Wall clock time and date at job start Tue Mar 31 2020 22:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 N 1.46500 * 109.46837 * 119.99433 * 2 1 3 5 5 C 1.34773 * 120.00431 * 275.00470 * 4 2 1 6 6 O 1.21593 * 119.99894 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00097 * 179.72742 * 5 4 2 8 8 C 1.46504 * 119.99854 * 180.27545 * 7 5 4 9 9 C 1.53004 * 109.46928 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.46843 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99981 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99570 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00351 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99771 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46867 * 90.00067 * 14 12 10 16 16 H 1.48501 * 109.47216 * 209.99924 * 14 12 10 17 17 H 1.48499 * 109.47135 * 330.00265 * 14 12 10 18 18 C 1.50691 * 109.47321 * 239.99926 * 2 1 3 19 19 C 1.38261 * 119.99687 * 279.72890 * 18 2 1 20 20 C 1.38219 * 119.99826 * 179.76980 * 19 18 2 21 21 C 1.38260 * 120.00110 * 0.47861 * 20 19 18 22 22 C 1.38218 * 119.99536 * 359.79258 * 21 20 19 23 23 S 1.76195 * 119.99683 * 179.97438 * 22 21 20 24 24 N 1.65604 * 107.22135 * 269.97976 * 23 22 21 25 25 O 1.42101 * 106.40409 * 23.52345 * 23 22 21 26 26 O 1.42107 * 106.40286 * 156.44148 * 23 22 21 27 27 C 1.38213 * 120.00422 * 100.00081 * 18 2 1 28 28 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 29 29 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 31 31 H 0.97000 * 119.99456 * 95.00032 * 4 2 1 32 32 H 0.97000 * 119.99736 * 0.26819 * 7 5 4 33 33 H 1.08998 * 109.46968 * 299.99782 * 8 7 5 34 34 H 1.08997 * 109.47198 * 59.99605 * 8 7 5 35 35 H 1.09007 * 109.46621 * 299.99773 * 9 8 7 36 36 H 1.08997 * 109.46991 * 59.99522 * 9 8 7 37 37 H 0.96996 * 120.00389 * 180.02562 * 13 12 10 38 38 H 1.07996 * 120.00530 * 359.97438 * 19 18 2 39 39 H 1.07997 * 120.00109 * 180.25651 * 20 19 18 40 40 H 1.07990 * 120.00382 * 179.76893 * 21 20 19 41 41 H 0.96995 * 119.99979 * 0.02562 * 24 23 22 42 42 H 0.96999 * 119.99805 * 180.02562 * 24 23 22 43 43 H 1.08003 * 119.99464 * 0.02562 * 27 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1617 2.4116 7 7 2.5910 -0.6548 3.4590 8 6 2.7250 0.0746 4.7225 9 6 3.2436 -0.8731 5.8060 10 6 3.3809 -0.1229 7.1057 11 1 3.1244 0.9251 7.1540 12 6 3.8339 -0.7745 8.2331 13 7 4.1458 -2.0508 8.1744 14 14 4.0048 0.1556 9.8441 15 1 2.7331 0.0648 10.6054 16 1 5.1047 -0.4395 10.6450 17 1 4.3126 1.5808 9.5627 18 6 2.0324 -0.7104 -1.2304 19 6 2.0721 -2.0920 -1.2631 20 6 2.5284 -2.7437 -2.3933 21 6 2.9545 -2.0138 -3.4876 22 6 2.9200 -0.6325 -3.4527 23 16 3.4636 0.2977 -4.8469 24 7 5.0834 0.5788 -4.6474 25 8 3.3408 -0.5593 -5.9737 26 8 2.8230 1.5632 -4.7595 27 6 2.4588 0.0193 -2.3240 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8898 31 1 2.2490 -1.6317 1.1527 32 1 2.8216 -1.5960 3.4155 33 1 3.4269 0.8985 4.5936 34 1 1.7531 0.4685 5.0195 35 1 2.5412 -1.6967 5.9346 36 1 4.2154 -1.2673 5.5090 37 1 4.4642 -2.5093 8.9677 38 1 1.7435 -2.6622 -0.4067 39 1 2.5555 -3.8230 -2.4205 40 1 3.3145 -2.5229 -4.3693 41 1 5.5412 0.2407 -3.8620 42 1 5.5743 1.0815 -5.3161 43 1 2.4323 1.0986 -2.2966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273346829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:28 Heat of formation + Delta-G solvation = -89.806633 kcal Electronic energy + Delta-G solvation = -26392.079713 eV Core-core repulsion = 22370.883918 eV Total energy + Delta-G solvation = -4021.195796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.46454 -39.32030 -37.54252 -36.23431 -35.99752 -34.68724 -33.63398 -32.95134 -31.96675 -31.74944 -29.88892 -28.94763 -24.98957 -24.30733 -23.75929 -21.88973 -20.98651 -20.54916 -19.79876 -18.83732 -18.07411 -17.77884 -17.09205 -16.59274 -16.30630 -16.06379 -15.82776 -15.25685 -15.14413 -14.80038 -14.51793 -14.28343 -14.05106 -13.84179 -13.46760 -13.28341 -12.85363 -12.71605 -12.56231 -12.49640 -12.45722 -12.32714 -12.27643 -11.98115 -11.27351 -11.22257 -11.18932 -11.05508 -10.94534 -10.65545 -10.35791 -10.03041 -9.92119 -9.60731 -9.45670 -9.28892 -9.13260 -8.52579 -8.31550 -6.11950 -4.14580 -0.07827 0.27622 0.72222 2.62203 2.81888 3.02248 3.27847 3.28885 3.34127 3.38672 3.50770 3.92274 4.21896 4.36269 4.38898 4.45473 4.57660 4.65075 4.87291 4.96489 5.09976 5.22827 5.25318 5.33573 5.46102 5.52884 5.55704 5.63603 5.71991 5.89169 6.04852 6.24769 6.26989 6.35914 6.50395 6.54679 6.73750 6.93807 7.13538 7.52851 7.59597 7.87088 8.21827 8.35750 8.88402 8.93586 9.50339 10.99684 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022278 B = 0.001821 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.528475 B =15370.998832 C =15412.064832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.201 3.799 3 H 0.101 0.899 4 N -0.750 5.750 5 C 0.700 3.300 6 O -0.594 6.594 7 N -0.738 5.738 8 C 0.140 3.860 9 C 0.013 3.987 10 C -0.521 4.521 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.106 4.106 19 C -0.052 4.052 20 C -0.135 4.135 21 C -0.021 4.021 22 C -0.673 4.673 23 S 2.703 3.297 24 N -1.250 6.250 25 O -0.965 6.965 26 O -0.961 6.961 27 C -0.007 4.007 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.392 0.608 32 H 0.393 0.607 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.262 0.738 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.143 0.857 41 H 0.418 0.582 42 H 0.421 0.579 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.604 -2.458 -27.535 27.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.095 3.905 3 H 0.119 0.881 4 N -0.407 5.407 5 C 0.400 3.600 6 O -0.473 6.473 7 N -0.391 5.391 8 C 0.017 3.983 9 C -0.024 4.024 10 C -0.559 4.559 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.107 4.107 19 C -0.071 4.071 20 C -0.153 4.153 21 C -0.040 4.040 22 C -0.761 4.761 23 S 2.791 3.209 24 N -0.925 5.925 25 O -0.954 6.954 26 O -0.950 6.950 27 C -0.027 4.027 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.226 0.774 32 H 0.226 0.774 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.161 0.839 41 H 0.245 0.755 42 H 0.251 0.749 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.527 -1.224 -28.067 28.135 hybrid contribution 0.811 -0.962 1.672 2.093 sum -0.715 -2.186 -26.394 26.494 Atomic orbital electron populations 1.22220 0.94082 1.02428 1.03180 1.19575 0.94189 0.96667 0.80072 0.88081 1.45282 1.73059 1.13437 1.08959 1.16035 0.78545 0.85191 0.80248 1.90900 1.57361 1.14392 1.84641 1.45549 1.69873 1.13917 1.09757 1.21609 1.00483 0.95623 0.80567 1.19325 0.96567 0.94603 0.91943 1.21048 1.44441 0.96660 0.93790 0.92196 1.24999 0.95172 0.94936 0.99230 1.69950 1.44734 1.09139 1.29543 0.86503 0.77770 0.80065 0.83161 1.20559 1.21188 1.19705 1.20177 1.00315 0.94146 0.96094 1.21372 0.93821 0.93969 0.97919 1.21319 1.00051 1.00721 0.93258 1.21001 0.92995 0.91657 0.98346 1.30519 1.19643 1.07060 1.18844 1.01515 0.72465 0.73773 0.73101 1.53033 1.30150 1.73656 1.35678 1.93607 1.85486 1.67969 1.48315 1.93624 1.74031 1.41276 1.86107 1.20845 0.90916 1.00656 0.90259 0.91487 0.92390 0.90913 0.77365 0.77436 0.92726 0.92716 0.95997 0.96004 0.92856 0.84904 0.84514 0.83888 0.75499 0.74900 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.46 37.16 0.35 -1.25 16 2 C 0.20 2.10 2.78 -69.08 -0.19 1.91 16 3 H 0.10 1.21 7.44 -51.93 -0.39 0.83 16 4 N -0.75 -8.66 5.03 -59.81 -0.30 -8.96 16 5 C 0.70 11.53 8.53 -86.92 -0.74 10.79 16 6 O -0.59 -12.15 16.01 5.28 0.08 -12.06 16 7 N -0.74 -12.44 5.56 -65.22 -0.36 -12.80 16 8 C 0.14 2.93 5.61 -4.04 -0.02 2.91 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 11 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 14 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 C -0.11 -0.90 4.96 -104.63 -0.52 -1.42 16 19 C -0.05 -0.36 9.06 -39.58 -0.36 -0.72 16 20 C -0.13 -0.82 10.05 -39.58 -0.40 -1.22 16 21 C -0.02 -0.14 9.52 -39.58 -0.38 -0.51 16 22 C -0.67 -5.00 5.94 -39.58 -0.24 -5.24 16 23 S 2.70 20.09 6.28 -107.50 -0.68 19.42 16 24 N -1.25 -4.96 9.55 60.35 0.58 -4.39 16 25 O -0.96 -9.84 17.28 -57.17 -0.99 -10.82 16 26 O -0.96 -10.44 17.29 -57.17 -0.99 -11.43 16 27 C -0.01 -0.06 9.14 -39.58 -0.36 -0.42 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.39 3.42 6.87 -40.82 -0.28 3.14 16 32 H 0.39 5.61 8.49 -40.82 -0.35 5.26 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.13 0.69 6.90 -52.49 -0.36 0.33 16 39 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 40 H 0.14 0.73 7.62 -52.49 -0.40 0.33 16 41 H 0.42 0.87 8.92 -34.47 -0.31 0.56 16 42 H 0.42 1.04 8.96 -34.47 -0.31 0.73 16 43 H 0.15 1.13 7.60 -52.48 -0.40 0.73 16 LS Contribution 379.74 15.07 5.72 5.72 Total: -1.00 -37.75 379.74 -10.34 -48.09 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.71 Total: 4.20 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -3.41 Total: -8.05 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.65 Total: -51.22 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.89 Total: -34.31 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 20.09 SS G_CDS: -0.68 Total: 19.42 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.75 -10.34 -48.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273346829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.719 kcal (2) G-P(sol) polarization free energy of solvation -37.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds