Wall clock time and date at job start Tue Mar 31 2020 23:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47412 * 2 1 4 4 C 1.50703 * 109.46880 * 240.00003 * 2 1 3 5 5 H 1.08001 * 120.00083 * 240.00243 * 4 2 1 6 6 C 1.37873 * 119.99753 * 60.00083 * 4 2 1 7 7 N 1.31512 * 120.00341 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99874 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47225 * 59.99795 * 8 6 4 10 10 H 1.48499 * 109.47317 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47275 * 299.99949 * 8 6 4 12 12 N 1.46495 * 109.47239 * 120.00343 * 2 1 3 13 13 C 1.46504 * 120.00243 * 59.99398 * 12 2 1 14 14 C 1.34772 * 120.00063 * 239.99736 * 12 2 1 15 15 O 1.21554 * 120.00284 * 4.84020 * 14 12 2 16 16 C 1.47843 * 120.00462 * 184.83647 * 14 12 2 17 17 C 1.40022 * 120.55983 * 141.35145 * 16 14 12 18 18 C 1.38360 * 118.28776 * 179.77560 * 17 16 14 19 19 C 1.38350 * 119.30191 * 0.47798 * 18 17 16 20 20 S 1.76198 * 119.46137 * 179.79416 * 19 18 17 21 21 O 1.42106 * 106.40283 * 23.25983 * 20 19 18 22 22 O 1.42095 * 106.40803 * 156.18462 * 20 19 18 23 23 N 1.65609 * 107.21661 * 269.72461 * 20 19 18 24 24 C 1.46500 * 119.99911 * 90.00014 * 23 20 19 25 25 C 1.46498 * 119.99754 * 269.99915 * 23 20 19 26 26 N 1.31924 * 121.07909 * 359.51071 * 19 18 17 27 27 C 1.31690 * 121.88372 * 0.25679 * 26 19 18 28 28 H 1.09000 * 109.47412 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47150 * 300.00143 * 1 2 3 30 30 H 1.08997 * 109.47305 * 59.99835 * 1 2 3 31 31 H 0.97003 * 119.99964 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47369 * 265.14279 * 13 12 2 33 33 H 1.09000 * 109.46619 * 25.14617 * 13 12 2 34 34 H 1.09006 * 109.46962 * 145.14196 * 13 12 2 35 35 H 1.08005 * 120.85578 * 0.02583 * 17 16 14 36 36 H 1.07994 * 120.34807 * 180.23905 * 18 17 16 37 37 H 1.08997 * 109.47132 * 89.99957 * 24 23 20 38 38 H 1.08999 * 109.46542 * 209.99919 * 24 23 20 39 39 H 1.09000 * 109.46887 * 329.99403 * 24 23 20 40 40 H 1.08994 * 109.47229 * 89.99555 * 25 23 20 41 41 H 1.09000 * 109.47260 * 210.00350 * 25 23 20 42 42 H 1.09000 * 109.46975 * 329.99716 * 25 23 20 43 43 H 1.08000 * 119.71876 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8267 -0.4199 -5.2205 11 1 3.8073 -1.1190 -4.0079 12 7 2.0183 -0.6907 1.1961 13 6 1.6643 -2.0932 1.4280 14 6 2.7932 -0.0358 2.0832 15 8 3.0146 1.1505 1.9375 16 6 3.3740 -0.7601 3.2338 17 6 4.6745 -0.4783 3.6695 18 6 5.1694 -1.1810 4.7538 19 6 4.3750 -2.1373 5.3606 20 16 5.0031 -3.0385 6.7383 21 8 6.0289 -2.2370 7.3082 22 8 3.8728 -3.4909 7.4710 23 7 5.7457 -4.3928 6.1408 24 6 7.1685 -4.3553 5.7939 25 6 4.9797 -5.6283 5.9591 26 7 3.1529 -2.3817 4.9282 27 6 2.6356 -1.7364 3.9034 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.7086 1.1613 -3.4844 32 1 0.7862 -2.1448 2.0716 33 1 1.4452 -2.5749 0.4750 34 1 2.4984 -2.6036 1.9097 35 1 5.2744 0.2712 3.1745 36 1 6.1668 -0.9877 5.1200 37 1 7.7621 -4.6359 6.6640 38 1 7.3627 -5.0547 4.9807 39 1 7.4392 -3.3476 5.4788 40 1 4.5489 -5.6449 4.9581 41 1 5.6395 -6.4868 6.0851 42 1 4.1807 -5.6726 6.6993 43 1 1.6313 -1.9649 3.5784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184406793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:49 Heat of formation + Delta-G solvation = -48.160214 kcal Electronic energy + Delta-G solvation = -27871.825705 eV Core-core repulsion = 23852.435834 eV Total energy + Delta-G solvation = -4019.389871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -40.76095 -38.79368 -37.57890 -36.53504 -36.11849 -35.66037 -33.32019 -32.78661 -31.81576 -29.35830 -28.48234 -26.66007 -25.40625 -25.19525 -24.85853 -23.89061 -21.52323 -19.61794 -19.16845 -18.42794 -17.68462 -17.46305 -16.88022 -16.38314 -16.21727 -15.64065 -15.32345 -14.93730 -14.74339 -14.69378 -14.34999 -14.06072 -13.85327 -13.44822 -13.38758 -12.98034 -12.95041 -12.70187 -12.66761 -12.58306 -12.34750 -12.00179 -11.91060 -11.81833 -11.76123 -11.37155 -11.17051 -10.97259 -10.87310 -10.41538 -10.30384 -10.19325 -10.12995 -9.65846 -9.55238 -9.35441 -9.21490 -8.55343 -7.86304 -6.19559 -4.29007 -0.10737 0.20700 0.91855 2.46710 2.90165 3.19631 3.24530 3.25793 3.31440 3.47134 3.63969 3.76849 4.27880 4.37210 4.37383 4.58348 4.62351 4.72549 4.83786 4.96239 5.01882 5.11952 5.19673 5.24354 5.35601 5.45908 5.48360 5.53745 5.56263 5.73535 5.80463 6.07531 6.14248 6.19243 6.62156 6.68936 6.90420 7.18050 7.28848 7.34010 7.56820 7.85368 8.02061 8.25535 8.57151 8.77600 9.37831 10.85750 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019475 B = 0.002733 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.364812 B =10242.119011 C =10648.120894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.066 0.934 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.277 1.277 12 N -0.578 5.578 13 C 0.071 3.929 14 C 0.542 3.458 15 O -0.535 6.535 16 C -0.108 4.108 17 C -0.044 4.044 18 C -0.090 4.090 19 C -0.446 4.446 20 S 2.705 3.295 21 O -0.947 6.947 22 O -0.932 6.932 23 N -1.002 6.002 24 C 0.090 3.910 25 C 0.084 3.916 26 N -0.393 5.393 27 C 0.102 3.898 28 H 0.032 0.968 29 H 0.013 0.987 30 H 0.096 0.904 31 H 0.266 0.734 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.213 -12.494 15.028 21.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.083 0.917 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.307 5.307 13 C -0.072 4.072 14 C 0.327 3.673 15 O -0.413 6.413 16 C -0.114 4.114 17 C -0.071 4.071 18 C -0.112 4.112 19 C -0.664 4.664 20 S 2.790 3.210 21 O -0.936 6.936 22 O -0.922 6.922 23 N -0.842 5.842 24 C -0.055 4.055 25 C -0.061 4.061 26 N -0.103 5.103 27 C -0.060 4.060 28 H 0.051 0.949 29 H 0.032 0.968 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.173 0.827 36 H 0.174 0.826 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 8.660 -12.165 16.037 21.912 hybrid contribution 0.637 0.330 -2.257 2.368 sum 9.298 -11.834 13.780 20.405 Atomic orbital electron populations 1.22099 0.97703 0.99663 1.01121 1.19068 0.91248 0.94510 0.79299 0.91660 1.21237 1.32428 1.13298 0.90161 0.92196 1.24886 0.94781 0.94930 0.99009 1.69861 1.35875 1.22403 1.24126 0.86518 0.79220 0.79589 0.81849 1.20140 1.21057 1.20222 1.48268 1.47556 1.11724 1.23200 1.22011 0.98754 0.83188 1.03263 1.18004 0.80244 0.86933 0.82157 1.90784 1.61044 1.14589 1.74924 1.21699 0.95900 0.96275 0.97493 1.21828 0.94178 0.96927 0.94135 1.21918 1.00846 0.94040 0.94394 1.33748 0.99676 1.11840 1.21180 1.02112 0.73213 0.72486 0.73207 1.93618 1.57434 1.68868 1.73707 1.93583 1.51228 1.80025 1.67386 1.57298 1.18428 1.25495 1.82969 1.21573 0.79151 1.03319 1.01504 1.21662 0.96482 0.85348 1.02653 1.67806 1.09054 1.23512 1.09913 1.23802 1.00970 0.90801 0.90410 0.94932 0.96771 0.88584 0.92426 0.92967 0.89126 0.92537 0.82696 0.82560 0.91793 0.90558 0.90887 0.92305 0.90348 0.89446 0.80167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.97 37.16 0.33 -3.03 16 2 C 0.26 6.27 2.63 -69.09 -0.18 6.09 16 3 H 0.07 1.85 6.91 -51.93 -0.36 1.49 16 4 C -0.53 -13.68 7.96 -34.44 -0.27 -13.95 16 5 H 0.06 1.50 7.42 -52.49 -0.39 1.11 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.13 11.32 55.43 0.63 -23.50 16 8 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 9 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.58 -11.63 2.75 -176.38 -0.49 -12.11 16 13 C 0.07 1.11 7.82 59.85 0.47 1.58 16 14 C 0.54 10.81 7.38 -12.33 -0.09 10.72 16 15 O -0.53 -12.66 16.27 5.32 0.09 -12.57 16 16 C -0.11 -1.71 5.26 -104.82 -0.55 -2.26 16 17 C -0.04 -0.60 9.79 -38.87 -0.38 -0.98 16 18 C -0.09 -1.06 9.54 -39.50 -0.38 -1.44 16 19 C -0.45 -5.66 6.86 -17.47 -0.12 -5.78 16 20 S 2.70 30.78 5.71 -107.50 -0.61 30.17 16 21 O -0.95 -11.87 16.31 -57.17 -0.93 -12.81 16 22 O -0.93 -13.11 16.45 -57.17 -0.94 -14.06 16 23 N -1.00 -8.25 3.58 -129.21 -0.46 -8.71 16 24 C 0.09 0.53 10.29 59.85 0.62 1.14 16 25 C 0.08 0.56 10.66 59.85 0.64 1.20 16 26 N -0.39 -5.52 10.09 -12.11 -0.12 -5.64 16 27 C 0.10 1.44 8.76 -17.13 -0.15 1.29 16 28 H 0.03 0.67 7.67 -51.93 -0.40 0.28 16 29 H 0.01 0.29 8.14 -51.92 -0.42 -0.14 16 30 H 0.10 2.42 6.07 -51.93 -0.32 2.10 16 31 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 32 H 0.05 0.68 6.88 -51.93 -0.36 0.32 16 33 H 0.09 1.49 7.10 -51.93 -0.37 1.12 16 34 H 0.06 0.76 5.83 -51.93 -0.30 0.46 16 35 H 0.16 1.96 8.06 -52.48 -0.42 1.53 16 36 H 0.16 1.36 7.59 -52.49 -0.40 0.96 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 39 H 0.07 0.39 7.79 -51.93 -0.40 -0.01 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 42 H 0.09 0.65 7.02 -51.93 -0.36 0.28 16 43 H 0.18 2.24 5.25 -52.49 -0.28 1.97 16 LS Contribution 367.02 15.07 5.53 5.53 Total: -1.00 -33.91 367.02 -8.10 -42.00 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.60 Total: 0.29 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.16 Total: -3.76 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.44 Total: -49.97 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -1.79 Total: -39.43 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 30.78 SS G_CDS: -0.61 Total: 30.17 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.91 -8.10 -42.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184406793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.158 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds