Wall clock time and date at job start Tue Mar 31 2020 23:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45199 * 109.46801 * 2 1 4 4 C 1.34755 * 117.00045 * 179.97438 * 3 2 1 5 5 O 1.21504 * 120.00191 * 0.02562 * 4 3 2 6 6 C 1.47393 * 120.00388 * 180.02562 * 4 3 2 7 7 C 1.40741 * 126.43933 * 0.18150 * 6 4 3 8 8 N 1.30622 * 108.48797 * 180.26899 * 7 6 4 9 9 N 1.39926 * 109.24414 * 359.74044 * 8 7 6 10 10 C 1.46507 * 125.89368 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47204 * 269.95896 * 10 9 8 12 12 C 1.38304 * 119.92541 * 269.72655 * 11 10 9 13 13 C 1.38100 * 120.06675 * 179.72527 * 12 11 10 14 14 C 1.38880 * 119.92674 * 0.56764 * 13 12 11 15 15 O 1.35758 * 120.06711 * 179.68204 * 14 13 12 16 16 C 1.34830 * 116.99742 * 174.48170 * 15 14 13 17 17 H 1.07999 * 120.00461 * 5.06250 * 16 15 14 18 18 C 1.38654 * 120.00040 * 185.05426 * 16 15 14 19 19 N 1.31554 * 120.00245 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99605 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47197 * 89.99721 * 20 18 16 22 22 H 1.48504 * 109.46834 * 209.99636 * 20 18 16 23 23 H 1.48493 * 109.47370 * 329.99424 * 20 18 16 24 24 C 1.38878 * 119.86683 * 359.70342 * 14 13 12 25 25 C 1.38103 * 119.92579 * 0.02562 * 24 14 13 26 26 C 1.35884 * 108.21725 * 359.97438 * 9 8 7 27 27 C 1.43207 * 126.53042 * 179.97438 * 26 9 8 28 28 N 5.94249 * 164.26442 * 0.02562 * 2 1 3 29 29 H 1.08997 * 109.46595 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47118 * 299.99920 * 1 2 3 31 31 H 1.09001 * 109.46673 * 60.00219 * 1 2 3 32 32 H 1.08999 * 109.47354 * 240.00727 * 2 1 3 33 33 H 1.08997 * 109.47536 * 119.99996 * 2 1 3 34 34 H 1.08005 * 125.75560 * 0.04311 * 7 6 4 35 35 H 1.09007 * 109.46810 * 29.95649 * 10 9 8 36 36 H 1.08995 * 109.47122 * 149.95197 * 10 9 8 37 37 H 1.08000 * 119.96604 * 359.97438 * 12 11 10 38 38 H 1.07996 * 120.04129 * 180.27265 * 13 12 11 39 39 H 0.97006 * 119.99540 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.03755 * 179.97438 * 24 14 13 41 41 H 1.08005 * 119.96065 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5456 0.0005 5 8 4.0901 0.5821 0.0005 6 6 3.9132 2.9076 0.0011 7 6 3.1865 4.1129 0.0048 8 7 4.0335 5.1073 -0.0017 9 7 5.3382 4.6018 -0.0038 10 6 6.5679 5.3982 -0.0102 11 6 6.9859 5.6655 -1.4332 12 6 7.8333 4.7848 -2.0804 13 6 8.2137 5.0239 -3.3863 14 6 7.7537 6.1564 -4.0456 15 8 8.1310 6.3976 -5.3272 16 6 7.5595 7.4507 -5.9455 17 1 6.8996 8.1063 -5.3968 18 6 7.8192 7.6921 -7.2860 19 7 7.2620 8.7199 -7.8892 20 14 8.9602 6.5579 -8.2353 21 1 8.1706 5.4566 -8.8425 22 1 9.6431 7.3266 -9.3068 23 1 9.9739 5.9891 -7.3113 24 6 6.9073 7.0418 -3.3911 25 6 6.5261 6.7941 -2.0870 26 6 5.2680 3.2448 0.0022 27 6 6.3732 2.3340 0.0020 28 7 7.2498 1.6116 0.0007 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.1100 4.2008 0.0084 35 1 6.3903 6.3448 0.5003 36 1 7.3579 4.8508 0.5039 37 1 8.1948 3.9070 -1.5654 38 1 8.8720 4.3336 -3.8927 39 1 7.4435 8.8885 -8.8271 40 1 6.5482 7.9236 -3.9010 41 1 5.8676 7.4820 -1.5776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273456723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:03 Heat of formation + Delta-G solvation = 26.679797 kcal Electronic energy + Delta-G solvation = -27762.300829 eV Core-core repulsion = 23610.712312 eV Total energy + Delta-G solvation = -4151.588516 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.83137 -40.21130 -39.38733 -37.19329 -36.94955 -36.57541 -33.97063 -32.53528 -32.06790 -31.19065 -30.48832 -29.97117 -26.79541 -25.32064 -24.44749 -23.22683 -22.48078 -22.26026 -21.37185 -20.67315 -18.80600 -18.10112 -17.78556 -17.47069 -16.82672 -16.53385 -16.07000 -15.57060 -15.10718 -14.74181 -14.54958 -14.24032 -14.18429 -14.00760 -13.92430 -13.73955 -13.48593 -13.36671 -13.12401 -12.99474 -12.90240 -12.80677 -12.37310 -12.23818 -12.12895 -11.92740 -11.58892 -11.41371 -11.37890 -10.93049 -10.86785 -10.78767 -10.62678 -10.29495 -9.83485 -9.56694 -9.19337 -9.02944 -8.49338 -7.62656 -6.57375 -4.24041 0.36920 1.35852 1.72911 1.93009 2.08324 2.26633 2.60895 2.64363 3.12917 3.15156 3.17340 3.30688 3.36490 4.07498 4.11154 4.28674 4.48052 4.61997 4.63365 4.66745 4.67909 4.86141 4.94051 4.96269 4.97535 5.09618 5.16759 5.43199 5.44257 5.46249 5.48947 5.65541 5.92073 5.94020 6.08965 6.18838 6.24125 6.31357 6.55811 6.77374 6.92961 7.03027 7.07165 7.11955 7.38292 7.57965 7.62161 7.85627 8.76496 9.35520 10.49221 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013321 B = 0.002480 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.425186 B =11285.599588 C =11766.111699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.064 3.936 3 O -0.350 6.350 4 C 0.543 3.457 5 O -0.511 6.511 6 C -0.227 4.227 7 C 0.099 3.901 8 N -0.255 5.255 9 N -0.309 5.309 10 C 0.177 3.823 11 C -0.226 4.226 12 C -0.053 4.053 13 C -0.193 4.193 14 C 0.173 3.827 15 O -0.207 6.207 16 C -0.392 4.392 17 H 0.110 0.890 18 C 0.066 3.934 19 N -0.870 5.870 20 Si 0.905 3.095 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.259 1.259 24 C -0.225 4.225 25 C -0.035 4.035 26 C 0.223 3.777 27 C 0.268 3.732 28 N -0.351 5.351 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.207 0.793 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.282 0.718 40 H 0.137 0.863 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.598 -10.484 17.846 23.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.267 6.267 4 C 0.387 3.613 5 O -0.400 6.400 6 C -0.244 4.244 7 C -0.086 4.086 8 N -0.076 5.076 9 N -0.089 5.089 10 C 0.059 3.941 11 C -0.229 4.229 12 C -0.072 4.072 13 C -0.213 4.213 14 C 0.119 3.881 15 O -0.111 6.111 16 C -0.468 4.468 17 H 0.127 0.873 18 C -0.138 4.138 19 N -0.507 5.507 20 Si 0.730 3.270 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.183 1.183 24 C -0.244 4.244 25 C -0.054 4.054 26 C 0.087 3.913 27 C -0.050 4.050 28 N -0.029 5.029 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.223 0.777 35 H 0.133 0.867 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.138 0.862 39 H 0.092 0.908 40 H 0.155 0.845 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.678 -10.457 17.462 22.126 hybrid contribution -0.067 -1.010 -0.670 1.214 sum -8.745 -11.467 16.792 22.134 Atomic orbital electron populations 1.21812 0.92437 1.03020 1.03697 1.23051 0.95341 0.79784 1.02794 1.86515 1.23193 1.32511 1.84464 1.19846 0.80709 0.88048 0.72646 1.90883 1.60379 1.42104 1.46589 1.19080 0.90103 0.92509 1.22691 1.24091 1.00726 0.87594 0.96199 1.77434 0.85944 1.21960 1.22254 1.49739 1.07418 1.01675 1.50092 1.20865 0.80226 0.96435 0.96561 1.19168 1.07831 1.00294 0.95559 1.20475 0.95940 0.97115 0.93700 1.20169 1.07409 0.98433 0.95251 1.19190 0.91500 0.92468 0.84959 1.83578 1.58858 1.47188 1.21432 1.20816 1.28184 1.03261 0.94495 0.87315 1.24502 0.97174 0.96646 0.95523 1.69639 1.41633 1.26921 1.12468 0.86180 0.81070 0.80278 0.79431 1.19685 1.20532 1.18284 1.21282 1.04501 1.02907 0.95704 1.20667 0.95899 0.95087 0.93744 1.16177 0.89242 0.83657 1.02261 1.23838 0.92061 0.93595 0.95506 1.81260 1.08934 1.06971 1.05692 0.90230 0.91379 0.91257 0.91055 0.91149 0.77672 0.86742 0.88260 0.87352 0.86175 0.90752 0.84493 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.29 37.16 0.38 -0.39 16 2 C 0.06 0.50 6.20 37.16 0.23 0.73 16 3 O -0.35 -3.48 10.07 -40.64 -0.41 -3.88 16 4 C 0.54 6.64 7.96 34.46 0.27 6.91 16 5 O -0.51 -7.64 15.59 -19.27 -0.30 -7.94 16 6 C -0.23 -2.65 6.16 -104.71 -0.64 -3.30 16 7 C 0.10 0.97 11.82 -17.12 -0.20 0.77 16 8 N -0.26 -2.98 12.49 30.77 0.38 -2.60 16 9 N -0.31 -3.69 3.61 -59.38 -0.21 -3.90 16 10 C 0.18 1.93 6.35 -5.19 -0.03 1.90 16 11 C -0.23 -3.32 5.47 -104.58 -0.57 -3.89 16 12 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 13 C -0.19 -3.67 9.99 -39.39 -0.39 -4.06 16 14 C 0.17 3.78 6.65 -39.11 -0.26 3.52 16 15 O -0.21 -5.25 8.59 0.02 0.00 -5.25 16 16 C -0.39 -10.61 9.95 30.89 0.31 -10.30 16 17 H 0.11 2.98 5.44 -52.49 -0.29 2.70 16 18 C 0.07 1.80 5.49 -17.52 -0.10 1.70 16 19 N -0.87 -24.26 13.96 55.48 0.77 -23.49 16 20 Si 0.91 21.01 28.62 -169.99 -4.86 16.15 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 24 C -0.22 -4.50 9.17 -39.39 -0.36 -4.86 16 25 C -0.04 -0.57 9.69 -39.61 -0.38 -0.95 16 26 C 0.22 2.80 6.83 -83.63 -0.57 2.23 16 27 C 0.27 3.69 13.82 -22.47 -0.31 3.38 16 28 N -0.35 -5.26 18.54 41.84 0.78 -4.49 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.21 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.11 1.01 8.08 -51.92 -0.42 0.59 16 36 H 0.10 0.90 7.73 -51.93 -0.40 0.50 16 37 H 0.11 1.55 7.93 -52.49 -0.42 1.13 16 38 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.14 2.89 5.64 -52.48 -0.30 2.59 16 41 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 376.31 15.07 5.67 5.67 Total: -1.00 -31.17 376.31 -5.54 -36.71 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.34 Total: 0.87 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -3.02 Total: -7.86 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 1.72 Total: -34.47 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.71 Total: -17.07 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.86 Total: 16.15 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.17 -5.54 -36.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273456723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.387 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds