303 40 1 3.2607 -5.2227 -6.6869 41 1 1.5851 -4.7086 -6.9983 42 1 2.5600 -5.4094 -8.3123 43 1 3.4914 -2.6225 -2.4393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184406776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:44 Heat of formation + Delta-G solvation = -72.919489 kcal Electronic energy + Delta-G solvation = -27850.656426 eV Core-core repulsion = 23830.192912 eV Total energy + Delta-G solvation = -4020.463514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.98227 -40.24024 -38.53831 -37.36930 -37.18807 -37.01111 -35.06857 -33.90946 -33.16048 -31.05887 -28.95529 -28.05748 -27.33761 -26.35069 -25.55939 -24.96074 -23.14859 -20.71364 -20.52140 -19.25865 -18.82312 -18.54750 -18.49941 -17.81897 -17.38075 -16.93831 -16.57738 -16.24050 -15.94527 -15.55958 -15.42271 -15.21422 -15.11285 -14.65062 -14.47526 -14.37928 -14.07340 -13.91761 -13.53425 -13.52600 -13.38998 -13.24713 -13.13218 -12.98627 -12.77923 -12.74487 -12.65249 -12.57029 -12.43614 -12.20676 -12.17580 -11.40696 -11.29654 -11.22912 -10.77866 -10.70175 -10.53694 -10.09166 -9.52331 -8.17823 -6.34322 -1.08165 -0.79911 -0.13055 1.40513 1.43394 1.44308 1.51159 1.78624 2.01660 2.27942 2.42455 2.54297 2.78443 3.11041 3.29647 3.44530 3.55249 3.75534 3.77872 3.83062 4.20593 4.24791 4.45759 4.51723 4.56542 4.62994 4.70101 4.73671 4.79727 4.84529 4.93214 4.97592 4.98944 5.03104 5.06160 5.11123 5.39392 5.49693 5.51184 5.60967 5.95274 6.10065 6.24087 6.57067 6.71438 7.06780 7.37583 8.86530 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022672 B = 0.002621 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.719654 B =10681.019979 C =10921.902309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.262 3.738 3 H 0.014 0.986 4 C -0.542 4.542 5 H 0.063 0.937 6 C 0.019 3.981 7 N -0.916 5.916 8 Si 0.963 3.037 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.261 1.261 12 N -0.584 5.584 13 C 0.071 3.929 14 C 0.539 3.461 15 O -0.585 6.585 16 C -0.127 4.127 17 C -0.042 4.042 18 C -0.081 4.081 19 C -0.446 4.446 20 S 2.717 3.283 21 O -0.958 6.958 22 O -0.962 6.962 23 N -0.993 5.993 24 C 0.076 3.924 25 C 0.076 3.924 26 N -0.404 5.404 27 C 0.106 3.894 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.023 0.977 31 H 0.265 0.735 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.164 0.836 36 H 0.191 0.809 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.551 -10.774 -23.179 25.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.161 3.839 3 H 0.032 0.968 4 C -0.581 4.581 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.788 3.212 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.186 1.186 12 N -0.313 5.313 13 C -0.071 4.071 14 C 0.326 3.674 15 O -0.467 6.467 16 C -0.132 4.132 17 C -0.069 4.069 18 C -0.101 4.101 19 C -0.664 4.664 20 S 2.801 3.199 21 O -0.948 6.948 22 O -0.952 6.952 23 N -0.835 5.835 24 C -0.068 4.068 25 C -0.068 4.068 26 N -0.114 5.114 27 C -0.056 4.056 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.182 0.818 36 H 0.209 0.791 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.461 -11.068 -23.186 25.697 hybrid contribution -0.366 1.327 1.978 2.410 sum -0.827 -9.740 -21.208 23.353 Atomic orbital electron populations 1.21906 0.96557 1.00502 1.00307 1.18663 0.91932 0.92313 0.81003 0.96809 1.21534 1.32261 1.13303 0.90978 0.91856 1.25687 0.94970 0.95573 1.01915 1.69994 1.37098 1.23722 1.24620 0.85536 0.78348 0.79109 0.78204 1.20459 1.20983 1.18551 1.48207 1.47640 1.13400 1.22011 1.22227 1.02622 0.80315 1.01922 1.18562 0.79259 0.85616 0.83970 1.90753 1.56880 1.20543 1.78498 1.21325 1.00837 0.96375 0.94708 1.22019 0.93006 1.01502 0.90381 1.22246 0.93335 0.93350 1.01219 1.34214 1.11211 1.04922 1.16007 1.01689 0.73400 0.72687 0.72105 1.93595 1.77477 1.62064 1.61632 1.93555 1.67842 1.51089 1.82728 1.57133 1.46453 1.25893 1.54047 1.21886 0.98476 0.94898 0.91538 1.21862 1.01400 0.80930 1.02638 1.67882 1.08132 1.37807 0.97550 1.23910 0.92770 0.90954 0.97931 0.93013 0.91082 0.95788 0.92530 0.91037 0.89763 0.89699 0.81839 0.79139 0.90821 0.88316 0.90184 0.90317 0.90212 0.89349 0.79187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.13 8.96 71.98 0.64 -5.48 16 2 C 0.26 13.10 2.63 44.24 0.12 13.21 16 3 H 0.01 0.84 6.91 -2.39 -0.02 0.82 16 4 C -0.54 -28.51 8.37 25.60 0.21 -28.29 16 5 H 0.06 3.21 7.65 -2.91 -0.02 3.18 16 6 C 0.02 0.99 5.30 84.65 0.45 1.44 16 7 N -0.92 -51.38 11.32 21.45 0.24 -51.14 16 8 Si 0.96 42.07 29.54 68.60 2.03 44.10 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 12 N -0.58 -23.64 2.75 -830.22 -2.29 -25.92 16 13 C 0.07 2.10 8.09 127.77 1.03 3.13 16 14 C 0.54 21.87 7.38 86.78 0.64 22.51 16 15 O -0.58 -29.04 16.27 -3.91 -0.06 -29.11 16 16 C -0.13 -3.90 5.26 -20.00 -0.11 -4.01 16 17 C -0.04 -1.05 9.79 22.73 0.22 -0.83 16 18 C -0.08 -1.64 9.54 22.32 0.21 -1.43 16 19 C -0.45 -10.23 6.86 84.71 0.58 -9.65 16 20 S 2.72 55.71 5.70 -56.49 -0.32 55.39 16 21 O -0.96 -21.64 16.31 -128.00 -2.09 -23.73 16 22 O -0.96 -25.97 16.41 -128.00 -2.10 -28.07 16 23 N -0.99 -13.07 3.58 -562.68 -2.02 -15.08 16 24 C 0.08 0.58 10.33 127.77 1.32 1.90 16 25 C 0.08 0.79 10.67 127.77 1.36 2.15 16 26 N -0.40 -10.65 10.09 -192.23 -1.94 -12.59 16 27 C 0.11 2.88 8.76 85.02 0.74 3.63 16 28 H 0.05 2.11 6.66 -2.39 -0.02 2.10 16 29 H 0.07 3.64 6.07 -2.38 -0.01 3.62 16 30 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.07 1.92 6.88 -2.38 -0.02 1.90 16 33 H 0.08 2.48 6.44 -2.39 -0.02 2.47 16 34 H 0.08 2.00 5.83 -2.39 -0.01 1.99 16 35 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 36 H 0.19 2.50 7.59 -2.91 -0.02 2.48 16 37 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.10 0.34 8.07 -2.39 -0.02 0.32 16 39 H 0.08 0.51 7.79 -2.39 -0.02 0.49 16 40 H 0.08 1.06 6.91 -2.39 -0.02 1.05 16 41 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 43 H 0.19 4.69 5.25 -2.91 -0.02 4.67 16 Total: -1.00 -76.18 366.22 -0.07 -76.24 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 1.04 Total: 11.63 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 7.44 Total: -1.72 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -6.00 Total: -104.73 kcal Atomic # 8 Polarization: -76.66 SS G_CDS: -4.25 Total: -80.91 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 55.71 SS G_CDS: -0.32 Total: 55.39 kcal Total: -76.18 -0.07 -76.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184406776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.323 kcal (2) G-P(sol) polarization free energy of solvation -76.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds