Wall clock time and date at job start Tue Mar 31 2020 23:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.47058 * 2 1 4 4 C 1.39623 * 119.99964 * 179.97438 * 3 2 1 5 5 C 1.38757 * 120.12255 * 0.02656 * 4 3 2 6 6 C 1.38176 * 120.00964 * 179.70270 * 5 4 3 7 7 C 1.38464 * 120.24668 * 0.54545 * 6 5 4 8 8 S 1.76205 * 119.87538 * 179.72440 * 7 6 5 9 9 O 1.42099 * 106.40454 * 156.19016 * 8 7 6 10 10 O 1.42098 * 106.40144 * 23.26759 * 8 7 6 11 11 N 1.65603 * 107.21655 * 269.72770 * 8 7 6 12 12 C 1.46507 * 119.99798 * 90.00014 * 11 8 7 13 13 C 1.46495 * 120.00185 * 269.99639 * 11 8 7 14 14 C 1.38082 * 120.24771 * 359.45457 * 7 6 5 15 15 C 1.38928 * 119.98834 * 0.26611 * 14 7 6 16 16 N 1.39482 * 120.12375 * 179.97438 * 15 14 7 17 17 C 1.34773 * 120.00001 * 325.24368 * 16 15 14 18 18 O 1.21799 * 119.99967 * 4.52113 * 17 16 15 19 19 C 1.41716 * 120.00075 * 184.52022 * 17 16 15 20 20 H 1.07999 * 120.00066 * 359.97438 * 19 17 16 21 21 C 1.40138 * 120.00090 * 180.02562 * 19 17 16 22 22 N 1.30624 * 120.00186 * 359.97438 * 21 19 17 23 23 Si 1.86806 * 120.00134 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47099 * 59.99322 * 23 21 19 25 25 H 1.48495 * 109.47180 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46744 * 299.99526 * 23 21 19 27 27 H 1.08998 * 109.47175 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47140 * 300.00021 * 1 2 3 29 29 H 1.09004 * 109.47242 * 60.00272 * 1 2 3 30 30 H 1.09002 * 109.47508 * 240.00304 * 2 1 3 31 31 H 1.08996 * 109.47160 * 120.00032 * 2 1 3 32 32 H 0.97005 * 119.99841 * 359.97438 * 3 2 1 33 33 H 1.08004 * 120.00091 * 359.97438 * 5 4 3 34 34 H 1.08000 * 119.87932 * 180.27260 * 6 5 4 35 35 H 1.09000 * 109.46775 * 270.00021 * 12 11 8 36 36 H 1.08997 * 109.46582 * 149.99553 * 12 11 8 37 37 H 1.08996 * 109.47019 * 29.99792 * 12 11 8 38 38 H 1.08995 * 109.47216 * 179.97438 * 13 11 8 39 39 H 1.09000 * 109.47195 * 300.00608 * 13 11 8 40 40 H 1.09006 * 109.46972 * 60.00397 * 13 11 8 41 41 H 1.07997 * 120.00879 * 180.25318 * 14 7 6 42 42 H 0.96994 * 119.99571 * 145.25542 * 16 15 14 43 43 H 0.97003 * 120.00348 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3910 1.6364 0.0005 5 6 4.2950 0.5837 0.0005 6 6 5.6530 0.8388 -0.0052 7 6 6.1176 2.1432 0.0006 8 16 7.8514 2.4573 0.0006 9 8 8.0235 3.7586 -0.5438 10 8 8.4690 1.2991 -0.5438 11 7 8.3337 2.5447 1.5824 12 6 8.7732 1.3349 2.2821 13 6 8.3209 3.8317 2.2821 14 6 5.2273 3.1987 0.0006 15 6 3.8598 2.9537 0.0005 16 7 2.9580 4.0178 0.0011 17 6 3.2539 5.1515 0.6671 18 8 4.3421 5.2789 1.1992 19 6 2.2990 6.1954 0.7482 20 1 1.3342 6.0827 0.2760 21 6 2.6068 7.3745 1.4403 22 7 3.7738 7.5111 2.0110 23 14 1.3483 8.7509 1.5466 24 1 0.1225 8.2500 2.2187 25 1 1.9143 9.8799 2.3276 26 1 1.0074 9.2166 0.1784 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3879 2.1186 -0.0004 33 1 3.9372 -0.4354 0.0005 34 1 6.3547 0.0179 -0.0096 35 1 7.9163 0.8599 2.7598 36 1 9.5103 1.6009 3.0397 37 1 9.2200 0.6438 1.5673 38 1 8.6681 3.6922 3.3058 39 1 8.9788 4.5318 1.7671 40 1 7.3058 4.2287 2.2940 41 1 5.5940 4.2145 0.0009 42 1 2.1179 3.9417 -0.4777 43 1 3.9868 8.3271 2.4903 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274923950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:47 Heat of formation + Delta-G solvation = -73.298643 kcal Electronic energy + Delta-G solvation = -28361.500615 eV Core-core repulsion = 24341.020660 eV Total energy + Delta-G solvation = -4020.479955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.65993 -37.31880 -36.82483 -35.89659 -35.81794 -35.39183 -33.60031 -32.48085 -31.23628 -29.45338 -27.94944 -27.84771 -26.35399 -24.41154 -23.76283 -22.17630 -21.49267 -20.00995 -18.59991 -18.03905 -17.31874 -17.05110 -16.62340 -15.97925 -15.59092 -15.53612 -15.14620 -14.98087 -14.27114 -14.25172 -14.13578 -13.73280 -13.42869 -13.02678 -12.95078 -12.84489 -12.56435 -12.41959 -12.35738 -12.11244 -11.98634 -11.90280 -11.66428 -11.64780 -11.43635 -11.35199 -11.23847 -11.13470 -10.99895 -10.65625 -10.45846 -10.39876 -10.06036 -9.33736 -8.89634 -8.80149 -7.95966 -7.68963 -6.79013 -6.39512 -4.92957 0.83817 1.54241 1.95342 3.04156 3.10190 3.11649 3.31542 3.47048 3.94275 4.02357 4.22445 4.43155 4.54641 4.77313 4.85431 4.94976 5.01246 5.12477 5.26718 5.43726 5.52574 5.55388 5.60490 5.66456 5.76483 5.81714 5.84492 5.90744 5.91318 6.00981 6.10629 6.27040 6.32673 6.42688 6.58964 6.70125 6.81215 7.18356 7.23545 7.40068 7.69601 7.82832 7.99040 8.17709 8.77568 9.24304 10.35737 10.55721 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008423 B = 0.004863 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.324037 B = 5756.028617 C = 8472.874851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.122 3.878 3 N -0.744 5.744 4 C 0.217 3.783 5 C -0.203 4.203 6 C -0.017 4.017 7 C -0.709 4.709 8 S 2.700 3.300 9 O -0.956 6.956 10 O -0.973 6.973 11 N -1.008 6.008 12 C 0.086 3.914 13 C 0.089 3.911 14 C 0.008 3.992 15 C 0.103 3.897 16 N -0.701 5.701 17 C 0.546 3.454 18 O -0.566 6.566 19 C -0.539 4.539 20 H 0.068 0.932 21 C 0.089 3.911 22 N -0.745 5.745 23 Si 0.912 3.088 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.266 1.266 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.400 0.600 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.161 0.839 42 H 0.385 0.615 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.140 -13.496 0.132 13.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.003 4.003 3 N -0.375 5.375 4 C 0.110 3.890 5 C -0.227 4.227 6 C -0.038 4.038 7 C -0.801 4.801 8 S 2.793 3.207 9 O -0.946 6.946 10 O -0.964 6.964 11 N -0.846 5.846 12 C -0.059 4.059 13 C -0.056 4.056 14 C -0.016 4.016 15 C 0.001 3.999 16 N -0.347 5.347 17 C 0.355 3.645 18 O -0.450 6.450 19 C -0.575 4.575 20 H 0.086 0.914 21 C -0.134 4.134 22 N -0.372 5.372 23 Si 0.736 3.264 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.191 1.191 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.236 0.764 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.178 0.822 42 H 0.218 0.782 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.233 -13.294 -0.017 13.351 hybrid contribution -2.245 0.706 0.299 2.372 sum -1.012 -12.589 0.282 12.632 Atomic orbital electron populations 1.21974 0.94701 1.02803 1.02773 1.21258 0.94379 0.83605 1.01041 1.44649 1.03441 1.07256 1.82188 1.18009 0.84063 0.92605 0.94360 1.20362 0.92579 0.97066 1.12670 1.20371 0.95241 0.94242 0.93954 1.30327 1.24689 1.00004 1.25093 1.01539 0.74021 0.73148 0.71996 1.93577 1.85931 1.39334 1.75801 1.93501 1.75425 1.51235 1.76210 1.57310 1.80913 1.14316 1.32083 1.21572 0.99911 0.86344 0.98112 1.21595 1.03689 0.82949 0.97362 1.21035 0.90953 0.99306 0.90314 1.17499 0.90785 0.85948 1.05630 1.43907 1.20225 1.15067 1.55470 1.17017 0.88693 0.80346 0.78400 1.90620 1.24800 1.79389 1.50168 1.19946 1.01458 1.00242 1.35824 0.91413 1.25727 0.95427 0.98909 0.93338 1.69981 1.19617 1.25302 1.22294 0.86357 0.80897 0.79977 0.79154 1.19206 1.20307 1.19066 0.91051 0.91880 0.91969 0.92317 0.92379 0.76418 0.85959 0.85418 0.92913 0.90942 0.90211 0.90688 0.91670 0.90696 0.82197 0.78164 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 10.03 37.16 0.37 -0.96 16 2 C 0.12 1.24 5.63 -4.04 -0.02 1.22 16 3 N -0.74 -10.24 5.70 -58.44 -0.33 -10.57 16 4 C 0.22 3.72 6.68 -83.53 -0.56 3.16 16 5 C -0.20 -3.15 9.31 -39.41 -0.37 -3.52 16 6 C -0.02 -0.27 9.51 -39.52 -0.38 -0.65 16 7 C -0.71 -13.36 5.98 -39.56 -0.24 -13.60 16 8 S 2.70 48.36 5.70 -107.50 -0.61 47.75 16 9 O -0.96 -20.41 16.43 -57.17 -0.94 -21.35 16 10 O -0.97 -17.64 15.86 -57.17 -0.91 -18.55 16 11 N -1.01 -15.20 3.58 -129.20 -0.46 -15.66 16 12 C 0.09 0.99 10.63 59.85 0.64 1.62 16 13 C 0.09 1.33 10.30 59.84 0.62 1.95 16 14 C 0.01 0.17 8.16 -39.38 -0.32 -0.15 16 15 C 0.10 2.16 6.33 -83.53 -0.53 1.63 16 16 N -0.70 -15.35 4.99 -12.29 -0.06 -15.41 16 17 C 0.55 14.73 7.41 -14.93 -0.11 14.62 16 18 O -0.57 -17.04 12.29 5.10 0.06 -16.98 16 19 C -0.54 -14.28 9.31 -37.54 -0.35 -14.63 16 20 H 0.07 1.62 7.85 -52.49 -0.41 1.21 16 21 C 0.09 2.34 5.50 -17.35 -0.10 2.25 16 22 N -0.74 -20.96 11.73 55.55 0.65 -20.31 16 23 Si 0.91 18.99 29.56 -169.99 -5.02 13.97 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.56 7.95 -51.93 -0.41 0.15 16 31 H 0.06 0.58 7.95 -51.93 -0.41 0.17 16 32 H 0.40 5.39 7.09 -40.82 -0.29 5.10 16 33 H 0.12 1.52 6.73 -52.48 -0.35 1.16 16 34 H 0.13 1.76 7.60 -52.49 -0.40 1.36 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.66 7.92 -51.93 -0.41 0.24 16 37 H 0.08 0.88 7.02 -51.93 -0.36 0.51 16 38 H 0.07 0.88 7.79 -51.93 -0.40 0.47 16 39 H 0.06 0.96 8.01 -51.93 -0.42 0.54 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.16 4.06 5.74 -52.49 -0.30 3.76 16 42 H 0.39 7.17 7.67 -40.82 -0.31 6.86 16 43 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -35.35 370.25 -9.12 -44.47 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -5.74 Total: 14.12 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.34 Total: -7.05 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -0.21 Total: -61.95 kcal Atomic # 8 Polarization: -55.10 SS G_CDS: -1.78 Total: -56.88 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Atomic # 16 Polarization: 48.36 SS G_CDS: -0.61 Total: 47.75 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.35 -9.12 -44.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274923950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.828 kcal (2) G-P(sol) polarization free energy of solvation -35.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds