Wall clock time and date at job start Tue Mar 31 2020 23:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.46907 * 2 1 4 4 C 1.36021 * 116.99663 * 180.02562 * 3 2 1 5 5 C 1.38670 * 120.07601 * 270.27294 * 4 3 2 6 6 Cl 1.73598 * 120.01006 * 0.02562 * 5 4 3 7 7 C 1.38329 * 119.97980 * 180.25996 * 5 4 3 8 8 C 1.38254 * 120.13275 * 359.48536 * 7 5 4 9 9 C 1.50698 * 119.92529 * 180.25804 * 8 7 5 10 10 N 1.46899 * 109.47144 * 90.00300 * 9 8 7 11 11 C 1.47478 * 111.00231 * 74.02880 * 10 9 8 12 12 C 1.53516 * 87.93322 * 138.70366 * 11 10 9 13 13 O 1.42900 * 114.16937 * 87.62534 * 12 11 10 14 14 C 1.50693 * 114.17217 * 220.32899 * 12 11 10 15 15 H 1.08001 * 119.99901 * 93.84214 * 14 12 11 16 16 C 1.37876 * 120.00409 * 273.84425 * 14 12 11 17 17 N 1.31513 * 119.99625 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00232 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47440 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47364 * 119.99724 * 18 16 14 21 21 H 1.48500 * 109.46922 * 239.99469 * 18 16 14 22 22 C 1.47482 * 111.00033 * 170.00448 * 10 9 8 23 23 C 1.38238 * 120.15483 * 0.23678 * 8 7 5 24 24 C 1.38597 * 120.01629 * 0.02562 * 23 8 7 25 25 O 1.35999 * 120.06315 * 180.02562 * 24 23 8 26 26 C 1.42898 * 116.99810 * 359.97438 * 25 24 23 27 27 H 1.08994 * 109.47265 * 59.99748 * 1 2 3 28 28 H 1.09000 * 109.46899 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46995 * 299.99537 * 1 2 3 30 30 H 1.09001 * 109.46978 * 239.99985 * 2 1 3 31 31 H 1.08994 * 109.47265 * 120.00252 * 2 1 3 32 32 H 1.08002 * 119.93668 * 179.77144 * 7 5 4 33 33 H 1.09005 * 109.47342 * 210.00286 * 9 8 7 34 34 H 1.09001 * 109.46939 * 330.00402 * 9 8 7 35 35 H 1.08990 * 113.47705 * 253.47112 * 11 10 9 36 36 H 1.09002 * 113.47260 * 23.93873 * 11 10 9 37 37 H 0.96696 * 113.99988 * 86.15960 * 13 12 11 38 38 H 0.97001 * 119.99940 * 179.97438 * 17 16 14 39 39 H 1.09004 * 113.47540 * 336.05798 * 22 10 9 40 40 H 1.08997 * 113.47878 * 106.47208 * 22 10 9 41 41 H 1.08001 * 119.98872 * 180.02562 * 23 8 7 42 42 H 1.08997 * 109.47608 * 300.00227 * 26 25 24 43 43 H 1.08996 * 109.47562 * 60.00740 * 26 25 24 44 44 H 1.09008 * 109.46798 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3548 1.5255 -0.0005 5 6 4.0450 1.6107 1.1992 6 17 3.1884 1.4893 2.7042 7 6 5.4157 1.7973 1.1963 8 6 6.1012 1.8885 -0.0008 9 6 7.5952 2.0860 0.0016 10 7 8.2621 0.7771 0.0015 11 6 8.1665 0.1352 -1.3228 12 6 9.6271 -0.3060 -1.1527 13 8 9.7861 -1.5543 -0.4755 14 6 10.4548 -0.1965 -2.4071 15 1 11.0378 0.6933 -2.5934 16 6 10.4679 -1.2322 -3.3171 17 7 9.7583 -2.3160 -3.0900 18 14 11.4946 -1.0967 -4.8718 19 1 12.1951 0.2125 -4.8899 20 1 12.4946 -2.1941 -4.9019 21 1 10.6098 -1.2007 -6.0599 22 6 9.7106 0.9220 -0.2352 23 6 5.4195 1.7986 -1.2000 24 6 4.0455 1.6171 -1.2045 25 8 3.3739 1.5279 -2.3838 26 6 4.1480 1.6304 -3.5805 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.9520 1.8672 2.1311 33 1 7.8894 2.6437 -0.8876 34 1 7.8867 2.6423 0.8924 35 1 7.4624 -0.6962 -1.3524 36 1 8.0189 0.8428 -2.1386 37 1 9.7330 -2.3260 -1.0556 38 1 9.7672 -3.0445 -3.7304 39 1 9.9750 1.8396 -0.7609 40 1 10.3149 0.7583 0.6570 41 1 5.9578 1.8698 -2.1336 42 1 4.6546 2.5952 -3.6042 43 1 4.8883 0.8307 -3.6040 44 1 3.4915 1.5437 -4.4464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191919697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:19 Heat of formation + Delta-G solvation = -65.768899 kcal Electronic energy + Delta-G solvation = -28019.427584 eV Core-core repulsion = 23964.937685 eV Total energy + Delta-G solvation = -4054.489899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.65970 -39.29842 -38.29905 -37.31418 -36.35881 -34.38026 -32.23847 -32.06844 -30.65505 -30.12435 -28.21034 -27.15050 -25.62399 -24.95921 -23.34077 -22.60671 -22.41682 -21.04617 -18.73251 -18.34028 -17.43963 -17.15744 -16.98218 -15.97529 -15.29401 -15.18221 -15.09566 -15.04125 -14.96114 -14.46712 -14.31588 -14.09463 -13.78582 -13.23687 -12.95565 -12.68349 -12.54816 -12.23908 -12.09149 -11.97994 -11.87405 -11.64663 -11.59960 -11.50185 -11.32634 -11.20437 -11.04578 -10.82363 -10.71619 -10.58404 -10.35275 -10.07016 -9.89683 -9.38446 -8.76305 -8.59878 -8.32181 -8.11261 -7.97838 -6.34296 -4.44443 0.95860 1.24680 1.99267 3.12201 3.21850 3.22702 3.24675 3.25751 3.77845 4.18307 4.63638 4.84088 4.88473 4.95806 4.98488 5.04182 5.08258 5.12961 5.14200 5.19795 5.28388 5.31979 5.46894 5.59099 5.64673 5.76143 5.78366 5.86431 5.95033 5.96656 6.00593 6.08192 6.21590 6.27842 6.44336 6.52238 6.62109 6.95593 7.03084 7.05140 7.26879 7.53606 7.69172 7.84131 7.93675 8.58359 9.26202 9.62426 10.71589 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014152 B = 0.003176 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.024429 B = 8814.441897 C = 9742.297709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 O -0.316 6.316 4 C 0.063 3.937 5 C -0.017 4.017 6 Cl -0.056 7.056 7 C -0.118 4.118 8 C -0.015 4.015 9 C 0.052 3.948 10 N -0.463 5.463 11 C -0.019 4.019 12 C 0.248 3.752 13 O -0.569 6.569 14 C -0.535 4.535 15 H 0.067 0.933 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.903 3.097 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.282 1.282 22 C 0.003 3.997 23 C -0.182 4.182 24 C 0.124 3.876 25 O -0.305 6.305 26 C 0.023 3.977 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.140 0.860 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.390 0.610 38 H 0.271 0.729 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.138 0.862 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.812 7.299 3.167 15.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 O -0.233 6.233 4 C 0.017 3.983 5 C -0.045 4.045 6 Cl -0.027 7.027 7 C -0.138 4.138 8 C -0.016 4.016 9 C -0.076 4.076 10 N -0.186 5.186 11 C -0.148 4.148 12 C 0.206 3.794 13 O -0.382 6.382 14 C -0.573 4.573 15 H 0.085 0.915 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.208 1.208 22 C -0.126 4.126 23 C -0.202 4.202 24 C 0.078 3.922 25 O -0.218 6.218 26 C -0.072 4.072 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.158 0.842 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.246 0.754 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.156 0.844 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.493 7.282 4.310 16.782 hybrid contribution 0.904 0.014 -2.109 2.294 sum -13.589 7.296 2.201 15.580 Atomic orbital electron populations 1.21716 0.93223 1.02315 1.03140 1.22730 0.95444 0.82527 1.00797 1.86109 1.16170 1.26968 1.94029 1.17413 0.84075 1.08290 0.88488 1.20930 0.92452 1.04840 0.86239 1.98354 1.77467 1.96395 1.30476 1.20757 0.90894 1.02916 0.99197 1.19556 0.95723 0.94892 0.91434 1.21690 0.89452 0.94661 1.01795 1.69101 1.05594 1.13478 1.30379 1.24682 1.03502 0.98314 0.88294 1.19349 0.89397 0.82190 0.88444 1.86036 1.95009 1.16913 1.40210 1.21613 1.28746 1.03220 1.03724 0.91482 1.25066 0.94635 0.94869 0.98538 1.69305 1.40516 1.06678 1.37251 0.86358 0.80032 0.78442 0.82132 1.19558 1.20589 1.20770 1.24113 0.89267 0.99281 0.99920 1.21238 0.92253 1.06879 0.99796 1.19086 0.90314 0.97268 0.85558 1.86124 1.36049 1.87518 1.12099 1.23162 0.97355 1.01861 0.84864 0.91713 0.90851 0.91801 0.92807 0.92932 0.84243 0.93175 0.90006 0.91442 0.92539 0.75396 0.91834 0.91653 0.90815 0.84385 0.92458 0.91938 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 37.16 0.38 -0.99 16 2 C 0.06 0.73 6.78 37.16 0.25 0.98 16 3 O -0.32 -4.64 9.30 -34.33 -0.32 -4.96 16 4 C 0.06 0.96 5.73 -39.10 -0.22 0.74 16 5 C -0.02 -0.25 6.33 -39.39 -0.25 -0.50 16 6 Cl -0.06 -0.73 28.50 -51.86 -1.48 -2.21 16 7 C -0.12 -1.73 9.47 -39.54 -0.37 -2.11 16 8 C -0.02 -0.23 5.18 -104.62 -0.54 -0.77 16 9 C 0.05 0.83 4.97 -4.98 -0.02 0.80 16 10 N -0.46 -9.17 6.40 -246.05 -1.58 -10.75 16 11 C -0.02 -0.41 6.24 -7.54 -0.05 -0.45 16 12 C 0.25 6.05 1.57 -91.24 -0.14 5.91 16 13 O -0.57 -15.15 13.54 -35.23 -0.48 -15.62 16 14 C -0.53 -13.68 8.68 -34.44 -0.30 -13.98 16 15 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 16 C 0.07 1.80 5.40 -17.82 -0.10 1.71 16 17 N -0.90 -23.32 11.02 55.43 0.61 -22.71 16 18 Si 0.90 19.64 29.54 -169.99 -5.02 14.61 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 C 0.00 0.06 7.12 -7.53 -0.05 0.00 16 23 C -0.18 -2.73 8.10 -39.45 -0.32 -3.05 16 24 C 0.12 1.88 6.70 -39.13 -0.26 1.62 16 25 O -0.30 -4.33 10.28 -34.26 -0.35 -4.68 16 26 C 0.02 0.24 9.81 101.05 0.99 1.24 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.05 0.76 7.50 -51.93 -0.39 0.37 16 34 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 35 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.06 1.18 7.29 -51.93 -0.38 0.81 16 37 H 0.39 10.58 6.33 45.56 0.29 10.86 16 38 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 39 H 0.07 1.25 7.72 -51.93 -0.40 0.85 16 40 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.14 1.95 5.93 -52.49 -0.31 1.64 16 42 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 43 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 44 H 0.10 0.85 8.14 -51.92 -0.42 0.42 16 LS Contribution 379.78 15.07 5.72 5.72 Total: -1.00 -28.23 379.78 -9.66 -37.88 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -5.76 Total: 11.59 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.01 Total: -8.88 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: -0.96 Total: -33.46 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -1.15 Total: -25.26 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.48 Total: -2.21 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.23 -9.66 -37.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191919697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.886 kcal (2) G-P(sol) polarization free energy of solvation -28.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds