Wall clock time and date at job start Tue Mar 31 2020 23:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45190 * 109.47517 * 2 1 4 4 C 1.34829 * 117.00215 * 179.97438 * 3 2 1 5 5 O 1.21597 * 120.00015 * 0.02562 * 4 3 2 6 6 C 1.46750 * 120.00004 * 179.97438 * 4 3 2 7 7 C 1.41464 * 126.51557 * 0.03421 * 6 4 3 8 8 N 1.30310 * 108.17077 * 179.97438 * 7 6 4 9 9 N 1.39892 * 109.20859 * 0.02562 * 8 7 6 10 10 C 1.46501 * 125.74196 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47174 * 94.54264 * 10 9 8 12 12 H 1.07994 * 119.99929 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99717 * 179.72470 * 11 10 9 14 14 N 1.31521 * 119.99342 * 180.27549 * 13 11 10 15 15 Si 1.86788 * 120.00275 * 0.27158 * 13 11 10 16 16 H 1.48507 * 109.47047 * 90.00244 * 15 13 11 17 17 H 1.48503 * 109.47586 * 210.00065 * 15 13 11 18 18 H 1.48502 * 109.47476 * 330.00485 * 15 13 11 19 19 C 1.34765 * 108.51585 * 0.25773 * 9 8 7 20 20 N 1.38476 * 126.43516 * 179.73823 * 19 9 8 21 21 C 1.34780 * 120.00005 * 78.08818 * 20 19 9 22 22 O 1.21273 * 119.99732 * 4.52701 * 21 20 19 23 23 C 1.50699 * 120.00016 * 184.52550 * 21 20 19 24 24 H 1.08991 * 109.47176 * 324.99876 * 23 21 20 25 25 C 1.53003 * 109.47029 * 85.00198 * 23 21 20 26 26 S 1.81403 * 109.46891 * 205.00009 * 23 21 20 27 27 C 1.81404 * 102.99844 * 175.00242 * 26 23 21 28 28 H 1.09005 * 109.47306 * 300.00295 * 1 2 3 29 29 H 1.08996 * 109.47082 * 59.99790 * 1 2 3 30 30 H 1.08992 * 109.47488 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46871 * 239.99399 * 2 1 3 32 32 H 1.09005 * 109.46548 * 120.00186 * 2 1 3 33 33 H 1.07997 * 125.91663 * 359.97438 * 7 6 4 34 34 H 1.08994 * 109.47217 * 334.54301 * 10 9 8 35 35 H 1.09003 * 109.47003 * 214.53964 * 10 9 8 36 36 H 0.97003 * 119.99466 * 179.97438 * 14 13 11 37 37 H 0.97005 * 120.00384 * 258.08544 * 20 19 9 38 38 H 1.08998 * 109.46947 * 300.00044 * 25 23 21 39 39 H 1.09004 * 109.47099 * 59.99775 * 25 23 21 40 40 H 1.08999 * 109.46926 * 180.02562 * 25 23 21 41 41 H 1.08997 * 109.47169 * 59.99728 * 27 26 23 42 42 H 1.09001 * 109.47016 * 179.97438 * 27 26 23 43 43 H 1.09000 * 109.46832 * 300.00209 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3688 0.0000 4 6 3.3507 1.5454 0.0005 5 8 4.0914 0.5811 0.0005 6 6 3.9117 2.9015 0.0000 7 6 3.1828 4.1139 -0.0004 8 7 4.0346 5.1001 -0.0003 9 7 5.3352 4.5849 -0.0004 10 6 6.5688 5.3753 0.0003 11 6 7.0522 5.5507 1.4168 12 1 6.4961 5.1173 2.2348 13 6 8.2075 6.2603 1.6680 14 7 8.6323 6.4088 2.9038 15 14 9.1691 7.0105 0.2533 16 1 8.6755 8.3870 -0.0059 17 1 10.6108 7.0600 0.6057 18 1 8.9855 6.1814 -0.9649 19 6 5.2625 3.2393 -0.0063 20 7 6.3306 2.3579 -0.0135 21 6 7.0070 2.1096 1.1255 22 8 6.6307 2.5934 2.1719 23 6 8.2310 1.2309 1.0986 24 1 8.0954 0.4415 0.3594 25 6 9.4545 2.0717 0.7282 26 16 8.4795 0.4901 2.7357 27 6 9.8799 -0.6315 2.4677 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 2.1068 4.2063 -0.0007 34 1 6.3742 6.3528 -0.4409 35 1 7.3315 4.8588 -0.5826 36 1 9.4452 6.9077 3.0805 37 1 6.5919 1.9192 -0.8383 38 1 9.3051 2.5169 -0.2554 39 1 9.5901 2.8612 1.4675 40 1 10.3397 1.4360 0.7083 41 1 10.7444 -0.0593 2.1312 42 1 10.1220 -1.1398 3.4011 43 1 9.6149 -1.3689 1.7100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268640498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:06 Heat of formation + Delta-G solvation = -37.967571 kcal Electronic energy + Delta-G solvation = -28431.484671 eV Core-core repulsion = 24412.536786 eV Total energy + Delta-G solvation = -4018.947885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.25868 -39.66848 -39.05382 -36.20399 -34.53987 -33.80034 -33.06862 -32.03751 -31.55249 -29.18103 -28.71151 -27.98370 -24.97293 -23.99616 -22.87545 -22.17457 -21.26435 -20.35124 -19.56428 -17.84152 -17.40925 -17.10629 -16.84472 -16.29849 -16.15011 -15.72443 -14.92336 -14.67935 -14.49071 -14.23735 -13.96642 -13.87423 -13.59419 -13.48742 -13.38418 -13.15415 -12.87121 -12.80110 -12.56236 -12.27265 -12.15802 -11.88897 -11.78244 -11.61699 -11.57400 -11.23739 -11.01031 -10.77549 -10.43656 -10.40516 -9.99438 -9.78108 -9.70793 -9.56090 -9.32248 -8.79339 -8.78853 -8.22705 -7.47469 -6.23367 -4.27721 1.49437 1.68978 2.44545 2.61672 2.63169 2.93551 3.08766 3.13376 3.14374 3.19175 3.48225 3.60741 4.17611 4.72113 4.88457 4.89906 4.92839 4.96039 5.06841 5.07731 5.12629 5.16732 5.23670 5.24300 5.50471 5.57052 5.63382 5.68554 5.71473 5.80389 5.86512 6.01924 6.16988 6.29809 6.34754 6.49883 6.66200 6.87334 7.19072 7.36269 7.50707 8.03038 8.19017 8.27041 8.47559 8.92662 9.28060 10.88452 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009046 B = 0.004968 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3094.513528 B = 5634.349488 C = 8087.859923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 O -0.356 6.356 4 C 0.551 3.449 5 O -0.524 6.524 6 C -0.299 4.299 7 C 0.091 3.909 8 N -0.277 5.277 9 N -0.301 5.301 10 C 0.223 3.777 11 C -0.539 4.539 12 H 0.094 0.906 13 C 0.085 3.915 14 N -0.874 5.874 15 Si 0.862 3.138 16 H -0.270 1.270 17 H -0.279 1.279 18 H -0.267 1.267 19 C 0.391 3.609 20 N -0.657 5.657 21 C 0.545 3.455 22 O -0.460 6.460 23 C -0.082 4.082 24 H 0.105 0.895 25 C -0.144 4.144 26 S -0.179 6.179 27 C -0.141 4.141 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.193 0.807 34 H 0.055 0.945 35 H 0.045 0.955 36 H 0.268 0.732 37 H 0.414 0.586 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.509 -14.129 -9.389 17.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.274 6.274 4 C 0.398 3.602 5 O -0.414 6.414 6 C -0.315 4.315 7 C -0.096 4.096 8 N -0.099 5.099 9 N -0.080 5.080 10 C 0.104 3.896 11 C -0.577 4.577 12 H 0.112 0.888 13 C -0.120 4.120 14 N -0.510 5.510 15 Si 0.688 3.312 16 H -0.195 1.195 17 H -0.204 1.204 18 H -0.192 1.192 19 C 0.161 3.839 20 N -0.312 5.312 21 C 0.329 3.671 22 O -0.327 6.327 23 C -0.214 4.214 24 H 0.123 0.877 25 C -0.203 4.203 26 S 0.046 5.954 27 C -0.310 4.310 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.209 0.791 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.253 0.747 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.120 0.880 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.666 -12.431 -7.492 15.246 hybrid contribution 1.439 -0.964 -2.215 2.812 sum -3.227 -13.395 -9.707 16.855 Atomic orbital electron populations 1.21792 0.92924 1.02633 1.03507 1.22915 0.94983 0.80681 1.02353 1.86546 1.24192 1.31582 1.85045 1.19760 0.79988 0.88394 0.72076 1.90801 1.60261 1.42285 1.48087 1.18844 0.91286 0.91810 1.29572 1.23863 0.99969 0.88418 0.97306 1.77243 0.86633 1.22170 1.23804 1.49514 1.07362 1.03343 1.47748 1.20252 0.77048 0.91443 1.00842 1.21142 1.10266 1.36155 0.90145 0.88780 1.24730 0.96520 0.95318 0.95396 1.69885 1.22878 1.39719 1.18533 0.87095 0.80384 0.80826 0.82857 1.19520 1.20429 1.19215 1.17498 0.87043 0.82473 0.96860 1.42219 1.31823 1.44440 1.12743 1.19554 0.83069 0.81056 0.83426 1.90872 1.65308 1.47118 1.29369 1.23167 0.97593 1.00715 0.99899 0.87728 1.22025 0.94162 1.00543 1.03593 1.87564 1.42496 1.51635 1.13673 1.23535 1.00005 1.01358 1.06077 0.91447 0.91558 0.90551 0.91566 0.91439 0.79054 0.92750 0.93711 0.92169 0.74741 0.91317 0.89240 0.91578 0.90398 0.87977 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.29 37.16 0.38 -0.84 16 2 C 0.06 0.74 6.20 37.16 0.23 0.97 16 3 O -0.36 -5.23 10.07 -40.84 -0.41 -5.64 16 4 C 0.55 9.63 7.94 34.17 0.27 9.90 16 5 O -0.52 -9.82 16.09 -19.34 -0.31 -10.13 16 6 C -0.30 -5.59 6.15 -104.86 -0.64 -6.23 16 7 C 0.09 1.59 11.86 -16.97 -0.20 1.39 16 8 N -0.28 -5.74 12.47 30.88 0.39 -5.36 16 9 N -0.30 -6.58 3.58 -61.12 -0.22 -6.80 16 10 C 0.22 5.14 5.14 -5.19 -0.03 5.11 16 11 C -0.54 -14.86 9.43 -34.44 -0.32 -15.19 16 12 H 0.09 3.06 7.37 -52.49 -0.39 2.67 16 13 C 0.09 2.34 5.47 -17.82 -0.10 2.25 16 14 N -0.87 -25.90 13.96 55.43 0.77 -25.12 16 15 Si 0.86 19.56 27.47 -169.99 -4.67 14.89 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.27 -5.59 6.54 56.52 0.37 -5.22 16 19 C 0.39 7.83 6.48 -153.43 -0.99 6.84 16 20 N -0.66 -11.66 4.52 -11.08 -0.05 -11.71 16 21 C 0.55 10.78 6.91 -10.98 -0.08 10.70 16 22 O -0.46 -11.55 14.89 5.56 0.08 -11.47 16 23 C -0.08 -1.26 3.18 -27.88 -0.09 -1.35 16 24 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 25 C -0.14 -2.07 9.08 37.16 0.34 -1.73 16 26 S -0.18 -2.92 21.10 -107.50 -2.27 -5.19 16 27 C -0.14 -1.49 10.45 101.05 1.06 -0.43 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.19 2.54 8.06 -52.49 -0.42 2.12 16 34 H 0.05 1.23 7.58 -51.93 -0.39 0.84 16 35 H 0.05 0.97 7.19 -51.93 -0.37 0.59 16 36 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.41 5.67 8.82 -40.82 -0.36 5.31 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.07 0.74 6.92 -51.93 -0.36 0.38 16 41 H 0.08 0.75 7.14 -51.93 -0.37 0.38 16 42 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 43 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 386.26 15.07 5.82 5.82 Total: -1.00 -35.51 386.26 -7.10 -42.62 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.06 Total: 6.72 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -0.18 Total: 11.38 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.89 Total: -48.99 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.64 Total: -27.24 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.67 Total: 14.89 kcal Atomic # 16 Polarization: -2.92 SS G_CDS: -2.27 Total: -5.19 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.51 -7.10 -42.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268640498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.649 kcal (2) G-P(sol) polarization free energy of solvation -35.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds