Wall clock time and date at job start Tue Mar 31 2020 23:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81401 * 109.46982 * 2 1 4 4 O 1.42100 * 110.54240 * 73.33290 * 3 2 1 5 5 O 1.42097 * 110.54586 * 296.58222 * 3 2 1 6 6 N 1.65598 * 104.44971 * 184.95630 * 3 2 1 7 7 C 1.39925 * 120.00232 * 298.74265 * 6 3 2 8 8 C 1.38881 * 120.00463 * 133.81868 * 7 6 3 9 9 C 1.38072 * 119.99205 * 180.30290 * 8 7 6 10 10 C 1.38837 * 120.00449 * 359.44710 * 9 8 7 11 11 N 1.40199 * 119.99598 * 180.27791 * 10 9 8 12 12 C 1.34772 * 120.00367 * 213.56054 * 11 10 9 13 13 O 1.21594 * 119.99832 * 5.15895 * 12 11 10 14 14 N 1.34770 * 120.00576 * 185.15120 * 12 11 10 15 15 C 1.46499 * 120.00578 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47219 * 180.02562 * 15 14 12 17 17 C 1.50705 * 109.47159 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99617 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00176 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00297 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00007 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47438 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47150 * 120.00268 * 21 19 17 24 24 H 1.48501 * 109.47282 * 239.99998 * 21 19 17 25 25 C 1.38838 * 120.01127 * 0.55184 * 10 9 8 26 26 C 1.38075 * 120.00410 * 359.73058 * 25 10 9 27 27 H 1.08991 * 109.47018 * 60.00350 * 1 2 3 28 28 H 1.09003 * 109.46966 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47157 * 299.99583 * 1 2 3 30 30 H 1.08995 * 109.47547 * 239.99827 * 2 1 3 31 31 H 1.09005 * 109.47040 * 119.99563 * 2 1 3 32 32 H 0.96995 * 120.00010 * 118.74692 * 6 3 2 33 33 H 1.07998 * 120.00124 * 0.02961 * 8 7 6 34 34 H 1.07996 * 119.99312 * 179.72411 * 9 8 7 35 35 H 0.97003 * 119.99976 * 33.56571 * 11 10 9 36 36 H 0.97007 * 119.99890 * 0.02562 * 14 12 11 37 37 H 1.08999 * 109.47454 * 300.00657 * 15 14 12 38 38 H 1.08997 * 109.46737 * 60.00269 * 15 14 12 39 39 H 1.08998 * 109.47423 * 299.99789 * 16 15 14 40 40 H 1.08997 * 109.47221 * 60.00351 * 16 15 14 41 41 H 0.96998 * 120.00274 * 180.02562 * 20 19 17 42 42 H 1.08003 * 119.99966 * 179.69602 * 25 10 9 43 43 H 1.08003 * 120.00289 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.9410 2.3076 1.2747 5 8 1.7395 2.3789 -1.1899 6 7 3.7786 1.5674 -0.1385 7 6 4.5082 0.8961 0.8488 8 6 5.4730 -0.0351 0.4870 9 6 6.1885 -0.7019 1.4617 10 6 5.9515 -0.4332 2.8030 11 7 6.6822 -1.1061 3.7924 12 6 6.1019 -1.4076 4.9708 13 8 4.9196 -1.1808 5.1420 14 7 6.8319 -1.9606 5.9596 15 6 6.2011 -2.2888 7.2404 16 6 7.2426 -2.8993 8.1803 17 6 6.5935 -3.2376 9.4976 18 1 5.5430 -3.0375 9.6491 19 6 7.3403 -3.8034 10.5090 20 7 8.6194 -4.0475 10.3244 21 14 6.5355 -4.2233 12.1416 22 1 5.0981 -3.8534 12.0946 23 1 6.6630 -5.6808 12.3960 24 1 7.2055 -3.4701 13.2320 25 6 4.9871 0.4977 3.1649 26 6 4.2673 1.1605 2.1908 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.2358 1.9490 -0.9041 33 1 5.6605 -0.2408 -0.5565 34 1 6.9356 -1.4292 1.1804 35 1 7.6054 -1.3546 3.6288 36 1 7.7752 -2.1413 5.8232 37 1 5.7950 -1.3819 7.6884 38 1 5.3958 -3.0047 7.0758 39 1 7.6489 -3.8062 7.7325 40 1 8.0476 -2.1832 8.3448 41 1 9.1448 -4.4459 11.0359 42 1 4.7995 0.7030 4.2085 43 1 3.5168 1.8844 2.4723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273257970.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:08 Heat of formation + Delta-G solvation = -78.468024 kcal Electronic energy + Delta-G solvation = -26428.205304 eV Core-core repulsion = 22407.501187 eV Total energy + Delta-G solvation = -4020.704117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.60730 -39.12904 -37.50165 -36.40832 -36.05767 -34.84421 -33.70385 -33.58089 -32.81395 -31.15016 -29.82146 -27.96818 -24.83190 -24.52057 -23.31813 -22.62780 -21.07211 -20.67659 -19.78761 -18.60410 -18.09508 -17.91041 -17.51948 -16.76686 -16.37181 -16.05183 -15.61807 -14.96204 -14.80242 -14.69508 -14.53211 -14.25282 -13.83030 -13.77115 -13.68108 -13.41903 -13.23194 -12.98646 -12.90415 -12.52468 -12.41053 -12.32663 -12.21287 -12.00814 -11.83860 -11.24517 -11.09915 -11.05106 -10.73675 -10.65511 -10.41136 -10.08589 -9.98793 -9.63849 -9.30795 -9.14150 -8.65710 -8.43630 -7.94093 -6.13452 -4.16248 -0.24227 1.05990 1.19370 2.19815 2.76516 3.21626 3.26191 3.28843 3.34103 3.39320 3.65743 3.78076 4.13546 4.32203 4.35619 4.47537 4.66201 4.72225 4.76059 4.82318 5.11989 5.17101 5.24014 5.27272 5.31652 5.47889 5.50041 5.85531 5.96804 6.09101 6.17267 6.27885 6.30321 6.42330 6.59127 6.68248 6.81972 6.92727 7.03999 7.49331 7.56225 7.85212 8.12183 8.26062 8.72728 8.90123 9.48953 10.98172 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022433 B = 0.001863 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.878929 B =15026.028654 C =15780.978880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.626 4.626 3 S 2.605 3.395 4 O -0.945 6.945 5 O -0.956 6.956 6 N -1.056 6.056 7 C 0.106 3.894 8 C -0.108 4.108 9 C -0.138 4.138 10 C 0.175 3.825 11 N -0.693 5.693 12 C 0.696 3.304 13 O -0.578 6.578 14 N -0.731 5.731 15 C 0.138 3.862 16 C 0.012 3.988 17 C -0.521 4.521 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.100 4.100 26 C -0.128 4.128 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.423 0.577 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.406 0.594 36 H 0.396 0.604 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.022 0.978 40 H 0.023 0.977 41 H 0.262 0.738 42 H 0.146 0.854 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.896 8.144 -26.175 28.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.756 4.756 3 S 2.699 3.301 4 O -0.935 6.935 5 O -0.947 6.947 6 N -0.807 5.807 7 C 0.010 3.990 8 C -0.131 4.131 9 C -0.159 4.159 10 C 0.078 3.922 11 N -0.341 5.341 12 C 0.396 3.604 13 O -0.455 6.455 14 N -0.384 5.384 15 C 0.016 3.984 16 C -0.025 4.025 17 C -0.559 4.559 18 H 0.079 0.921 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.121 4.121 26 C -0.150 4.150 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.260 0.740 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.242 0.758 36 H 0.229 0.771 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.164 0.836 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.427 9.010 -25.619 28.434 hybrid contribution 1.153 -1.206 0.377 1.710 sum -7.274 7.804 -25.242 27.404 Atomic orbital electron populations 1.21516 0.90177 1.05388 1.03515 1.30417 1.07414 1.25561 1.12232 1.05379 0.72624 0.77554 0.74527 1.93590 1.84021 1.73599 1.42297 1.93608 1.80807 1.71852 1.48400 1.53265 1.25870 1.69146 1.32449 1.17355 0.97890 0.96195 0.87541 1.20840 0.97102 0.95626 0.99492 1.20740 1.02742 1.01771 0.90690 1.17655 0.94565 0.92508 0.87471 1.42833 1.15768 1.61098 1.14382 1.16075 0.85409 0.78939 0.79962 1.90925 1.13929 1.59547 1.81138 1.45597 1.12988 1.65243 1.14549 1.21685 0.97320 0.99522 0.79897 1.19340 0.93740 0.96102 0.93345 1.21071 0.96236 1.41124 0.97510 0.92113 1.25001 0.94854 0.95486 0.99014 1.69961 1.06396 1.43515 1.33423 0.86444 0.79681 0.78031 0.83335 1.19547 1.20948 1.20920 1.21226 0.95715 0.93966 1.01166 1.21824 1.01667 1.00796 0.90706 0.90870 0.89707 0.90811 0.84828 0.84441 0.74007 0.85209 0.85166 0.75813 0.77098 0.92421 0.92492 0.95922 0.95874 0.92878 0.83615 0.82444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.92 37.16 0.37 -0.49 16 2 C -0.63 -3.83 6.65 37.16 0.25 -3.58 16 3 S 2.61 22.03 5.36 -107.50 -0.58 21.45 16 4 O -0.95 -11.22 15.17 -57.54 -0.87 -12.09 16 5 O -0.96 -10.29 18.08 -57.54 -1.04 -11.33 16 6 N -1.06 -7.59 5.68 32.45 0.18 -7.40 16 7 C 0.11 0.96 6.03 -83.69 -0.50 0.45 16 8 C -0.11 -0.83 9.96 -39.40 -0.39 -1.23 16 9 C -0.14 -1.20 9.96 -39.42 -0.39 -1.59 16 10 C 0.17 2.04 6.29 -83.59 -0.53 1.51 16 11 N -0.69 -8.15 5.36 -14.18 -0.08 -8.23 16 12 C 0.70 11.22 8.30 -86.93 -0.72 10.50 16 13 O -0.58 -11.42 14.02 5.28 0.07 -11.34 16 14 N -0.73 -11.90 5.56 -65.23 -0.36 -12.26 16 15 C 0.14 2.81 5.61 -4.04 -0.02 2.79 16 16 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 17 C -0.52 -14.12 9.11 -34.44 -0.31 -14.43 16 18 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 21 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C -0.10 -1.31 8.65 -39.42 -0.34 -1.65 16 26 C -0.13 -1.48 9.23 -39.40 -0.36 -1.85 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.14 0.86 8.14 -51.92 -0.42 0.44 16 32 H 0.42 2.07 8.92 -34.47 -0.31 1.77 16 33 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.41 3.37 8.84 -40.82 -0.36 3.01 16 36 H 0.40 5.38 8.49 -40.82 -0.35 5.04 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.15 2.22 6.40 -52.48 -0.34 1.89 16 43 H 0.16 1.92 5.63 -52.48 -0.30 1.63 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -35.97 377.35 -10.31 -46.27 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.84 Total: 6.00 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -3.20 Total: -7.90 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.48 Total: -52.79 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -1.84 Total: -34.77 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 22.03 SS G_CDS: -0.58 Total: 21.45 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.97 -10.31 -46.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273257970.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.193 kcal (2) G-P(sol) polarization free energy of solvation -35.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds