Wall clock time and date at job start Tue Mar 31 2020 23:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47251 * 2 1 4 4 C 1.46499 * 119.99907 * 277.46953 * 3 2 1 5 5 C 1.50704 * 109.46852 * 269.99288 * 4 3 2 6 6 H 1.08004 * 120.00152 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99974 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99979 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99871 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47433 * 60.00446 * 9 7 5 11 11 H 1.48504 * 109.46892 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47159 * 300.00088 * 9 7 5 13 13 C 1.34774 * 120.00210 * 97.46490 * 3 2 1 14 14 O 1.21549 * 120.00254 * 185.68545 * 13 3 2 15 15 C 1.47843 * 119.99711 * 5.67483 * 13 3 2 16 16 C 1.40023 * 120.56526 * 315.00791 * 15 13 3 17 17 C 1.38350 * 118.29351 * 179.70017 * 16 15 13 18 18 C 1.38355 * 119.29918 * 0.27663 * 17 16 15 19 19 S 1.76205 * 119.45715 * 179.97438 * 18 17 16 20 20 O 1.42102 * 106.40227 * 203.53610 * 19 18 17 21 21 O 1.42097 * 106.40270 * 336.46053 * 19 18 17 22 22 N 1.65602 * 107.21667 * 90.00264 * 19 18 17 23 23 C 1.46496 * 120.00535 * 89.99848 * 22 19 18 24 24 C 1.46510 * 119.99450 * 269.99707 * 22 19 18 25 25 N 1.31929 * 121.08185 * 359.97438 * 18 17 16 26 26 C 1.31686 * 121.88000 * 0.02562 * 25 18 17 27 27 H 1.08997 * 109.47208 * 309.01539 * 1 2 3 28 28 H 1.09000 * 109.47083 * 69.02051 * 1 2 3 29 29 H 1.09004 * 109.46818 * 189.01553 * 1 2 3 30 30 H 1.09004 * 109.47023 * 240.00067 * 2 1 3 31 31 H 1.08999 * 109.47705 * 120.00157 * 2 1 3 32 32 H 1.08995 * 109.47240 * 29.99117 * 4 3 2 33 33 H 1.08996 * 109.47353 * 149.99720 * 4 3 2 34 34 H 0.97002 * 120.00335 * 179.97438 * 8 7 5 35 35 H 1.08006 * 120.84997 * 359.97111 * 16 15 13 36 36 H 1.07993 * 120.35124 * 180.24868 * 17 16 15 37 37 H 1.09001 * 109.47332 * 89.99435 * 23 22 19 38 38 H 1.08996 * 109.47537 * 209.99869 * 23 22 19 39 39 H 1.09001 * 109.46780 * 330.00295 * 23 22 19 40 40 H 1.09001 * 109.46736 * 90.00283 * 24 22 19 41 41 H 1.09003 * 109.46669 * 209.99772 * 24 22 19 42 42 H 1.08995 * 109.47412 * 330.00091 * 24 22 19 43 43 H 1.07999 * 119.71693 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1070 2.1268 -1.2580 5 6 3.4657 1.9129 -1.8739 6 1 4.1905 1.2841 -1.3781 7 6 3.7831 2.5191 -3.0709 8 7 2.9004 3.2843 -3.6749 9 14 5.4670 2.2534 -3.8347 10 1 5.6669 0.8063 -4.1014 11 1 5.5570 3.0092 -5.1098 12 1 6.5160 2.7340 -2.8998 13 6 2.3859 1.9660 1.1573 14 8 2.6925 3.1421 1.1734 15 6 2.4161 1.1771 2.4072 16 6 1.3600 0.3169 2.7319 17 6 1.4399 -0.4038 3.9102 18 6 2.5472 -0.2487 4.7250 19 16 2.6529 -1.1640 6.2270 20 8 3.5325 -0.4404 7.0768 21 8 1.3196 -1.4954 6.5896 22 7 3.4117 -2.5938 5.8774 23 6 4.8705 -2.6908 5.9700 24 6 2.6240 -3.7618 5.4754 25 7 3.5253 0.5733 4.3959 26 6 3.4954 1.2805 3.2855 27 1 -0.3633 0.6469 0.7984 28 1 -0.3633 0.3679 -0.9595 29 1 -0.3633 -1.0150 0.1610 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.3373 1.7741 -1.9444 33 1 1.9601 3.1889 -1.0620 34 1 3.1239 3.7111 -4.5168 35 1 0.5071 0.2153 2.0772 36 1 0.6461 -1.0799 4.1912 37 1 5.1510 -2.9986 6.9773 38 1 5.2322 -3.4261 5.2514 39 1 5.3138 -1.7195 5.7503 40 1 2.5100 -3.7676 4.3913 41 1 3.1351 -4.6711 5.7918 42 1 1.6409 -3.7158 5.9438 43 1 4.3152 1.9432 3.0506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274775351.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:04 Heat of formation + Delta-G solvation = -49.822710 kcal Electronic energy + Delta-G solvation = -27943.617204 eV Core-core repulsion = 23924.155242 eV Total energy + Delta-G solvation = -4019.461962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.78723 -38.76607 -37.57631 -36.52828 -36.11060 -35.75171 -33.37557 -32.48883 -31.78736 -30.40230 -28.47698 -27.53649 -25.21479 -24.87744 -24.05993 -23.26880 -22.60294 -19.67785 -19.27162 -18.48077 -17.69604 -17.23253 -16.95905 -16.53555 -16.16991 -15.81342 -15.27122 -14.92430 -14.75983 -14.63326 -14.48244 -14.16598 -14.08628 -13.79317 -13.38593 -12.98820 -12.96596 -12.69291 -12.63244 -12.53432 -12.34676 -12.21340 -12.01020 -11.89251 -11.86111 -11.58137 -11.33175 -11.12886 -11.01063 -10.70272 -10.27378 -10.13195 -10.02669 -9.80445 -9.68723 -9.53774 -9.20230 -8.54653 -7.93379 -6.16295 -4.22353 -0.09571 0.23352 0.90626 2.47858 2.94131 3.24170 3.26467 3.29675 3.33531 3.46427 3.64097 3.77534 4.33283 4.37010 4.39583 4.53480 4.60763 4.70029 4.84934 4.98532 5.00490 5.09238 5.18409 5.23651 5.25301 5.35025 5.37164 5.44453 5.47317 5.54228 5.57347 5.74067 5.77819 6.03710 6.07730 6.19795 6.29308 6.84091 7.24122 7.31223 7.35073 7.78386 8.07155 8.10047 8.62094 8.83278 9.43285 10.91824 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017675 B = 0.002866 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.737819 B = 9768.093459 C =10111.259208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.093 3.907 3 N -0.582 5.582 4 C 0.246 3.754 5 C -0.535 4.535 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.892 5.892 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.544 3.456 14 O -0.522 6.522 15 C -0.105 4.105 16 C -0.079 4.079 17 C -0.092 4.092 18 C -0.446 4.446 19 S 2.704 3.296 20 O -0.931 6.931 21 O -0.948 6.948 22 N -1.001 6.001 23 C 0.091 3.909 24 C 0.079 3.921 25 N -0.393 5.393 26 C 0.128 3.872 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.266 0.734 35 H 0.164 0.836 36 H 0.156 0.844 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.141 -16.693 15.930 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.031 4.031 3 N -0.313 5.313 4 C 0.127 3.873 5 C -0.573 4.573 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.530 5.530 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.329 3.671 14 O -0.399 6.399 15 C -0.111 4.111 16 C -0.106 4.106 17 C -0.113 4.113 18 C -0.665 4.665 19 S 2.790 3.210 20 O -0.921 6.921 21 O -0.938 6.938 22 N -0.842 5.842 23 C -0.054 4.054 24 C -0.066 4.066 25 N -0.102 5.102 26 C -0.034 4.034 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.181 0.819 36 H 0.174 0.826 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.593 -15.630 17.078 23.296 hybrid contribution 0.263 -0.068 -2.081 2.099 sum -2.330 -15.698 14.997 21.835 Atomic orbital electron populations 1.22366 0.96352 1.01671 1.03100 1.21722 0.93902 0.84245 1.03210 1.48251 1.61220 1.13417 1.08419 1.19384 0.97346 0.92856 0.77694 1.21358 0.99364 1.30532 1.06062 0.92421 1.24926 0.97458 0.94717 0.96792 1.69912 1.34638 1.30983 1.17510 0.86532 0.84057 0.78215 0.78481 1.20201 1.21059 1.20076 1.17951 0.79377 0.86964 0.82839 1.90813 1.48399 1.15211 1.85463 1.21732 0.96032 0.96006 0.97352 1.22520 0.98909 0.92783 0.96358 1.21893 0.97340 0.98675 0.93407 1.33757 0.98505 1.11559 1.22662 1.02120 0.73328 0.72284 0.73307 1.93601 1.65732 1.70929 1.61828 1.93599 1.36263 1.83360 1.80564 1.57302 1.16020 1.25757 1.85076 1.21583 0.77545 1.03885 1.02418 1.21697 0.96391 0.88048 1.00482 1.67830 1.24243 1.02462 1.15676 1.23239 0.97041 0.95257 0.87871 0.92445 0.91137 0.91541 0.89514 0.91229 0.94492 0.93422 0.92472 0.81919 0.82597 0.91922 0.90739 0.90165 0.92415 0.90145 0.89615 0.80539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 9.13 37.16 0.34 -1.73 16 2 C 0.09 1.36 5.60 -4.04 -0.02 1.34 16 3 N -0.58 -11.54 2.46 -176.18 -0.43 -11.97 16 4 C 0.25 6.07 5.22 -5.19 -0.03 6.04 16 5 C -0.53 -14.48 9.39 -34.44 -0.32 -14.80 16 6 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 9 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.54 10.96 7.30 -12.33 -0.09 10.87 16 14 O -0.52 -12.71 16.55 5.32 0.09 -12.62 16 15 C -0.11 -1.68 5.10 -104.82 -0.53 -2.22 16 16 C -0.08 -0.99 7.54 -38.87 -0.29 -1.29 16 17 C -0.09 -1.03 9.54 -39.50 -0.38 -1.40 16 18 C -0.45 -5.70 6.86 -17.47 -0.12 -5.82 16 19 S 2.70 30.97 5.71 -107.50 -0.61 30.35 16 20 O -0.93 -13.48 16.92 -57.17 -0.97 -14.45 16 21 O -0.95 -11.64 15.85 -57.17 -0.91 -12.55 16 22 N -1.00 -8.28 3.58 -129.20 -0.46 -8.74 16 23 C 0.09 0.64 10.29 59.84 0.62 1.26 16 24 C 0.08 0.44 10.66 59.85 0.64 1.08 16 25 N -0.39 -5.81 10.09 -12.11 -0.12 -5.94 16 26 C 0.13 1.99 10.86 -17.13 -0.19 1.80 16 27 H 0.06 0.65 6.36 -51.93 -0.33 0.32 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.32 8.13 -51.93 -0.42 0.89 16 31 H 0.07 0.87 5.08 -51.93 -0.26 0.61 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.50 16 33 H 0.05 1.34 7.35 -51.93 -0.38 0.96 16 34 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.16 1.73 3.75 -52.48 -0.20 1.53 16 36 H 0.16 1.24 7.59 -52.49 -0.40 0.84 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 39 H 0.08 0.64 7.79 -51.93 -0.40 0.24 16 40 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 42 H 0.09 0.48 7.02 -51.93 -0.36 0.11 16 43 H 0.18 2.64 8.06 -52.49 -0.42 2.22 16 LS Contribution 372.29 15.07 5.61 5.61 Total: -1.00 -35.71 372.29 -8.25 -43.96 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.68 Total: -1.69 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -0.48 Total: -3.20 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.28 Total: -51.52 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -1.79 Total: -39.61 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 30.97 SS G_CDS: -0.61 Total: 30.35 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.71 -8.25 -43.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274775351.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.861 kcal (2) G-P(sol) polarization free energy of solvation -35.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds