Wall clock time and date at job start Tue Mar 31 2020 23:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45199 * 109.46632 * 2 1 4 4 C 1.34828 * 116.99703 * 179.97438 * 3 2 1 5 5 O 1.21595 * 120.00298 * 0.02562 * 4 3 2 6 6 C 1.46751 * 120.00250 * 180.02562 * 4 3 2 7 7 C 1.41472 * 126.50940 * 0.02562 * 6 4 3 8 8 N 1.30310 * 108.16695 * 179.97438 * 7 6 4 9 9 N 1.39891 * 109.20956 * 359.97438 * 8 7 6 10 10 C 1.46502 * 125.74219 * 180.02562 * 9 8 7 11 11 C 1.50693 * 109.47278 * 94.56354 * 10 9 8 12 12 H 1.08003 * 120.00275 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00196 * 179.72339 * 11 10 9 14 14 N 1.31516 * 120.00240 * 180.27931 * 13 11 10 15 15 Si 1.86807 * 119.99843 * 0.27466 * 13 11 10 16 16 H 1.48497 * 109.46505 * 90.00134 * 15 13 11 17 17 H 1.48494 * 109.47198 * 209.99869 * 15 13 11 18 18 H 1.48501 * 109.47047 * 330.00273 * 15 13 11 19 19 C 1.34767 * 108.51353 * 0.26789 * 9 8 7 20 20 N 1.38480 * 126.43025 * 179.73020 * 19 9 8 21 21 C 1.34780 * 119.99873 * 78.05357 * 20 19 9 22 22 O 1.21273 * 119.99732 * 4.53742 * 21 20 19 23 23 C 1.50699 * 120.00016 * 184.53591 * 21 20 19 24 24 H 1.09000 * 109.47218 * 39.99966 * 23 21 20 25 25 C 1.52998 * 109.47101 * 279.99959 * 23 21 20 26 26 S 1.81405 * 109.47071 * 160.00027 * 23 21 20 27 27 C 1.81399 * 102.99981 * 184.99877 * 26 23 21 28 28 H 1.08997 * 109.47232 * 59.99869 * 1 2 3 29 29 H 1.09002 * 109.46755 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47181 * 299.99798 * 1 2 3 31 31 H 1.09003 * 109.46941 * 240.00495 * 2 1 3 32 32 H 1.08993 * 109.47016 * 119.99692 * 2 1 3 33 33 H 1.08003 * 125.91557 * 359.97438 * 7 6 4 34 34 H 1.09003 * 109.47256 * 334.56140 * 10 9 8 35 35 H 1.09001 * 109.47267 * 214.56659 * 10 9 8 36 36 H 0.97000 * 120.00029 * 180.02562 * 14 13 11 37 37 H 0.96996 * 120.00566 * 258.04740 * 20 19 9 38 38 H 1.09000 * 109.47178 * 180.02562 * 25 23 21 39 39 H 1.09000 * 109.47090 * 300.00085 * 25 23 21 40 40 H 1.08996 * 109.47295 * 60.00066 * 25 23 21 41 41 H 1.08997 * 109.47494 * 299.99938 * 27 26 23 42 42 H 1.09004 * 109.46832 * 60.00366 * 27 26 23 43 43 H 1.09000 * 109.47097 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3506 1.5457 0.0005 5 8 4.0914 0.5815 0.0005 6 6 3.9115 2.9018 0.0011 7 6 3.1825 4.1142 0.0017 8 7 4.0342 5.1004 0.0027 9 7 5.3348 4.5853 0.0034 10 6 6.5683 5.3758 0.0051 11 6 7.0510 5.5505 1.4218 12 1 6.4950 5.1158 2.2393 13 6 8.2061 6.2600 1.6741 14 7 8.6304 6.4078 2.9101 15 14 9.1684 7.0112 0.2601 16 1 8.6747 8.3876 0.0016 17 1 10.6098 7.0605 0.6134 18 1 8.9854 6.1826 -0.9586 19 6 5.2621 3.2396 -0.0032 20 7 6.3304 2.3584 -0.0101 21 6 7.0066 2.1103 1.1291 22 8 6.6298 2.5939 2.1755 23 6 8.2308 1.2319 1.1026 24 1 8.8174 1.4530 0.2109 25 6 7.8040 -0.2372 1.0809 26 16 9.2342 1.5484 2.5803 27 6 10.7098 0.5321 2.2969 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 2.1064 4.2064 0.0014 34 1 6.3739 6.3536 -0.4357 35 1 7.3313 4.8598 -0.5778 36 1 9.4427 6.9072 3.0876 37 1 6.5919 1.9197 -0.8346 38 1 8.6895 -0.8726 1.0622 39 1 7.2174 -0.4583 1.9726 40 1 7.2011 -0.4274 0.1930 41 1 10.4183 -0.5141 2.2047 42 1 11.2022 0.8543 1.3793 43 1 11.3960 0.6458 3.1361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268640501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:10 Heat of formation + Delta-G solvation = -36.618619 kcal Electronic energy + Delta-G solvation = -28424.903885 eV Core-core repulsion = 24406.014495 eV Total energy + Delta-G solvation = -4018.889390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.25483 -39.68035 -39.05604 -36.21796 -34.53603 -33.78612 -33.09768 -32.01549 -31.54618 -29.16393 -28.64114 -27.95602 -24.97252 -24.02093 -22.85492 -22.19539 -21.24610 -20.37897 -19.54989 -17.83292 -17.37620 -17.07351 -16.83579 -16.31734 -16.14664 -15.70717 -15.00820 -14.68397 -14.27681 -14.17962 -13.96654 -13.91990 -13.62111 -13.46239 -13.41428 -13.21338 -12.83972 -12.71378 -12.51543 -12.23156 -12.17516 -11.90637 -11.88715 -11.64220 -11.61142 -11.19224 -10.98692 -10.74114 -10.42587 -10.39339 -9.99668 -9.74882 -9.55818 -9.53386 -9.31861 -8.78328 -8.71982 -8.22053 -7.34090 -6.16998 -4.21201 1.50738 1.76468 2.47067 2.63927 2.72812 2.93783 3.06608 3.14395 3.18506 3.23763 3.49139 3.62219 4.23789 4.71426 4.87968 4.88421 4.90853 4.95667 5.05708 5.11654 5.18463 5.21563 5.23301 5.24674 5.49480 5.52298 5.62480 5.64694 5.69659 5.79027 5.85203 6.01397 6.08424 6.19516 6.32986 6.51700 6.64822 6.88067 7.24348 7.37195 7.51455 8.03461 8.18146 8.32488 8.47935 8.97818 9.34671 10.94985 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009761 B = 0.004817 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.946401 B = 5811.939393 C = 8105.791742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.356 6.356 4 C 0.552 3.448 5 O -0.525 6.525 6 C -0.301 4.301 7 C 0.090 3.910 8 N -0.277 5.277 9 N -0.300 5.300 10 C 0.223 3.777 11 C -0.541 4.541 12 H 0.094 0.906 13 C 0.088 3.912 14 N -0.871 5.871 15 Si 0.863 3.137 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.268 1.268 19 C 0.391 3.609 20 N -0.657 5.657 21 C 0.546 3.454 22 O -0.460 6.460 23 C -0.091 4.091 24 H 0.106 0.894 25 C -0.139 4.139 26 S -0.156 6.156 27 C -0.148 4.148 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.192 0.808 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.267 0.733 37 H 0.414 0.586 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.123 -14.922 -9.184 18.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.274 6.274 4 C 0.399 3.601 5 O -0.416 6.416 6 C -0.316 4.316 7 C -0.096 4.096 8 N -0.098 5.098 9 N -0.079 5.079 10 C 0.104 3.896 11 C -0.579 4.579 12 H 0.112 0.888 13 C -0.117 4.117 14 N -0.507 5.507 15 Si 0.690 3.310 16 H -0.196 1.196 17 H -0.204 1.204 18 H -0.193 1.193 19 C 0.161 3.839 20 N -0.313 5.313 21 C 0.330 3.670 22 O -0.327 6.327 23 C -0.223 4.223 24 H 0.124 0.876 25 C -0.198 4.198 26 S 0.070 5.930 27 C -0.317 4.317 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.209 0.791 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.252 0.748 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.932 -12.736 -7.356 15.512 hybrid contribution 1.106 -1.465 -2.147 2.824 sum -3.827 -14.201 -9.502 17.510 Atomic orbital electron populations 1.21794 0.92932 1.02631 1.03523 1.22911 0.94992 0.80687 1.02308 1.86553 1.24216 1.31558 1.85032 1.19755 0.79965 0.88391 0.72015 1.90784 1.60257 1.42300 1.48229 1.18836 0.91280 0.91797 1.29723 1.23865 0.99960 0.88439 0.97341 1.77246 0.86647 1.22183 1.23758 1.49539 1.07377 1.03363 1.47575 1.20263 0.76960 0.91396 1.00939 1.21099 1.10415 1.36343 0.90021 0.88840 1.24701 0.96388 0.95260 0.95360 1.69868 1.22809 1.39520 1.18522 0.87080 0.80470 0.80591 0.82892 1.19637 1.20428 1.19325 1.17495 0.87021 0.82500 0.96848 1.42203 1.31982 1.44370 1.12706 1.19548 0.83344 0.80698 0.83440 1.90868 1.65511 1.46891 1.29420 1.23221 0.97722 0.99170 1.02198 0.87567 1.21991 1.02190 0.91407 1.04261 1.88099 1.17074 1.61279 1.26546 1.23573 0.99958 1.02260 1.05912 0.91549 0.90557 0.91442 0.91566 0.91482 0.79078 0.92782 0.93760 0.92215 0.74756 0.91581 0.90618 0.90879 0.90800 0.90791 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.16 0.38 -0.81 16 2 C 0.07 0.72 6.20 37.16 0.23 0.95 16 3 O -0.36 -5.13 10.07 -40.84 -0.41 -5.54 16 4 C 0.55 9.42 7.94 34.17 0.27 9.69 16 5 O -0.53 -9.46 16.09 -19.34 -0.31 -9.77 16 6 C -0.30 -5.56 6.15 -104.86 -0.64 -6.20 16 7 C 0.09 1.58 11.86 -16.97 -0.20 1.38 16 8 N -0.28 -5.76 12.47 30.88 0.39 -5.38 16 9 N -0.30 -6.62 3.58 -61.13 -0.22 -6.83 16 10 C 0.22 5.25 5.14 -5.20 -0.03 5.22 16 11 C -0.54 -15.21 9.42 -34.44 -0.32 -15.54 16 12 H 0.09 3.08 7.36 -52.48 -0.39 2.70 16 13 C 0.09 2.48 5.47 -17.82 -0.10 2.38 16 14 N -0.87 -26.31 13.96 55.43 0.77 -25.53 16 15 Si 0.86 20.11 27.47 -169.99 -4.67 15.44 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.27 -5.81 6.54 56.52 0.37 -5.44 16 19 C 0.39 7.84 6.48 -153.43 -0.99 6.84 16 20 N -0.66 -11.64 4.52 -11.08 -0.05 -11.69 16 21 C 0.55 10.77 6.96 -10.98 -0.08 10.69 16 22 O -0.46 -11.54 14.79 5.56 0.08 -11.45 16 23 C -0.09 -1.40 3.18 -27.88 -0.09 -1.49 16 24 H 0.11 1.36 8.14 -51.92 -0.42 0.93 16 25 C -0.14 -1.70 9.08 37.16 0.34 -1.36 16 26 S -0.16 -2.73 21.04 -107.50 -2.26 -4.99 16 27 C -0.15 -1.70 10.45 101.05 1.06 -0.65 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.19 2.53 8.06 -52.48 -0.42 2.11 16 34 H 0.05 1.25 7.58 -51.93 -0.39 0.85 16 35 H 0.04 0.99 7.19 -51.93 -0.37 0.61 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.41 5.65 8.82 -40.82 -0.36 5.29 16 38 H 0.07 0.64 6.92 -51.93 -0.36 0.28 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.70 7.14 -51.93 -0.37 0.33 16 42 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 43 H 0.10 1.08 8.14 -51.92 -0.42 0.66 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -35.95 386.14 -7.10 -43.05 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.06 Total: 5.77 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -0.18 Total: 11.11 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.89 Total: -49.44 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.64 Total: -26.76 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.67 Total: 15.44 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -2.26 Total: -4.99 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.95 -7.10 -43.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268640501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.431 kcal (2) G-P(sol) polarization free energy of solvation -35.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds