Wall clock time and date at job start Wed Apr 1 2020 00:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36245 * 120.43670 * 2 1 4 4 C 1.35097 * 120.86728 * 179.97438 * 3 2 1 5 5 N 1.33173 * 121.72051 * 359.68522 * 4 3 2 6 6 C 1.31580 * 120.75357 * 0.60516 * 5 4 3 7 7 N 1.39101 * 120.45104 * 179.70176 * 6 5 4 8 8 C 1.34783 * 119.99526 * 359.72617 * 7 6 5 9 9 O 1.21732 * 120.00163 * 359.97438 * 8 7 6 10 10 C 1.46188 * 119.99401 * 179.97438 * 8 7 6 11 11 C 1.35068 * 119.99766 * 186.78415 * 10 8 7 12 12 C 1.46950 * 119.99967 * 11.38942 * 11 10 8 13 13 C 1.40031 * 120.10300 * 43.45300 * 12 11 10 14 14 C 1.37594 * 119.89930 * 179.97438 * 13 12 11 15 15 C 1.39180 * 120.10149 * 0.26308 * 14 13 12 16 16 O 1.35564 * 119.89901 * 179.73695 * 15 14 13 17 17 C 1.34782 * 116.99911 * 5.79822 * 16 15 14 18 18 H 1.07999 * 119.99835 * 5.28012 * 17 16 15 19 19 C 1.38722 * 119.99856 * 185.29598 * 17 16 15 20 20 N 1.31505 * 119.99972 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99742 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47211 * 89.99566 * 21 19 17 23 23 H 1.48501 * 109.46785 * 209.99338 * 21 19 17 24 24 H 1.48493 * 109.47498 * 329.99223 * 21 19 17 25 25 C 1.39189 * 120.20038 * 359.48740 * 15 14 13 26 26 C 1.37590 * 120.10326 * 0.51119 * 25 15 14 27 27 C 1.35176 * 120.43414 * 179.97438 * 2 1 3 28 28 O 1.21933 * 120.78697 * 0.04659 * 27 2 1 29 29 H 1.08994 * 109.47080 * 270.02068 * 1 2 3 30 30 H 1.09001 * 109.46794 * 30.02146 * 1 2 3 31 31 H 1.09004 * 109.46748 * 150.01610 * 1 2 3 32 32 H 1.08004 * 119.56708 * 359.97438 * 3 2 1 33 33 H 1.07992 * 119.13918 * 179.97438 * 4 3 2 34 34 H 0.96993 * 120.00350 * 179.72137 * 7 6 5 35 35 H 1.07996 * 120.00717 * 6.78859 * 10 8 7 36 36 H 1.08000 * 120.00115 * 191.38744 * 11 10 8 37 37 H 1.08005 * 120.04982 * 359.96718 * 13 12 11 38 38 H 1.08001 * 119.94878 * 179.97438 * 14 13 12 39 39 H 0.97002 * 119.99772 * 180.02562 * 20 19 17 40 40 H 1.07997 * 119.94441 * 180.25789 * 25 15 14 41 41 H 1.07999 * 120.05166 * 179.77259 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1552 1.1747 0.0000 4 6 3.5061 1.1848 0.0005 5 7 4.2148 0.0574 0.0073 6 6 3.6155 -1.1141 0.0018 7 7 4.3620 -2.2878 0.0026 8 6 5.7086 -2.2299 0.0036 9 8 6.2715 -1.1506 0.0032 10 6 6.4931 -3.4635 0.0050 11 6 7.8355 -3.4099 0.1442 12 6 8.4833 -2.1523 0.5421 13 6 7.9330 -1.3724 1.5666 14 6 8.5434 -0.1959 1.9362 15 6 9.7029 0.2221 1.2898 16 8 10.2978 1.3846 1.6536 17 6 9.7867 2.0247 2.7239 18 1 8.9967 1.5667 3.3005 19 6 10.2751 3.2720 3.0846 20 7 11.2372 3.8295 2.3825 21 14 9.5662 4.1595 4.5675 22 1 10.3325 3.7832 5.7826 23 1 9.6600 5.6266 4.3578 24 1 8.1426 3.7743 4.7411 25 6 10.2563 -0.5525 0.2743 26 6 9.6530 -1.7304 -0.1019 27 6 2.1497 -1.1655 0.0005 28 8 1.5627 -2.2342 0.0001 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5136 32 1 1.6152 2.1101 -0.0004 33 1 4.0249 2.1320 0.0001 34 1 3.9135 -3.1478 0.0026 35 1 5.9994 -4.4177 -0.1051 36 1 8.4328 -4.2912 -0.0370 37 1 7.0308 -1.6937 2.0659 38 1 8.1194 0.4065 2.7260 39 1 11.5790 4.7015 2.6350 40 1 11.1585 -0.2263 -0.2217 41 1 10.0811 -2.3289 -0.8924 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255033119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:54 Heat of formation + Delta-G solvation = 27.769355 kcal Electronic energy + Delta-G solvation = -28522.372507 eV Core-core repulsion = 24370.831237 eV Total energy + Delta-G solvation = -4151.541269 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73303 -39.82654 -38.72746 -37.70429 -36.78714 -35.85918 -33.94669 -33.03740 -32.10288 -30.05275 -29.89484 -28.55540 -28.03547 -25.49711 -24.87714 -23.59057 -22.82213 -21.72068 -21.00280 -19.78567 -18.34190 -18.01649 -17.88174 -17.20055 -17.10154 -16.60392 -16.32971 -15.66095 -14.97327 -14.63225 -14.52096 -14.43512 -14.35024 -13.71937 -13.67916 -13.58864 -13.47568 -13.36611 -12.93486 -12.81407 -12.76137 -12.59054 -12.23496 -11.66494 -11.49346 -11.38391 -11.28904 -10.96350 -10.72642 -10.58809 -10.40457 -9.98998 -9.84865 -9.37177 -9.21067 -8.95481 -8.66066 -7.92978 -7.69085 -6.85057 -6.44012 -3.98735 0.50319 1.27854 1.55150 1.94904 2.45124 2.72325 2.95323 3.15068 3.15633 3.20396 3.35664 3.79116 3.87590 3.99014 4.34563 4.51931 4.60989 4.72669 4.78897 5.11178 5.11681 5.15001 5.16542 5.23781 5.34050 5.51167 5.60434 5.78619 5.88202 6.01227 6.24049 6.27631 6.33547 6.44195 6.52268 6.63182 6.80748 7.06700 7.14140 7.24248 7.35707 7.39457 7.51465 7.54464 7.94268 7.95884 8.03169 8.46417 9.02003 9.73879 10.73941 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010106 B = 0.003376 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.894256 B = 8292.730558 C =10562.784583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.484 5.484 3 C 0.024 3.976 4 C 0.009 3.991 5 N -0.409 5.409 6 C 0.303 3.697 7 N -0.637 5.637 8 C 0.526 3.474 9 O -0.439 6.439 10 C -0.268 4.268 11 C 0.036 3.964 12 C -0.197 4.197 13 C 0.015 3.985 14 C -0.238 4.238 15 C 0.173 3.827 16 O -0.172 6.172 17 C -0.387 4.387 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.860 5.860 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.210 4.210 26 C -0.042 4.042 27 C 0.485 3.515 28 O -0.537 6.537 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.167 0.833 33 H 0.175 0.825 34 H 0.420 0.580 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.270 0.730 40 H 0.115 0.885 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.462 -9.414 -4.655 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.200 5.200 3 C -0.102 4.102 4 C -0.131 4.131 5 N -0.132 5.132 6 C 0.041 3.959 7 N -0.287 5.287 8 C 0.315 3.685 9 O -0.306 6.306 10 C -0.289 4.289 11 C 0.017 3.983 12 C -0.197 4.197 13 C -0.003 4.003 14 C -0.257 4.257 15 C 0.118 3.882 16 O -0.074 6.074 17 C -0.463 4.463 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.229 4.229 26 C -0.061 4.061 27 C 0.276 3.724 28 O -0.414 6.414 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.184 0.816 33 H 0.192 0.808 34 H 0.257 0.743 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.114 0.886 38 H 0.141 0.859 39 H 0.080 0.920 40 H 0.133 0.867 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.228 -8.723 -4.729 20.754 hybrid contribution -1.790 0.142 0.697 1.926 sum -20.018 -8.581 -4.032 22.150 Atomic orbital electron populations 1.22178 0.76266 1.05088 1.04050 1.45206 1.09116 1.06104 1.59578 1.22704 0.94518 0.89862 1.03152 1.21913 0.89058 0.97357 1.04789 1.68036 1.38163 0.96212 1.10833 1.21181 0.86253 0.88272 1.00230 1.43454 1.07039 1.06399 1.71767 1.18772 0.80351 0.91293 0.78038 1.91110 1.68075 1.29648 1.41798 1.22456 0.95001 0.96102 1.15357 1.22362 0.93274 0.96456 0.86249 1.18306 0.99557 0.98059 1.03825 1.20553 0.94201 0.92244 0.93319 1.20938 0.99107 0.99440 1.06215 1.19553 0.90278 0.86684 0.91714 1.83914 1.50838 1.28810 1.43848 1.21385 1.20887 1.00958 1.03077 0.88958 1.25307 0.96320 0.95718 0.99183 1.70022 1.24712 1.16451 1.38269 0.85715 0.79286 0.78554 0.79926 1.19858 1.20231 1.19147 1.19992 1.03466 0.97071 1.02404 1.20618 0.93222 0.95122 0.97103 1.19044 0.88380 0.84027 0.80945 1.90926 1.70709 1.27526 1.52283 0.90387 0.89244 0.88843 0.81573 0.80757 0.74304 0.85679 0.85677 0.88572 0.85862 0.91984 0.86656 0.87134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.37 10.46 59.85 0.63 1.00 16 2 N -0.48 -4.65 3.02 -124.87 -0.38 -5.03 16 3 C 0.02 0.20 10.32 -16.71 -0.17 0.03 16 4 C 0.01 0.11 11.03 -18.09 -0.20 -0.09 16 5 N -0.41 -6.60 8.02 -10.99 -0.09 -6.69 16 6 C 0.30 4.43 7.68 -152.55 -1.17 3.26 16 7 N -0.64 -8.68 5.39 -10.95 -0.06 -8.74 16 8 C 0.53 8.31 6.73 -13.07 -0.09 8.22 16 9 O -0.44 -8.82 10.47 5.16 0.05 -8.77 16 10 C -0.27 -3.43 9.90 -37.52 -0.37 -3.80 16 11 C 0.04 0.50 9.80 -37.18 -0.36 0.13 16 12 C -0.20 -3.62 4.54 -105.02 -0.48 -4.09 16 13 C 0.02 0.32 6.60 -39.14 -0.26 0.06 16 14 C -0.24 -5.61 9.11 -39.47 -0.36 -5.97 16 15 C 0.17 4.39 6.66 -38.88 -0.26 4.14 16 16 O -0.17 -5.05 9.74 0.76 0.01 -5.04 16 17 C -0.39 -11.08 9.44 30.91 0.29 -10.78 16 18 H 0.09 2.48 5.27 -52.49 -0.28 2.20 16 19 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 20 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 21 Si 0.94 20.79 29.55 -169.99 -5.02 15.77 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 C -0.21 -4.68 9.97 -39.46 -0.39 -5.07 16 26 C -0.04 -0.80 9.78 -39.14 -0.38 -1.18 16 27 C 0.48 6.25 7.65 -12.68 -0.10 6.15 16 28 O -0.54 -7.63 16.33 4.98 0.08 -7.55 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.24 8.05 -51.93 -0.42 -0.17 16 31 H 0.09 0.60 7.49 -51.93 -0.39 0.21 16 32 H 0.17 0.70 8.06 -52.48 -0.42 0.27 16 33 H 0.18 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.42 4.51 8.27 -40.82 -0.34 4.17 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.10 1.86 7.01 -52.48 -0.37 1.49 16 38 H 0.12 2.96 5.69 -52.49 -0.30 2.66 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 41 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -37.42 359.25 -7.19 -44.60 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -4.18 Total: 7.74 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -3.77 Total: -7.00 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.23 Total: -45.17 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: 0.14 Total: -21.36 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.42 -7.19 -44.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255033119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.373 kcal (2) G-P(sol) polarization free energy of solvation -37.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds