Wall clock time and date at job start Tue Mar 31 2020 23:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45194 * 109.46940 * 2 1 4 4 C 1.34233 * 117.00047 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99745 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00083 * 179.97438 * 4 3 2 7 7 C 1.53007 * 109.47310 * 60.00366 * 6 4 3 8 8 C 1.53003 * 109.47501 * 300.00345 * 6 4 3 9 9 C 1.50702 * 109.47428 * 180.02562 * 6 4 3 10 10 O 1.20763 * 119.99760 * 359.97438 * 9 6 4 11 11 C 1.50698 * 120.00423 * 180.02562 * 9 6 4 12 12 S 1.81001 * 109.47052 * 179.97438 * 11 9 6 13 13 C 1.76202 * 99.99784 * 179.97438 * 12 11 9 14 14 N 1.32388 * 126.26021 * 359.97438 * 13 12 11 15 15 N 1.28516 * 110.20609 * 180.02562 * 14 13 12 16 16 C 1.33098 * 109.74302 * 0.02562 * 15 14 13 17 17 C 1.39776 * 126.56257 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99778 * 186.09356 * 17 16 15 19 19 C 1.40085 * 120.00068 * 6.08606 * 17 16 15 20 20 N 1.30808 * 119.99942 * 184.12744 * 19 17 16 21 21 Si 1.86799 * 119.99669 * 4.13543 * 19 17 16 22 22 H 1.48509 * 109.46950 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47355 * 299.99259 * 21 19 17 24 24 H 1.48501 * 109.47215 * 59.99928 * 21 19 17 25 25 N 1.36669 * 126.25987 * 180.30691 * 13 12 11 26 26 C 1.46505 * 127.15024 * 359.97438 * 25 13 12 27 27 H 1.08995 * 109.47628 * 300.00190 * 1 2 3 28 28 H 1.08998 * 109.46831 * 60.00629 * 1 2 3 29 29 H 1.09004 * 109.46592 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47343 * 239.99364 * 2 1 3 31 31 H 1.09001 * 109.46536 * 119.99799 * 2 1 3 32 32 H 1.08993 * 109.47063 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.46662 * 300.00116 * 7 6 4 34 34 H 1.08997 * 109.46725 * 59.99476 * 7 6 4 35 35 H 1.09001 * 109.47092 * 300.00289 * 8 6 4 36 36 H 1.08999 * 109.47050 * 59.99528 * 8 6 4 37 37 H 1.08993 * 109.47256 * 179.97438 * 8 6 4 38 38 H 1.09003 * 109.46642 * 59.99715 * 11 9 6 39 39 H 1.08993 * 109.47041 * 300.00043 * 11 9 6 40 40 H 0.97000 * 120.00392 * 354.84969 * 20 19 17 41 41 H 1.08991 * 109.47295 * 270.14314 * 26 25 13 42 42 H 1.08996 * 109.46934 * 30.14387 * 26 25 13 43 43 H 1.09000 * 109.46691 * 150.13746 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 6 3.4486 3.6851 1.2486 8 6 3.4497 3.6837 -1.2499 9 6 5.4256 2.8586 0.0001 10 8 5.9739 1.7826 0.0011 11 6 6.2464 4.1225 0.0002 12 16 8.0062 3.6991 0.0011 13 6 8.7096 5.3146 0.0003 14 7 8.0434 6.4586 -0.0011 15 7 8.8622 7.4491 -0.0019 16 6 10.1142 6.9975 -0.0015 17 6 11.2785 7.7709 -0.0025 18 1 12.2429 7.2950 -0.1013 19 6 11.1943 9.1635 0.1245 20 7 12.2762 9.8943 0.0425 21 14 9.5372 9.9767 0.4110 22 1 9.7182 11.4474 0.5101 23 1 8.6300 9.6645 -0.7224 24 1 8.9464 9.4650 1.6736 25 7 10.0426 5.6158 -0.0053 26 6 11.1630 4.6718 -0.0113 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8648 4.6924 1.2480 33 1 2.3601 3.7421 1.2481 34 1 3.7841 3.1534 2.1390 35 1 3.7860 3.1511 -2.1394 36 1 2.3612 3.7407 -1.2504 37 1 3.8659 4.6910 -1.2500 38 1 6.0132 4.7070 0.8902 39 1 6.0134 4.7070 -0.8897 40 1 13.1446 9.4685 -0.0311 41 1 11.4437 4.4347 1.0148 42 1 10.8659 3.7587 -0.5270 43 1 12.0127 5.1198 -0.5263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281069726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:23 Heat of formation + Delta-G solvation = -66.726605 kcal Electronic energy + Delta-G solvation = -27030.550505 eV Core-core repulsion = 23010.355535 eV Total energy + Delta-G solvation = -4020.194970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32818 -40.97444 -39.39484 -36.70063 -35.53772 -33.97550 -33.61627 -31.99200 -30.33717 -29.75281 -27.83749 -26.77029 -25.37903 -25.11175 -23.70887 -22.04022 -21.48820 -20.35277 -19.22373 -18.23621 -17.63309 -17.12804 -16.87369 -16.69793 -15.89160 -15.57076 -15.27523 -15.04538 -14.51708 -14.50720 -14.10021 -13.95448 -13.64310 -13.39376 -13.21480 -13.09518 -12.74764 -12.67167 -12.59802 -12.59243 -12.52186 -12.33971 -12.24276 -11.96404 -11.90668 -11.66283 -11.18428 -10.90495 -10.84193 -10.64022 -10.40921 -9.93171 -9.66646 -9.60450 -9.44010 -9.14439 -8.72543 -8.44283 -7.46346 -7.14614 -4.88199 1.56011 1.68717 1.97642 2.24559 2.48308 2.85969 3.53490 3.55766 3.58810 3.83396 4.01044 4.10162 4.12807 4.35006 4.37262 4.41216 4.55331 4.60050 4.85242 4.88861 5.06810 5.08395 5.17905 5.21666 5.31162 5.33728 5.37036 5.37493 5.38314 5.45055 5.56475 5.71564 5.75446 5.75762 5.90242 6.13848 6.31908 6.60166 7.08032 7.17799 7.36244 7.48068 7.53113 8.00950 8.30765 8.51653 9.92123 10.05310 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025603 B = 0.002418 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.371019 B =11578.075282 C =12457.184074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.355 6.355 4 C 0.466 3.534 5 O -0.470 6.470 6 C -0.091 4.091 7 C -0.142 4.142 8 C -0.142 4.142 9 C 0.374 3.626 10 O -0.393 6.393 11 C -0.157 4.157 12 S 0.010 5.990 13 C 0.055 3.945 14 N -0.272 5.272 15 N -0.415 5.415 16 C 0.346 3.654 17 C -0.491 4.491 18 H 0.083 0.917 19 C 0.063 3.937 20 N -0.806 5.806 21 Si 1.113 2.887 22 H -0.311 1.311 23 H -0.260 1.260 24 H -0.280 1.280 25 N -0.511 5.511 26 C 0.101 3.899 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.284 0.716 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.114 -14.769 0.014 24.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.273 6.273 4 C 0.306 3.694 5 O -0.354 6.354 6 C -0.095 4.095 7 C -0.199 4.199 8 C -0.199 4.199 9 C 0.243 3.757 10 O -0.260 6.260 11 C -0.306 4.306 12 S 0.237 5.763 13 C -0.319 4.319 14 N -0.116 5.116 15 N -0.265 5.265 16 C 0.103 3.897 17 C -0.532 4.532 18 H 0.101 0.899 19 C -0.159 4.159 20 N -0.430 5.430 21 Si 0.942 3.058 22 H -0.241 1.241 23 H -0.186 1.186 24 H -0.207 1.207 25 N -0.212 5.212 26 C -0.044 4.044 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.872 -14.382 0.140 24.531 hybrid contribution 1.721 -1.396 -0.186 2.224 sum -18.151 -15.777 -0.046 24.049 Atomic orbital electron populations 1.21804 0.92465 1.03013 1.03575 1.23041 0.95369 0.80156 1.02718 1.86467 1.24152 1.32400 1.84295 1.23094 0.80954 0.91653 0.73700 1.90806 1.59806 1.42179 1.42602 1.20974 0.94805 0.91795 1.01924 1.21909 1.03335 1.00945 0.93750 1.21909 1.03346 1.00957 0.93732 1.23572 0.89291 0.89783 0.73033 1.90571 1.73166 1.30479 1.31827 1.23949 0.96175 1.00912 1.09547 1.85212 0.98410 0.97245 1.95411 1.25643 0.85074 0.99750 1.21421 1.74222 1.27109 0.93988 1.16254 1.73967 0.97217 1.19591 1.35751 1.21716 0.95542 0.78615 0.93860 1.19406 0.91109 0.93631 1.49036 0.89876 1.27376 1.06246 0.93522 0.88788 1.70671 1.00176 1.39883 1.32253 0.82690 0.71202 0.71539 0.80372 1.24132 1.18579 1.20704 1.45811 1.04364 1.06911 1.64103 1.21562 0.88690 0.92007 1.02133 0.91411 0.91408 0.90222 0.91209 0.91209 0.89401 0.89766 0.91454 0.91462 0.89766 0.89403 0.85360 0.85380 0.90519 0.92045 0.91086 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.29 37.16 0.38 -0.37 16 2 C 0.06 0.48 6.19 37.16 0.23 0.71 16 3 O -0.36 -3.46 10.02 -39.26 -0.39 -3.85 16 4 C 0.47 5.57 6.55 36.00 0.24 5.81 16 5 O -0.47 -7.38 13.94 -26.86 -0.37 -7.76 16 6 C -0.09 -0.92 0.81 -156.81 -0.13 -1.05 16 7 C -0.14 -1.10 8.19 37.16 0.30 -0.80 16 8 C -0.14 -1.10 8.19 37.16 0.30 -0.80 16 9 C 0.37 4.95 5.98 -29.03 -0.17 4.78 16 10 O -0.39 -6.64 13.69 -18.51 -0.25 -6.89 16 11 C -0.16 -2.17 4.98 36.00 0.18 -1.99 16 12 S 0.01 0.18 20.93 -107.50 -2.25 -2.07 16 13 C 0.05 1.22 8.09 -87.28 -0.71 0.51 16 14 N -0.27 -6.66 11.62 30.89 0.36 -6.31 16 15 N -0.42 -11.23 7.52 31.26 0.23 -10.99 16 16 C 0.35 9.10 7.27 -154.81 -1.13 7.97 16 17 C -0.49 -13.05 9.50 -38.31 -0.36 -13.41 16 18 H 0.08 2.15 7.46 -52.49 -0.39 1.76 16 19 C 0.06 1.69 5.52 -17.29 -0.10 1.60 16 20 N -0.81 -21.42 13.65 55.56 0.76 -20.66 16 21 Si 1.11 27.50 25.90 -169.99 -4.40 23.10 16 22 H -0.31 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.26 -6.58 6.76 56.52 0.38 -6.20 16 24 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 25 N -0.51 -11.76 3.26 -123.18 -0.40 -12.17 16 26 C 0.10 1.80 10.89 59.85 0.65 2.45 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 31 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.09 0.60 7.29 -51.93 -0.38 0.22 16 33 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 37 H 0.09 0.60 7.28 -51.93 -0.38 0.22 16 38 H 0.13 1.66 7.38 -51.91 -0.38 1.28 16 39 H 0.13 1.66 7.38 -51.92 -0.38 1.28 16 40 H 0.28 7.17 8.72 -40.82 -0.36 6.81 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 1.12 7.85 -51.93 -0.41 0.71 16 43 H 0.08 1.38 7.48 -51.93 -0.39 0.99 16 LS Contribution 376.12 15.07 5.67 5.67 Total: -1.00 -34.68 376.12 -7.46 -42.14 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -6.11 Total: -5.64 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -0.30 Total: 5.42 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.95 Total: -50.12 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -1.02 Total: -18.50 kcal Atomic # 14 Polarization: 27.50 SS G_CDS: -4.40 Total: 23.10 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -2.25 Total: -2.07 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.68 -7.46 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281069726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.586 kcal (2) G-P(sol) polarization free energy of solvation -34.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds