Wall clock time and date at job start Tue Mar 31 2020 23:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45203 * 109.46640 * 2 1 4 4 C 1.34230 * 116.99618 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00428 * 0.02562 * 4 3 2 6 6 C 1.50709 * 119.99950 * 179.97438 * 4 3 2 7 7 C 1.53005 * 109.46618 * 60.00389 * 6 4 3 8 8 C 1.53000 * 109.47097 * 300.00387 * 6 4 3 9 9 N 1.46494 * 109.47212 * 180.02562 * 6 4 3 10 10 C 1.35814 * 126.05082 * 45.00460 * 9 6 4 11 11 C 1.35755 * 107.56144 * 180.02562 * 10 9 6 12 12 N 1.40765 * 126.08137 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99854 * 179.97438 * 12 11 10 14 14 O 1.21303 * 120.00450 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 179.72930 * 13 12 11 16 16 S 1.80997 * 109.47151 * 180.27780 * 15 13 12 17 17 C 1.76202 * 100.00066 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00172 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99989 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00063 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99961 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47010 * 89.99813 * 21 19 17 23 23 H 1.48501 * 109.47100 * 209.99758 * 21 19 17 24 24 H 1.48493 * 109.46842 * 329.99926 * 21 19 17 25 25 C 1.40256 * 107.84136 * 0.24533 * 11 10 9 26 26 N 1.30835 * 108.33208 * 359.58580 * 25 11 10 27 27 H 1.09000 * 109.46639 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47378 * 299.99366 * 1 2 3 29 29 H 1.08994 * 109.47517 * 59.99728 * 1 2 3 30 30 H 1.09006 * 109.47151 * 240.00490 * 2 1 3 31 31 H 1.08994 * 109.47517 * 120.00272 * 2 1 3 32 32 H 1.09002 * 109.46590 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47027 * 299.99704 * 7 6 4 34 34 H 1.09000 * 109.47134 * 60.00184 * 7 6 4 35 35 H 1.08992 * 109.47260 * 299.99730 * 8 6 4 36 36 H 1.08999 * 109.46781 * 60.00157 * 8 6 4 37 37 H 1.09002 * 109.46617 * 179.97438 * 8 6 4 38 38 H 1.07992 * 126.22132 * 0.06522 * 10 9 6 39 39 H 0.97001 * 119.99661 * 0.02562 * 12 11 10 40 40 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 41 41 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 42 42 H 0.96999 * 119.99741 * 179.97438 * 20 19 17 43 43 H 1.07995 * 125.83761 * 179.76181 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9376 0.0000 7 6 3.4484 3.6852 1.2487 8 6 3.4496 3.6838 -1.2499 9 7 5.3836 2.8610 0.0001 10 6 6.1412 2.0436 -0.7760 11 6 7.4428 2.2799 -0.4711 12 7 8.5580 1.6430 -1.0474 13 6 9.8028 1.9748 -0.6511 14 8 9.9621 2.8219 0.2024 15 6 10.9965 1.2886 -1.2636 16 16 12.5135 1.9417 -0.5232 17 6 13.7136 0.9921 -1.3966 18 1 13.3978 0.2698 -2.1347 19 6 15.0650 1.1731 -1.1366 20 7 15.4501 2.0546 -0.2379 21 14 16.3374 0.1669 -2.0629 22 1 16.7330 0.8871 -3.2999 23 1 17.5316 -0.0334 -1.2033 24 1 15.7589 -1.1527 -2.4221 25 6 7.4785 3.2671 0.5245 26 7 6.2486 3.6173 0.8011 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8647 4.6926 1.2481 33 1 2.3599 3.7422 1.2481 34 1 3.7840 3.1535 2.1391 35 1 3.7859 3.1513 -2.1394 36 1 2.3611 3.7408 -1.2503 37 1 3.8658 4.6912 -1.2500 38 1 5.7749 1.3348 -1.5038 39 1 8.4307 0.9659 -1.7301 40 1 10.9341 0.2163 -1.0780 41 1 11.0089 1.4712 -2.3381 42 1 16.3945 2.1808 -0.0560 43 1 8.3691 3.6714 0.9824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268980520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:26 Heat of formation + Delta-G solvation = -34.490630 kcal Electronic energy + Delta-G solvation = -26622.361294 eV Core-core repulsion = 22603.564180 eV Total energy + Delta-G solvation = -4018.797114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.82235 -40.74775 -39.02776 -37.28881 -36.08697 -34.21378 -32.42129 -32.21846 -30.59291 -30.06083 -28.16715 -27.53167 -25.47209 -25.27797 -23.48561 -22.24450 -21.59780 -20.74543 -19.46231 -18.00075 -17.79996 -17.75005 -17.12166 -16.74345 -16.15604 -15.68712 -15.21063 -14.90306 -14.79578 -14.53693 -14.38353 -14.10663 -14.00608 -13.35972 -13.31018 -13.24895 -13.02612 -12.75651 -12.71269 -12.67579 -12.51220 -12.44961 -12.19409 -12.10253 -11.90127 -11.09144 -11.05744 -11.01760 -10.98412 -10.76634 -10.71384 -10.51122 -9.82092 -9.41810 -9.39081 -9.05836 -8.24155 -7.62837 -6.49309 -6.21059 -3.91608 1.45958 1.56672 1.91040 2.39252 2.66854 3.05529 3.23287 3.29157 3.33517 3.39423 3.71019 3.87826 4.07305 4.17307 4.20697 4.38130 4.41223 4.65878 4.71897 4.95412 5.02222 5.05454 5.08055 5.14262 5.15324 5.21856 5.23646 5.27104 5.40765 5.51226 5.55649 5.59001 5.74422 5.77940 5.84363 5.86747 6.11850 6.32972 6.77743 7.02279 7.14816 7.56037 7.60597 7.76835 8.35888 8.55129 9.24368 10.86322 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.027279 B = 0.001917 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.169296 B =14599.889647 C =15263.514394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.349 6.349 4 C 0.457 3.543 5 O -0.486 6.486 6 C 0.212 3.788 7 C -0.142 4.142 8 C -0.157 4.157 9 N -0.373 5.373 10 C 0.034 3.966 11 C 0.014 3.986 12 N -0.651 5.651 13 C 0.535 3.465 14 O -0.506 6.506 15 C -0.152 4.152 16 S -0.055 6.055 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.062 3.938 26 N -0.281 5.281 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.170 0.830 39 H 0.408 0.592 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.268 0.732 43 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.868 -1.203 -2.667 32.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.265 6.265 4 C 0.297 3.703 5 O -0.371 6.371 6 C 0.126 3.874 7 C -0.200 4.200 8 C -0.215 4.215 9 N -0.160 5.160 10 C -0.112 4.112 11 C -0.090 4.090 12 N -0.298 5.298 13 C 0.322 3.678 14 O -0.379 6.379 15 C -0.302 4.302 16 S 0.171 5.829 17 C -0.685 4.685 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.126 4.126 26 N -0.101 5.101 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.187 0.813 39 H 0.243 0.757 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -33.074 0.691 -0.457 33.084 hybrid contribution 1.191 -2.965 -2.515 4.066 sum -31.883 -2.274 -2.972 32.102 Atomic orbital electron populations 1.21816 0.92140 1.03282 1.03699 1.23141 0.95615 0.79517 1.03005 1.86470 1.23199 1.33064 1.83803 1.23605 0.81442 0.92136 0.73142 1.90754 1.60174 1.42415 1.43757 1.19879 0.76435 0.89860 1.01268 1.21949 1.02116 1.01924 0.93997 1.22294 1.03078 1.01597 0.94541 1.47928 1.03670 1.32371 1.32024 1.21685 0.89686 0.99234 1.00569 1.17752 0.86560 1.02158 1.02534 1.42974 1.03563 1.41396 1.41865 1.20390 0.82887 0.82452 0.82040 1.90571 1.84935 1.31662 1.30780 1.23509 0.98782 1.03642 1.04301 1.85401 0.91316 1.53086 1.53066 1.22871 0.92882 1.26129 1.26590 0.90871 1.24990 0.97743 0.95534 0.95296 1.70016 1.16699 1.32507 1.31007 0.86165 0.80045 0.79943 0.79331 1.20278 1.20757 1.19705 1.24691 0.95837 0.95802 0.96240 1.77369 0.99595 1.17718 1.15429 0.89961 0.91284 0.91302 0.90915 0.90928 0.89014 0.89564 0.90995 0.91269 0.89083 0.89585 0.81273 0.75727 0.88901 0.88908 0.92168 0.77183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 10.29 37.16 0.38 -0.13 16 2 C 0.06 0.36 6.19 37.16 0.23 0.59 16 3 O -0.35 -2.63 10.03 -39.26 -0.39 -3.03 16 4 C 0.46 4.44 6.49 36.01 0.23 4.68 16 5 O -0.49 -6.15 14.22 -18.75 -0.27 -6.42 16 6 C 0.21 1.93 1.18 -132.97 -0.16 1.78 16 7 C -0.14 -1.09 8.02 37.16 0.30 -0.79 16 8 C -0.16 -1.00 8.66 37.16 0.32 -0.68 16 9 N -0.37 -4.69 3.36 -49.40 -0.17 -4.86 16 10 C 0.03 0.44 9.67 -16.68 -0.16 0.28 16 11 C 0.01 0.22 6.90 -83.88 -0.58 -0.36 16 12 N -0.65 -9.62 5.47 -10.03 -0.05 -9.67 16 13 C 0.54 10.05 7.82 -10.98 -0.09 9.97 16 14 O -0.51 -11.13 13.02 5.54 0.07 -11.06 16 15 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 16 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 17 C -0.54 -15.21 9.50 30.94 0.29 -14.91 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 21 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.06 1.03 10.84 -17.22 -0.19 0.84 16 26 N -0.28 -4.20 11.65 30.70 0.36 -3.84 16 27 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 32 H 0.09 0.72 8.05 -51.93 -0.42 0.30 16 33 H 0.09 0.43 8.11 -51.93 -0.42 0.01 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.38 8.11 -51.93 -0.42 -0.04 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.17 1.82 7.49 -52.49 -0.39 1.42 16 39 H 0.41 4.58 8.83 -40.82 -0.36 4.22 16 40 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.21 3.77 5.92 -52.49 -0.31 3.46 16 LS Contribution 383.64 15.07 5.78 5.78 Total: -1.00 -36.10 383.64 -6.55 -42.65 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.10 Total: 2.65 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 0.72 Total: 0.47 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.87 Total: -43.73 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.59 Total: -20.50 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.10 -6.55 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268980520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.163 kcal (2) G-P(sol) polarization free energy of solvation -36.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds