Wall clock time and date at job start Wed Apr 1 2020 00:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38350 * 127.15102 * 2 1 4 4 C 1.39777 * 126.56586 * 0.02562 * 3 2 1 5 5 H 1.07994 * 120.00032 * 0.27952 * 4 3 2 6 6 C 1.40082 * 120.00134 * 180.28460 * 4 3 2 7 7 N 1.30821 * 119.99644 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00240 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.46926 * 59.99959 * 8 6 4 10 10 H 1.48498 * 109.47386 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47100 * 299.99940 * 8 6 4 12 12 N 1.33098 * 106.86914 * 180.27271 * 3 2 1 13 13 N 1.28509 * 109.74614 * 359.74473 * 12 3 2 14 14 C 1.32388 * 110.20753 * 359.97438 * 13 12 3 15 15 S 1.76199 * 126.26219 * 180.02562 * 14 13 12 16 16 C 1.80997 * 100.00003 * 0.02615 * 15 14 13 17 17 O 1.45199 * 109.47411 * 74.99765 * 16 15 14 18 18 C 1.34534 * 116.99898 * 75.00082 * 17 16 15 19 19 O 1.21433 * 119.99781 * 0.02562 * 18 17 16 20 20 O 1.34524 * 120.00171 * 180.02562 * 18 17 16 21 21 C 1.45202 * 117.00136 * 180.02562 * 20 18 17 22 22 C 1.53005 * 109.46788 * 269.99457 * 21 20 18 23 23 C 1.53002 * 109.46803 * 180.02562 * 22 21 20 24 24 C 1.52992 * 109.47165 * 60.00145 * 23 22 21 25 25 C 1.53001 * 109.47470 * 299.99597 * 24 23 22 26 26 C 1.52999 * 109.47316 * 149.99853 * 21 20 18 27 27 H 1.08993 * 109.47848 * 270.17937 * 1 2 3 28 28 H 1.08999 * 109.47223 * 30.18297 * 1 2 3 29 29 H 1.08998 * 109.47025 * 150.17603 * 1 2 3 30 30 H 0.97006 * 119.99487 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47019 * 195.00173 * 16 15 14 32 32 H 1.09003 * 109.47152 * 315.00141 * 16 15 14 33 33 H 1.08998 * 109.47474 * 29.99785 * 21 20 18 34 34 H 1.08999 * 109.46887 * 300.00200 * 22 21 20 35 35 H 1.09004 * 109.46905 * 60.00326 * 22 21 20 36 36 H 1.09004 * 109.47066 * 299.99694 * 23 22 21 37 37 H 1.08999 * 109.47029 * 180.02562 * 23 22 21 38 38 H 1.08998 * 109.47286 * 179.97438 * 24 23 22 39 39 H 1.09004 * 109.47496 * 59.99813 * 24 23 22 40 40 H 1.09004 * 109.46937 * 300.00558 * 25 24 23 41 41 H 1.08997 * 109.47617 * 179.97438 * 25 24 23 42 42 H 1.08999 * 109.46891 * 299.99846 * 26 21 20 43 43 H 1.08999 * 109.47303 * 59.99222 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8595 2.7005 0.0055 6 6 2.8767 3.4569 -0.0056 7 7 4.1475 3.1466 -0.0113 8 14 2.3529 5.2499 -0.0056 9 1 1.5481 5.5305 1.2103 10 1 3.5580 6.1177 -0.0133 11 1 1.5364 5.5271 -1.2146 12 7 3.5490 0.6413 -0.0061 13 7 3.5370 -0.6437 -0.0043 14 6 2.2904 -1.0894 0.0035 15 16 1.7873 -2.7780 0.0092 16 6 3.4058 -3.5881 0.0023 17 8 4.0042 -3.4855 1.3213 18 6 3.5078 -4.2868 2.2812 19 8 2.6000 -5.0514 2.0244 20 8 4.0170 -4.2411 3.5255 21 6 3.4330 -5.1343 4.5100 22 6 2.2694 -4.4300 5.2108 23 6 1.6544 -5.3710 6.2487 24 6 2.7156 -5.7540 7.2821 25 6 3.8792 -6.4583 6.5814 26 6 4.4939 -5.5179 5.5436 27 1 -0.3634 0.0032 1.0275 28 1 -0.3633 0.8883 -0.5167 29 1 -0.3633 -0.8915 -0.5111 30 1 4.8179 3.8478 -0.0159 31 1 3.2850 -4.6389 -0.2611 32 1 4.0522 -3.1023 -0.7286 33 1 3.0677 -6.0333 4.0137 34 1 2.6349 -3.5310 5.7072 35 1 1.5136 -4.1568 4.4745 36 1 1.2891 -6.2702 5.7526 37 1 0.8252 -4.8694 6.7477 38 1 2.2774 -6.4239 8.0218 39 1 3.0809 -4.8547 7.7782 40 1 3.5138 -7.3575 6.0853 41 1 4.6354 -6.7307 7.3176 42 1 5.3228 -6.0196 5.0444 43 1 4.8593 -4.6189 6.0400 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280057793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:38 Heat of formation + Delta-G solvation = -72.656037 kcal Electronic energy + Delta-G solvation = -27323.644946 eV Core-core repulsion = 23303.192857 eV Total energy + Delta-G solvation = -4020.452090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80081 -40.53314 -38.95187 -37.08145 -35.66451 -33.71832 -33.34259 -31.10384 -30.37108 -29.38566 -27.85931 -26.47990 -25.48575 -23.51289 -22.90184 -21.52370 -20.90091 -20.53110 -20.20091 -18.83447 -17.63229 -17.45455 -17.10914 -16.24125 -15.85446 -15.45476 -15.13913 -14.70156 -14.66299 -14.50200 -14.37447 -13.83558 -13.66787 -13.37018 -13.28699 -12.76959 -12.60095 -12.50170 -12.34192 -12.24686 -11.60158 -11.52005 -11.41293 -11.30884 -11.19924 -11.09775 -11.04261 -10.94570 -10.80067 -10.65919 -10.42026 -10.17232 -10.08344 -9.74498 -9.67873 -8.79536 -8.56262 -8.40614 -7.04072 -6.66745 -4.60960 1.64485 1.75434 2.49338 2.72391 2.91314 3.05198 3.07510 3.33111 3.85471 4.05470 4.20504 4.38082 4.39308 4.40958 4.66400 4.84263 4.86409 4.88288 5.03570 5.12778 5.18288 5.30418 5.31394 5.33883 5.49725 5.52303 5.58962 5.71902 5.77227 5.84674 5.86436 5.91309 5.95865 6.02068 6.02339 6.18433 6.72640 6.78114 6.86170 7.21773 7.45638 7.85478 8.06271 8.14902 8.67570 8.82878 10.25549 10.60544 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.002702 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.523836 B =10359.445221 C =11038.123397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.515 5.515 3 C 0.348 3.652 4 C -0.446 4.446 5 H 0.084 0.916 6 C 0.078 3.922 7 N -0.734 5.734 8 Si 0.922 3.078 9 H -0.265 1.265 10 H -0.276 1.276 11 H -0.265 1.265 12 N -0.330 5.330 13 N -0.271 5.271 14 C 0.030 3.970 15 S -0.028 6.028 16 C 0.103 3.897 17 O -0.302 6.302 18 C 0.600 3.400 19 O -0.547 6.547 20 O -0.325 6.325 21 C 0.105 3.895 22 C -0.141 4.141 23 C -0.114 4.114 24 C -0.125 4.125 25 C -0.114 4.114 26 C -0.118 4.118 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.281 0.719 31 H 0.117 0.883 32 H 0.151 0.849 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.776 -15.324 9.152 18.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.217 5.217 3 C 0.104 3.896 4 C -0.486 4.486 5 H 0.102 0.898 6 C -0.148 4.148 7 N -0.358 5.358 8 Si 0.745 3.255 9 H -0.190 1.190 10 H -0.200 1.200 11 H -0.190 1.190 12 N -0.178 5.178 13 N -0.118 5.118 14 C -0.341 4.341 15 S 0.198 5.802 16 C -0.083 4.083 17 O -0.219 6.219 18 C 0.408 3.592 19 O -0.447 6.447 20 O -0.243 6.243 21 C 0.051 3.949 22 C -0.179 4.179 23 C -0.152 4.152 24 C -0.163 4.163 25 C -0.151 4.151 26 C -0.155 4.155 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.135 0.865 32 H 0.169 0.831 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.167 -15.854 9.103 18.554 hybrid contribution -0.731 1.474 -0.121 1.650 sum -3.897 -14.380 8.982 17.397 Atomic orbital electron populations 1.21494 0.78522 1.02691 1.01644 1.46005 1.06052 1.05233 1.64412 1.21630 0.84751 0.88396 0.94778 1.18080 0.94709 0.86437 1.49384 0.89796 1.25807 0.94343 1.01334 0.93310 1.70004 1.00713 1.35189 1.29902 0.86162 0.78987 0.80570 0.79743 1.18954 1.20034 1.18961 1.75479 1.15203 0.97746 1.29376 1.74556 1.14870 1.07610 1.14763 1.25287 0.91762 0.92505 1.24569 1.85012 1.09379 0.92441 1.93346 1.25269 0.97303 1.03983 0.81723 1.86710 1.59307 1.57173 1.18753 1.20439 0.78729 0.77818 0.82183 1.91018 1.30194 1.41031 1.82483 1.86350 1.59885 1.61511 1.16569 1.22915 0.93996 0.91945 0.86054 1.22008 0.97375 0.99506 0.98962 1.21479 0.98052 0.99427 0.96209 1.21622 0.95970 1.00770 0.97889 1.21493 0.98036 0.98076 0.97541 1.21646 0.97403 1.00797 0.95672 0.92599 0.90254 0.91589 0.90838 0.86523 0.83139 0.89190 0.90604 0.90725 0.91565 0.91153 0.91580 0.91521 0.91549 0.90888 0.90747 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.88 10.87 59.85 0.65 2.53 16 2 N -0.51 -12.56 3.26 -123.18 -0.40 -12.96 16 3 C 0.35 9.77 7.53 -154.81 -1.17 8.61 16 4 C -0.45 -11.81 9.04 -38.32 -0.35 -12.15 16 5 H 0.08 2.00 7.31 -52.49 -0.38 1.62 16 6 C 0.08 1.99 5.50 -17.29 -0.10 1.89 16 7 N -0.73 -20.17 11.94 55.56 0.66 -19.51 16 8 Si 0.92 18.47 29.56 -169.99 -5.03 13.45 16 9 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 10 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 11 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 12 N -0.33 -9.96 10.48 31.26 0.33 -9.64 16 13 N -0.27 -7.48 11.40 30.89 0.35 -7.13 16 14 C 0.03 0.73 8.09 -87.28 -0.71 0.02 16 15 S -0.03 -0.52 21.49 -107.50 -2.31 -2.83 16 16 C 0.10 1.70 6.09 101.05 0.62 2.32 16 17 O -0.30 -5.69 10.36 -47.96 -0.50 -6.19 16 18 C 0.60 10.50 8.67 101.05 0.88 11.38 16 19 O -0.55 -9.60 14.76 -27.41 -0.40 -10.01 16 20 O -0.33 -5.20 9.93 -47.93 -0.48 -5.68 16 21 C 0.11 1.27 2.46 -26.73 -0.07 1.21 16 22 C -0.14 -1.62 5.56 -26.73 -0.15 -1.76 16 23 C -0.11 -0.97 5.92 -26.73 -0.16 -1.13 16 24 C -0.13 -0.89 5.92 -26.73 -0.16 -1.05 16 25 C -0.11 -0.80 5.92 -26.76 -0.16 -0.96 16 26 C -0.12 -1.09 5.58 -26.76 -0.15 -1.24 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.36 7.54 -51.93 -0.39 0.97 16 29 H 0.07 1.07 7.85 -51.93 -0.41 0.66 16 30 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 31 H 0.12 1.55 7.70 -51.92 -0.40 1.15 16 32 H 0.15 2.45 7.84 -51.91 -0.41 2.05 16 33 H 0.09 1.09 7.16 -51.93 -0.37 0.72 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -34.27 374.89 -9.28 -43.55 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.15 Total: 1.65 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: -1.01 Total: 9.66 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.94 Total: -49.24 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -1.38 Total: -21.87 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 16 Polarization: -0.52 SS G_CDS: -2.31 Total: -2.83 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.27 -9.28 -43.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280057793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.109 kcal (2) G-P(sol) polarization free energy of solvation -34.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds