Wall clock time and date at job start Wed Apr 1 2020 00:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38350 * 127.15102 * 2 1 4 4 C 1.39777 * 126.56586 * 0.02562 * 3 2 1 5 5 H 1.07994 * 120.00032 * 0.27952 * 4 3 2 6 6 C 1.40082 * 120.00134 * 180.28460 * 4 3 2 7 7 N 1.30821 * 119.99644 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00240 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.46926 * 59.99959 * 8 6 4 10 10 H 1.48498 * 109.47386 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47100 * 299.99940 * 8 6 4 12 12 N 1.33098 * 106.86914 * 180.27271 * 3 2 1 13 13 N 1.28509 * 109.74614 * 359.74473 * 12 3 2 14 14 C 1.32388 * 110.20753 * 359.97438 * 13 12 3 15 15 S 1.76199 * 126.26219 * 180.02562 * 14 13 12 16 16 C 1.80997 * 100.00003 * 0.02615 * 15 14 13 17 17 O 1.45199 * 109.47411 * 74.99765 * 16 15 14 18 18 C 1.34534 * 116.99898 * 75.00082 * 17 16 15 19 19 O 1.21433 * 119.99781 * 0.02562 * 18 17 16 20 20 O 1.34524 * 120.00171 * 180.02562 * 18 17 16 21 21 C 1.45202 * 117.00136 * 180.02562 * 20 18 17 22 22 C 1.53005 * 109.46788 * 269.99457 * 21 20 18 23 23 C 1.53002 * 109.46803 * 180.02562 * 22 21 20 24 24 C 1.52992 * 109.47165 * 60.00145 * 23 22 21 25 25 C 1.53001 * 109.47470 * 299.99597 * 24 23 22 26 26 C 1.52999 * 109.47316 * 149.99853 * 21 20 18 27 27 H 1.08993 * 109.47848 * 270.17937 * 1 2 3 28 28 H 1.08999 * 109.47223 * 30.18297 * 1 2 3 29 29 H 1.08998 * 109.47025 * 150.17603 * 1 2 3 30 30 H 0.97006 * 119.99487 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47019 * 195.00173 * 16 15 14 32 32 H 1.09003 * 109.47152 * 315.00141 * 16 15 14 33 33 H 1.08998 * 109.47474 * 29.99785 * 21 20 18 34 34 H 1.08999 * 109.46887 * 300.00200 * 22 21 20 35 35 H 1.09004 * 109.46905 * 60.00326 * 22 21 20 36 36 H 1.09004 * 109.47066 * 299.99694 * 23 22 21 37 37 H 1.08999 * 109.47029 * 180.02562 * 23 22 21 38 38 H 1.08998 * 109.47286 * 179.97438 * 24 23 22 39 39 H 1.09004 * 109.47496 * 59.99813 * 24 23 22 40 40 H 1.09004 * 109.46937 * 300.00558 * 25 24 23 41 41 H 1.08997 * 109.47617 * 179.97438 * 25 24 23 42 42 H 1.08999 * 109.46891 * 299.99846 * 26 21 20 43 43 H 1.08999 * 109.47303 * 59.99222 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8595 2.7005 0.0055 6 6 2.8767 3.4569 -0.0056 7 7 4.1475 3.1466 -0.0113 8 14 2.3529 5.2499 -0.0056 9 1 1.5481 5.5305 1.2103 10 1 3.5580 6.1177 -0.0133 11 1 1.5364 5.5271 -1.2146 12 7 3.5490 0.6413 -0.0061 13 7 3.5370 -0.6437 -0.0043 14 6 2.2904 -1.0894 0.0035 15 16 1.7873 -2.7780 0.0092 16 6 3.4058 -3.5881 0.0023 17 8 4.0042 -3.4855 1.3213 18 6 3.5078 -4.2868 2.2812 19 8 2.6000 -5.0514 2.0244 20 8 4.0170 -4.2411 3.5255 21 6 3.4330 -5.1343 4.5100 22 6 2.2694 -4.4300 5.2108 23 6 1.6544 -5.3710 6.2487 24 6 2.7156 -5.7540 7.2821 25 6 3.8792 -6.4583 6.5814 26 6 4.4939 -5.5179 5.5436 27 1 -0.3634 0.0032 1.0275 28 1 -0.3633 0.8883 -0.5167 29 1 -0.3633 -0.8915 -0.5111 30 1 4.8179 3.8478 -0.0159 31 1 3.2850 -4.6389 -0.2611 32 1 4.0522 -3.1023 -0.7286 33 1 3.0677 -6.0333 4.0137 34 1 2.6349 -3.5310 5.7072 35 1 1.5136 -4.1568 4.4745 36 1 1.2891 -6.2702 5.7526 37 1 0.8252 -4.8694 6.7477 38 1 2.2774 -6.4239 8.0218 39 1 3.0809 -4.8547 7.7782 40 1 3.5138 -7.3575 6.0853 41 1 4.6354 -6.7307 7.3176 42 1 5.3228 -6.0196 5.0444 43 1 4.8593 -4.6189 6.0400 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280057793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:37 Heat of formation + Delta-G solvation = -91.759962 kcal Electronic energy + Delta-G solvation = -27324.473355 eV Core-core repulsion = 23303.192857 eV Total energy + Delta-G solvation = -4021.280498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.48672 -42.08820 -40.03722 -38.14726 -36.96514 -35.64153 -35.18347 -31.83820 -31.39185 -31.17850 -29.25216 -28.18898 -27.37399 -24.57499 -23.64384 -22.84324 -22.61852 -22.42435 -21.02455 -20.06823 -19.32052 -18.94180 -18.60531 -17.71933 -17.25328 -16.96310 -16.59749 -16.29911 -16.05661 -15.58007 -15.36182 -15.14182 -14.86966 -14.81980 -14.13980 -14.01705 -13.97391 -13.79585 -13.71708 -13.26254 -13.22769 -12.94110 -12.79150 -12.58146 -12.49679 -12.34646 -12.14324 -12.04041 -12.02286 -11.78983 -11.59107 -11.56850 -11.47462 -11.41368 -10.98343 -10.66263 -10.40727 -10.37796 -8.81132 -8.55462 -6.61919 0.17967 0.43519 0.84903 1.18159 1.32580 1.41580 1.57118 1.61074 2.17598 2.43375 2.47161 2.91695 3.32698 3.56674 3.59070 3.61998 3.90153 4.00846 4.04637 4.08330 4.13983 4.17831 4.40676 4.41104 4.46012 4.51416 4.58178 4.61299 4.84334 4.84946 4.93025 5.00686 5.04412 5.12994 5.14159 5.26073 5.28816 5.30029 5.42789 5.53252 5.54377 5.99630 6.19745 6.72363 6.73852 6.89213 8.39656 8.61005 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.002702 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.523836 B =10359.445221 C =11038.123397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.521 5.521 3 C 0.319 3.681 4 C -0.470 4.470 5 H 0.104 0.896 6 C 0.029 3.971 7 N -0.786 5.786 8 Si 1.008 2.992 9 H -0.255 1.255 10 H -0.272 1.272 11 H -0.252 1.252 12 N -0.385 5.385 13 N -0.313 5.313 14 C 0.040 3.960 15 S 0.011 5.989 16 C 0.098 3.902 17 O -0.324 6.324 18 C 0.599 3.401 19 O -0.551 6.551 20 O -0.338 6.338 21 C 0.097 3.903 22 C -0.141 4.141 23 C -0.110 4.110 24 C -0.123 4.123 25 C -0.109 4.109 26 C -0.115 4.115 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.285 0.715 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.521 -16.248 10.149 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.223 5.223 3 C 0.073 3.927 4 C -0.510 4.510 5 H 0.122 0.878 6 C -0.193 4.193 7 N -0.410 5.410 8 Si 0.826 3.174 9 H -0.179 1.179 10 H -0.196 1.196 11 H -0.176 1.176 12 N -0.232 5.232 13 N -0.158 5.158 14 C -0.333 4.333 15 S 0.236 5.764 16 C -0.087 4.087 17 O -0.242 6.242 18 C 0.408 3.592 19 O -0.452 6.452 20 O -0.257 6.257 21 C 0.044 3.956 22 C -0.179 4.179 23 C -0.147 4.147 24 C -0.161 4.161 25 C -0.146 4.146 26 C -0.152 4.152 27 H 0.089 0.911 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.173 0.827 32 H 0.169 0.831 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.926 -16.806 10.111 20.223 hybrid contribution -0.239 1.531 -0.401 1.600 sum -5.166 -15.276 9.710 18.824 Atomic orbital electron populations 1.21850 0.75321 1.04605 1.03185 1.46345 1.08056 1.04366 1.63534 1.22059 0.85088 0.89894 0.95634 1.18613 0.96048 0.86422 1.49924 0.87812 1.27006 0.93900 1.06531 0.91813 1.70154 1.02393 1.37164 1.31327 0.84890 0.78699 0.73438 0.80366 1.17855 1.19612 1.17628 1.75339 1.17247 0.99061 1.31590 1.74429 1.16797 1.07091 1.17464 1.26294 0.91309 0.95249 1.20448 1.84827 1.10544 0.88085 1.92934 1.25547 0.96139 1.05833 0.81156 1.86687 1.59902 1.57900 1.19713 1.20483 0.78678 0.77572 0.82479 1.90994 1.30325 1.41166 1.82674 1.86372 1.60375 1.62552 1.16391 1.23335 0.95247 0.91271 0.85781 1.22022 0.96637 1.00089 0.99105 1.21487 0.98626 0.98848 0.95761 1.21634 0.95523 1.01197 0.97714 1.21520 0.98425 0.97537 0.97166 1.21719 0.96862 1.01251 0.95388 0.91144 0.88960 0.89112 0.90439 0.82652 0.83098 0.89157 0.91415 0.93140 0.91059 0.90436 0.89575 0.91680 0.90793 0.88962 0.90271 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.31 10.87 127.77 1.39 4.70 16 2 N -0.52 -25.56 3.26 -543.64 -1.77 -27.33 16 3 C 0.32 18.40 7.53 133.23 1.00 19.40 16 4 C -0.47 -25.22 9.04 23.09 0.21 -25.01 16 5 H 0.10 4.90 7.31 -2.91 -0.02 4.88 16 6 C 0.03 1.48 5.50 85.29 0.47 1.94 16 7 N -0.79 -44.73 11.94 21.86 0.26 -44.47 16 8 Si 1.01 37.73 29.56 68.60 2.03 39.76 16 9 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 10 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 11 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 12 N -0.39 -24.29 10.48 -55.02 -0.58 -24.87 16 13 N -0.31 -17.88 11.40 -56.17 -0.64 -18.52 16 14 C 0.04 1.97 8.09 179.18 1.45 3.42 16 15 S 0.01 0.40 21.49 -56.49 -1.21 -0.81 16 16 C 0.10 3.17 6.09 113.37 0.69 3.86 16 17 O -0.32 -12.28 10.36 -46.86 -0.49 -12.76 16 18 C 0.60 20.93 8.67 113.37 0.98 21.92 16 19 O -0.55 -18.87 14.76 27.89 0.41 -18.46 16 20 O -0.34 -10.96 9.93 -46.76 -0.46 -11.43 16 21 C 0.10 2.31 2.46 30.60 0.08 2.39 16 22 C -0.14 -3.22 5.56 30.60 0.17 -3.05 16 23 C -0.11 -1.71 5.92 30.59 0.18 -1.52 16 24 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 25 C -0.11 -1.27 5.92 30.58 0.18 -1.09 16 26 C -0.11 -1.99 5.58 30.58 0.17 -1.82 16 27 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.09 3.02 7.54 -2.39 -0.02 3.01 16 29 H 0.09 2.75 7.85 -2.39 -0.02 2.73 16 30 H 0.29 14.68 8.30 -92.70 -0.77 13.91 16 31 H 0.16 3.79 7.70 -2.39 -0.02 3.77 16 32 H 0.15 4.92 7.84 -2.39 -0.02 4.90 16 33 H 0.09 2.13 7.16 -2.39 -0.02 2.11 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -78.10 374.89 5.73 -72.37 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 1.03 Total: 22.65 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: 7.15 Total: 23.87 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -2.73 Total: -115.18 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -0.54 Total: -42.65 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -1.21 Total: -0.81 kcal Total: -78.10 5.73 -72.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280057793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.389 kcal (2) G-P(sol) polarization free energy of solvation -78.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds