Wall clock time and date at job start Tue Mar 31 2020 23:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47195 * 2 1 4 4 C 1.46897 * 111.00415 * 297.51302 * 3 2 1 5 5 C 1.50706 * 109.46643 * 292.34483 * 4 3 2 6 6 H 1.07998 * 120.00297 * 354.95904 * 5 4 3 7 7 C 1.37878 * 119.99908 * 174.95649 * 5 4 3 8 8 N 1.31517 * 120.00181 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00074 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47186 * 89.99883 * 9 7 5 11 11 H 1.48496 * 109.47188 * 210.00039 * 9 7 5 12 12 H 1.48507 * 109.47132 * 329.99813 * 9 7 5 13 13 C 1.46908 * 110.99867 * 61.46118 * 3 2 1 14 14 C 1.50700 * 109.46788 * 66.04702 * 13 3 2 15 15 O 1.21286 * 120.00439 * 359.97438 * 14 13 3 16 16 N 1.34771 * 119.99943 * 179.97438 * 14 13 3 17 17 C 1.39006 * 120.00162 * 179.97438 * 16 14 13 18 18 N 1.29630 * 124.94265 * 180.02562 * 17 16 14 19 19 C 1.31990 * 116.91183 * 180.02562 * 18 17 16 20 20 C 1.50698 * 122.71202 * 179.97438 * 19 18 17 21 21 C 1.50699 * 109.47477 * 304.97564 * 20 19 18 22 22 O 1.20829 * 119.99379 * 359.97438 * 21 20 19 23 23 O 1.34229 * 120.00446 * 180.02562 * 21 20 19 24 24 C 1.45199 * 116.99993 * 179.97438 * 23 21 20 25 25 C 1.33439 * 114.57121 * 359.97438 * 19 18 17 26 26 S 1.70962 * 124.94402 * 0.02616 * 17 16 14 27 27 H 1.08999 * 109.47316 * 59.08352 * 1 2 3 28 28 H 1.09003 * 109.47506 * 179.08750 * 1 2 3 29 29 H 1.09005 * 109.47678 * 299.08354 * 1 2 3 30 30 H 1.09000 * 109.46778 * 240.00104 * 2 1 3 31 31 H 1.09001 * 109.46790 * 119.99947 * 2 1 3 32 32 H 1.09004 * 109.46927 * 52.33695 * 4 3 2 33 33 H 1.08993 * 109.47892 * 172.34828 * 4 3 2 34 34 H 0.96995 * 120.00372 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47141 * 306.04958 * 13 3 2 36 36 H 1.08996 * 109.46757 * 186.04322 * 13 3 2 37 37 H 0.97004 * 120.00221 * 359.97438 * 16 14 13 38 38 H 1.09005 * 109.47576 * 64.97280 * 20 19 18 39 39 H 1.08996 * 109.47220 * 184.97225 * 20 19 18 40 40 H 1.08997 * 109.46855 * 179.97438 * 24 23 21 41 41 H 1.09000 * 109.47369 * 300.00174 * 24 23 21 42 42 H 1.09004 * 109.46967 * 60.00250 * 24 23 21 43 43 H 1.08001 * 125.96830 * 180.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5979 2.0925 -1.2163 5 6 2.3002 1.5002 -2.4109 6 1 3.0506 0.7361 -2.2722 7 6 1.9846 1.9339 -3.6811 8 7 1.0703 2.8641 -3.8502 9 14 2.8545 1.1993 -5.1620 10 1 2.0962 0.0177 -5.6457 11 1 2.9329 2.2138 -6.2435 12 1 4.2260 0.7825 -4.7739 13 6 1.5774 2.0997 1.2049 14 6 2.2290 1.4890 2.4187 15 8 2.9868 0.5504 2.2927 16 7 1.9697 1.9857 3.6444 17 6 2.5703 1.4221 4.7642 18 7 2.3895 1.8218 5.9840 19 6 3.0417 1.1706 6.9289 20 6 2.9282 1.5251 8.3892 21 6 3.2673 2.9810 8.5805 22 8 3.5704 3.6607 7.6287 23 8 3.2335 3.5223 9.8084 24 6 3.5723 4.9299 9.9178 25 6 3.8096 0.1730 6.4865 26 16 3.6549 0.1009 4.7330 27 1 -0.3634 0.5280 -0.8816 28 1 -0.3634 -1.0275 -0.0164 29 1 -0.3635 0.4995 0.8981 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5199 1.9900 -1.3409 33 1 1.8550 3.1482 -1.1302 34 1 0.8480 3.1689 -4.7437 35 1 0.4940 2.0220 1.2963 36 1 1.8614 3.1493 1.1294 37 1 1.3639 2.7366 3.7453 38 1 1.9091 1.3417 8.7296 39 1 3.6200 0.9120 8.9667 40 1 3.5054 5.2397 10.9607 41 1 4.5882 5.0883 9.5557 42 1 2.8772 5.5185 9.3190 43 1 4.4192 -0.4769 7.0967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267098775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:59 Heat of formation + Delta-G solvation = -52.494875 kcal Electronic energy + Delta-G solvation = -26707.853349 eV Core-core repulsion = 22688.275512 eV Total energy + Delta-G solvation = -4019.577836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.90230 -40.39351 -39.40762 -36.94201 -36.60801 -34.99357 -32.63649 -32.09397 -29.96899 -29.08770 -28.27999 -27.39185 -25.70078 -24.09239 -23.16978 -21.82802 -21.47790 -20.19844 -19.14740 -18.27057 -17.86705 -17.05817 -16.87304 -16.77203 -16.26493 -16.16163 -16.01125 -15.03508 -14.75960 -14.51702 -14.40919 -14.01967 -13.94668 -13.77487 -13.43802 -13.20579 -12.91315 -12.59903 -12.39580 -12.33774 -11.88015 -11.69064 -11.54998 -11.23108 -11.06680 -11.05748 -10.92735 -10.76243 -10.65556 -10.61832 -10.11864 -10.02812 -9.74910 -9.56908 -9.23543 -9.19173 -8.46770 -8.32256 -7.31536 -6.06127 -4.06706 0.69726 1.13744 1.79574 2.01747 2.15297 2.51602 2.58656 3.01838 3.31295 3.37740 3.43055 4.09013 4.40744 4.62327 4.69655 4.80326 4.80844 4.87883 4.88117 4.98890 5.13901 5.22087 5.29895 5.40547 5.50709 5.57102 5.68269 5.79635 5.97764 6.06314 6.10150 6.16349 6.39853 6.61799 6.85395 6.91950 7.18803 7.33128 7.54434 7.71727 7.75330 7.87742 8.01846 8.09883 8.45501 9.01457 9.57547 11.04548 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023195 B = 0.002108 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.866480 B =13277.660598 C =13749.040654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.053 3.947 3 N -0.517 5.517 4 C 0.189 3.811 5 C -0.504 4.504 6 H 0.065 0.935 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.040 3.960 14 C 0.514 3.486 15 O -0.480 6.480 16 N -0.630 5.630 17 C 0.255 3.745 18 N -0.502 5.502 19 C 0.094 3.906 20 C -0.032 4.032 21 C 0.460 3.540 22 O -0.483 6.483 23 O -0.365 6.365 24 C 0.037 3.963 25 C -0.320 4.320 26 S 0.256 5.744 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.007 0.993 33 H 0.027 0.973 34 H 0.261 0.739 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.423 0.577 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.212 -2.144 27.327 27.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.075 4.075 3 N -0.241 5.241 4 C 0.065 3.935 5 C -0.542 4.542 6 H 0.083 0.917 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.092 4.092 14 C 0.301 3.699 15 O -0.351 6.351 16 N -0.281 5.281 17 C -0.112 4.112 18 N -0.225 5.225 19 C -0.039 4.039 20 C -0.072 4.072 21 C 0.300 3.700 22 O -0.368 6.368 23 O -0.282 6.282 24 C -0.057 4.057 25 C -0.461 4.461 26 S 0.507 5.493 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.025 0.975 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.125 0.875 37 H 0.261 0.739 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.118 0.882 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.332 -2.643 25.911 26.149 hybrid contribution -0.943 0.780 0.120 1.230 sum 1.388 -1.863 26.031 26.134 Atomic orbital electron populations 1.22434 0.99683 1.01326 1.01545 1.22158 0.91538 0.90830 1.02962 1.62153 1.59119 1.02136 1.00711 1.19863 0.95111 0.93705 0.84866 1.21110 1.21395 1.21882 0.89854 0.91691 1.24973 0.95334 0.95244 0.99062 1.69945 1.31969 1.29509 1.22501 0.86487 0.80148 0.78685 0.82068 1.20748 1.21315 1.19717 1.21938 0.98058 0.99907 0.89265 1.21687 0.81575 0.83354 0.83241 1.90591 1.34088 1.26802 1.83610 1.43176 1.46374 1.35514 1.03049 1.23412 0.99605 0.98629 0.89571 1.66023 1.28136 1.30858 0.97443 1.18880 0.96918 0.94160 0.93966 1.19781 1.05906 0.89830 0.91662 1.23477 0.74675 0.90950 0.80864 1.90735 1.42135 1.62695 1.41213 1.86476 1.81100 1.28072 1.32579 1.23240 1.01269 0.77952 1.03223 1.27224 1.09884 1.07225 1.01803 1.85133 1.38945 1.26894 0.98281 0.91138 0.93108 0.94235 0.89721 0.91186 0.97500 0.95521 0.92922 0.91454 0.87538 0.73911 0.86164 0.86040 0.88152 0.91958 0.91859 0.80764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.31 9.26 37.16 0.34 -2.96 16 2 C 0.05 1.03 5.55 -3.83 -0.02 1.01 16 3 N -0.52 -10.70 4.43 -237.52 -1.05 -11.76 16 4 C 0.19 4.63 4.54 -4.97 -0.02 4.61 16 5 C -0.50 -13.77 8.40 -34.44 -0.29 -14.06 16 6 H 0.06 1.80 7.42 -52.49 -0.39 1.41 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -25.95 13.29 55.43 0.74 -25.21 16 9 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.04 0.65 5.23 -4.97 -0.03 0.62 16 14 C 0.51 7.94 7.51 -10.99 -0.08 7.86 16 15 O -0.48 -8.59 11.78 5.55 0.07 -8.52 16 16 N -0.63 -8.33 5.40 -13.07 -0.07 -8.40 16 17 C 0.26 3.63 8.19 -87.34 -0.72 2.91 16 18 N -0.50 -7.04 9.73 -11.28 -0.11 -7.15 16 19 C 0.09 1.09 5.63 -84.20 -0.47 0.62 16 20 C -0.03 -0.25 6.30 -29.04 -0.18 -0.44 16 21 C 0.46 4.92 7.92 36.01 0.29 5.20 16 22 O -0.48 -7.08 15.20 -18.75 -0.28 -7.36 16 23 O -0.36 -3.27 10.57 -39.26 -0.41 -3.68 16 24 C 0.04 0.25 10.56 101.05 1.07 1.32 16 25 C -0.32 -3.35 11.05 29.05 0.32 -3.03 16 26 S 0.26 3.35 20.22 -107.50 -2.17 1.18 16 27 H 0.07 1.39 6.26 -51.93 -0.32 1.07 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.61 6.35 -51.93 -0.33 0.28 16 30 H 0.08 1.80 7.01 -51.93 -0.36 1.44 16 31 H 0.07 1.31 5.86 -51.93 -0.30 1.00 16 32 H 0.01 0.19 5.99 -51.93 -0.31 -0.13 16 33 H 0.03 0.69 7.90 -51.93 -0.41 0.28 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.07 0.97 6.06 -51.93 -0.31 0.66 16 36 H 0.11 1.59 7.91 -51.93 -0.41 1.18 16 37 H 0.42 4.52 8.82 -40.82 -0.36 4.16 16 38 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.12 0.56 8.03 -51.93 -0.42 0.14 16 40 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 42 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 43 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 371.73 15.07 5.60 5.60 Total: -1.00 -34.46 371.73 -8.22 -42.69 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.61 Total: 1.10 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 0.11 Total: 5.09 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.50 Total: -52.52 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.63 Total: -19.57 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -2.17 Total: 1.18 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.46 -8.22 -42.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267098775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.806 kcal (2) G-P(sol) polarization free energy of solvation -34.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds