Wall clock time and date at job start Tue Mar 31 2020 22:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47031 * 2 1 4 4 N 1.46500 * 109.47560 * 239.99985 * 2 1 3 5 5 C 1.34773 * 119.99704 * 84.99678 * 4 2 1 6 6 O 1.21591 * 120.00455 * 0.02562 * 5 4 2 7 7 N 1.34783 * 119.99740 * 180.02562 * 5 4 2 8 8 C 1.46498 * 119.99790 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.47129 * 180.02562 * 8 7 5 10 10 C 1.50695 * 109.47077 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00463 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00007 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99635 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00354 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46960 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46807 * 120.00230 * 14 12 10 17 17 H 1.48497 * 109.47525 * 240.00687 * 14 12 10 18 18 C 1.50702 * 109.47357 * 120.00005 * 2 1 3 19 19 C 1.38255 * 120.00225 * 80.00087 * 18 2 1 20 20 C 1.38208 * 120.00357 * 179.70539 * 19 18 2 21 21 C 1.38262 * 119.99554 * 359.97438 * 20 19 18 22 22 C 1.38205 * 120.00475 * 0.02562 * 21 20 19 23 23 S 1.76203 * 120.00184 * 179.97438 * 22 21 20 24 24 N 1.65604 * 107.21322 * 90.00111 * 23 22 21 25 25 O 1.42101 * 106.40287 * 203.54039 * 23 22 21 26 26 O 1.42095 * 106.40421 * 336.46181 * 23 22 21 27 27 C 1.38220 * 120.00039 * 259.73038 * 18 2 1 28 28 H 1.09000 * 109.47258 * 299.99417 * 1 2 3 29 29 H 1.09003 * 109.47132 * 60.00239 * 1 2 3 30 30 H 1.09002 * 109.46572 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00155 * 265.00370 * 4 2 1 32 32 H 0.97001 * 119.99986 * 359.97438 * 7 5 4 33 33 H 1.08997 * 109.47273 * 299.99784 * 8 7 5 34 34 H 1.09000 * 109.47361 * 59.99634 * 8 7 5 35 35 H 1.08994 * 109.46585 * 299.99598 * 9 8 7 36 36 H 1.08998 * 109.46681 * 60.00001 * 9 8 7 37 37 H 0.97001 * 120.00006 * 179.97438 * 13 12 10 38 38 H 1.08000 * 119.99329 * 359.72712 * 19 18 2 39 39 H 1.07992 * 120.00457 * 180.02562 * 20 19 18 40 40 H 1.08000 * 119.99741 * 180.02562 * 21 20 19 41 41 H 0.96995 * 120.00249 * 0.02562 * 24 23 22 42 42 H 0.97007 * 119.99629 * 179.97438 * 24 23 22 43 43 H 1.08002 * 119.99604 * 0.27433 * 27 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8583 1.1616 -2.4116 7 7 2.5960 -0.6537 -3.4576 8 6 2.7364 0.0773 -4.7194 9 6 3.2596 -0.8693 -5.8018 10 6 3.4034 -0.1175 -7.0998 11 1 3.1477 0.9307 -7.1481 12 6 3.8625 -0.7675 -8.2258 13 7 4.1744 -2.0438 -8.1669 14 14 4.0402 0.1641 -9.8351 15 1 3.6264 1.5767 -9.6376 16 1 5.4570 0.1211 -10.2781 17 1 3.1789 -0.4644 -10.8687 18 6 2.0324 -0.7104 1.2305 19 6 2.0669 -2.0921 1.2654 20 6 2.5333 -2.7435 2.3915 21 6 2.9660 -2.0134 3.4830 22 6 2.9315 -0.6322 3.4482 23 16 3.4823 0.2982 4.8395 24 7 5.1012 0.5785 4.6318 25 8 2.8418 1.5638 4.7549 26 8 3.3649 -0.5584 5.9671 27 6 2.4640 0.0194 2.3220 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 2.2491 -1.6317 -1.1526 32 1 2.8268 -1.5948 -3.4141 33 1 1.7661 0.4720 -5.0206 34 1 3.4380 0.9008 -4.5862 35 1 4.2299 -1.2642 -5.5008 36 1 2.5575 -1.6923 -5.9348 37 1 4.4970 -2.5013 -8.9591 38 1 1.7296 -2.6623 0.4124 39 1 2.5606 -3.8228 2.4186 40 1 3.3309 -2.5224 4.3628 41 1 5.5548 0.2407 3.8438 42 1 5.5957 1.0813 5.2979 43 1 2.4370 1.0988 2.2948 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273346819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:25 Heat of formation + Delta-G solvation = -89.906719 kcal Electronic energy + Delta-G solvation = -26394.026745 eV Core-core repulsion = 22372.826609 eV Total energy + Delta-G solvation = -4021.200136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.46410 -39.32071 -37.54364 -36.23539 -35.99762 -34.68782 -33.63272 -32.95201 -31.96536 -31.75144 -29.88852 -28.94730 -24.99022 -24.30733 -23.75801 -21.89088 -20.98770 -20.54910 -19.79868 -18.83658 -18.07344 -17.77843 -17.09185 -16.59359 -16.30837 -16.06342 -15.82739 -15.25777 -15.14408 -14.80085 -14.51449 -14.28412 -14.04869 -13.84304 -13.46853 -13.28372 -12.85348 -12.71506 -12.56242 -12.49705 -12.45782 -12.33087 -12.27908 -11.98162 -11.27303 -11.21512 -11.18976 -11.07182 -10.94455 -10.64012 -10.36787 -10.02848 -9.91982 -9.61026 -9.45617 -9.27401 -9.13252 -8.53023 -8.31651 -6.12245 -4.14738 -0.07752 0.27715 0.72209 2.62209 2.81864 3.02465 3.26538 3.28967 3.34358 3.39788 3.50724 3.92239 4.21898 4.36254 4.38932 4.45552 4.57706 4.65064 4.87276 4.96524 5.09959 5.22820 5.25140 5.33619 5.46122 5.52954 5.55738 5.63566 5.72002 5.89210 6.04769 6.24738 6.27019 6.35886 6.50368 6.54740 6.73729 6.93812 7.13551 7.52966 7.59522 7.87043 8.21754 8.35721 8.88467 8.93641 9.50241 10.99448 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022094 B = 0.001825 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.029057 B =15341.359816 C =15390.598796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.201 3.799 3 H 0.101 0.899 4 N -0.750 5.750 5 C 0.700 3.300 6 O -0.594 6.594 7 N -0.738 5.738 8 C 0.140 3.860 9 C 0.013 3.987 10 C -0.520 4.520 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.106 4.106 19 C -0.052 4.052 20 C -0.135 4.135 21 C -0.021 4.021 22 C -0.673 4.673 23 S 2.703 3.297 24 N -1.250 6.250 25 O -0.961 6.961 26 O -0.965 6.965 27 C -0.007 4.007 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.392 0.608 32 H 0.393 0.607 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.261 0.739 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.143 0.857 41 H 0.418 0.582 42 H 0.421 0.579 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 -2.463 27.504 27.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.095 3.905 3 H 0.119 0.881 4 N -0.407 5.407 5 C 0.400 3.600 6 O -0.473 6.473 7 N -0.391 5.391 8 C 0.017 3.983 9 C -0.025 4.025 10 C -0.559 4.559 11 H 0.079 0.921 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.107 4.107 19 C -0.071 4.071 20 C -0.154 4.154 21 C -0.040 4.040 22 C -0.761 4.761 23 S 2.792 3.208 24 N -0.925 5.925 25 O -0.950 6.950 26 O -0.954 6.954 27 C -0.027 4.027 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.226 0.774 32 H 0.226 0.774 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.161 0.839 41 H 0.245 0.755 42 H 0.251 0.749 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.606 -1.226 28.041 28.114 hybrid contribution 0.824 -0.972 -1.674 2.103 sum -0.783 -2.198 26.367 26.470 Atomic orbital electron populations 1.22221 0.94093 1.02426 1.03178 1.19575 0.94189 0.96662 0.80076 0.88080 1.45281 1.73061 1.13445 1.08942 1.16036 0.78553 0.85185 0.80245 1.90899 1.57404 1.14375 1.84611 1.45549 1.69687 1.13923 1.09940 1.21609 1.00463 0.95592 0.80621 1.19329 0.96549 0.94623 0.91974 1.21088 1.44176 0.96668 0.93928 0.92140 1.25004 0.95201 0.94935 0.99236 1.69965 1.44700 1.09167 1.29533 0.86451 0.77728 0.80135 0.83212 1.19550 1.20947 1.20947 1.20180 1.00320 0.94144 0.96095 1.21369 0.93840 0.93972 0.97899 1.21316 0.99997 1.00722 0.93317 1.21000 0.93035 0.91659 0.98303 1.30518 1.19622 1.07064 1.18861 1.01509 0.72467 0.73770 0.73095 1.53034 1.30211 1.73671 1.35604 1.93623 1.74047 1.41266 1.86108 1.93606 1.85532 1.67984 1.48258 1.20848 0.90901 1.00657 0.90269 0.91486 0.90915 0.92393 0.77364 0.77435 0.92712 0.92729 0.96003 0.95986 0.92914 0.84902 0.84514 0.83889 0.75496 0.74899 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.46 37.16 0.35 -1.25 16 2 C 0.20 2.10 2.78 -69.08 -0.19 1.91 16 3 H 0.10 1.21 7.44 -51.93 -0.39 0.83 16 4 N -0.75 -8.65 5.03 -59.81 -0.30 -8.95 16 5 C 0.70 11.53 8.53 -86.92 -0.74 10.79 16 6 O -0.59 -12.15 16.01 5.29 0.08 -12.06 16 7 N -0.74 -12.44 5.56 -65.22 -0.36 -12.80 16 8 C 0.14 2.93 5.61 -4.04 -0.02 2.91 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 14 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C -0.11 -0.90 4.95 -104.62 -0.52 -1.42 16 19 C -0.05 -0.36 9.05 -39.59 -0.36 -0.72 16 20 C -0.13 -0.82 10.05 -39.58 -0.40 -1.22 16 21 C -0.02 -0.14 9.52 -39.58 -0.38 -0.51 16 22 C -0.67 -5.01 5.94 -39.59 -0.24 -5.24 16 23 S 2.70 20.11 6.28 -107.50 -0.68 19.43 16 24 N -1.25 -4.97 9.55 60.35 0.58 -4.40 16 25 O -0.96 -10.44 17.28 -57.17 -0.99 -11.43 16 26 O -0.96 -9.84 17.28 -57.17 -0.99 -10.83 16 27 C -0.01 -0.06 9.14 -39.58 -0.36 -0.42 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.39 3.42 6.89 -40.82 -0.28 3.14 16 32 H 0.39 5.61 8.49 -40.82 -0.35 5.26 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.13 0.69 6.93 -52.49 -0.36 0.33 16 39 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 40 H 0.14 0.73 7.62 -52.49 -0.40 0.33 16 41 H 0.42 0.88 8.92 -34.47 -0.31 0.57 16 42 H 0.42 1.04 8.96 -34.47 -0.31 0.73 16 43 H 0.15 1.13 7.60 -52.49 -0.40 0.73 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -37.77 379.77 -10.34 -48.11 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.72 Total: 4.17 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -3.41 Total: -8.06 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.65 Total: -51.22 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -1.89 Total: -34.32 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 20.11 SS G_CDS: -0.68 Total: 19.43 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.77 -10.34 -48.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273346819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.795 kcal (2) G-P(sol) polarization free energy of solvation -37.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds