Wall clock time and date at job start Tue Mar 31 2020 23:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46925 * 150.25838 * 3 2 1 5 5 C 1.36884 * 119.99593 * 274.94483 * 4 3 2 6 6 H 1.08001 * 120.00172 * 188.21249 * 5 4 3 7 7 C 1.39037 * 120.00118 * 8.21170 * 5 4 3 8 8 N 1.31373 * 120.00042 * 14.70060 * 7 5 4 9 9 Si 1.86799 * 120.00160 * 194.70477 * 7 5 4 10 10 H 1.48494 * 109.47481 * 59.99699 * 9 7 5 11 11 H 1.48503 * 109.47237 * 180.02562 * 9 7 5 12 12 H 1.48510 * 109.47003 * 299.99632 * 9 7 5 13 13 C 1.34772 * 120.00531 * 94.94572 * 4 3 2 14 14 O 1.21613 * 120.00051 * 184.96098 * 13 4 3 15 15 C 1.47590 * 120.00078 * 4.96173 * 13 4 3 16 16 C 1.40209 * 119.93491 * 130.01514 * 15 13 4 17 17 C 1.36361 * 120.48077 * 180.02562 * 16 15 13 18 18 C 1.39383 * 120.33940 * 0.04484 * 17 16 15 19 19 C 1.40765 * 119.96600 * 359.95790 * 18 17 16 20 20 C 1.39074 * 119.92992 * 310.03669 * 15 13 4 21 21 N 1.35528 * 120.61553 * 179.74835 * 19 18 17 22 22 C 1.30627 * 120.90137 * 0.60882 * 21 19 18 23 23 O 1.35487 * 119.97375 * 179.69856 * 22 21 19 24 24 C 1.47389 * 120.05241 * 359.39697 * 22 21 19 25 25 O 1.21710 * 120.37981 * 180.32258 * 24 22 21 26 26 N 1.35038 * 119.24067 * 0.30270 * 24 22 21 27 27 C 1.46498 * 120.40513 * 179.97438 * 26 24 22 28 28 C 1.53000 * 109.47024 * 270.01920 * 27 26 24 29 29 H 4.40637 * 5.51467 * 179.97438 * 4 1 2 30 30 H 1.08989 * 109.47737 * 30.25032 * 3 2 1 31 31 H 1.09002 * 109.47051 * 270.24900 * 3 2 1 32 32 H 0.96998 * 120.00287 * 180.02562 * 8 7 5 33 33 H 1.07997 * 119.75769 * 0.02562 * 16 15 13 34 34 H 1.08001 * 119.82498 * 180.02562 * 17 16 15 35 35 H 1.07996 * 120.19240 * 0.02562 * 20 15 13 36 36 H 0.96703 * 113.99909 * 359.69773 * 23 22 21 37 37 H 1.08999 * 109.46935 * 30.02241 * 27 26 24 38 38 H 1.09002 * 109.46814 * 150.01911 * 27 26 24 39 39 H 1.08994 * 109.46942 * 300.00359 * 28 27 26 40 40 H 1.09004 * 109.46612 * 60.00159 * 28 27 26 41 41 H 1.09000 * 109.46841 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2002 -0.6852 5 6 3.2655 1.2041 -2.0477 6 1 3.7474 2.0351 -2.5413 7 6 2.7789 0.1383 -2.7963 8 7 1.9494 -0.7226 -2.2515 9 14 3.3046 -0.0698 -4.5766 10 1 4.7795 -0.2293 -4.6419 11 1 2.6501 -1.2739 -5.1486 12 1 2.9014 1.1290 -5.3551 13 6 3.4527 2.2998 0.0258 14 8 3.7711 3.3237 -0.5480 15 6 3.4158 2.2613 1.5007 16 6 4.5140 2.7225 2.2404 17 6 4.4919 2.6916 3.6035 18 6 3.3762 2.1996 4.2786 19 6 2.2645 1.7323 3.5525 20 6 2.2918 1.7672 2.1540 21 7 1.1748 1.2465 4.1954 22 6 1.1259 1.2115 5.5003 23 8 0.0246 0.7276 6.1236 24 6 2.2705 1.6919 6.2949 25 8 2.2337 1.6566 7.5110 26 7 3.3607 2.1713 5.6583 27 6 4.5125 2.6559 6.4230 28 6 4.3425 4.1492 6.7097 29 1 -1.0502 -0.0004 0.0000 30 1 3.0098 -0.8868 -0.5176 31 1 3.0093 -0.0036 1.0277 32 1 1.6103 -1.4664 -2.7735 33 1 5.3836 3.1049 1.7268 34 1 5.3436 3.0499 4.1627 35 1 1.4457 1.4111 1.5852 36 1 -0.6729 0.4367 5.5203 37 1 4.5792 2.1104 7.3643 38 1 5.4238 2.4981 5.8462 39 1 4.2757 4.6946 5.7684 40 1 3.4311 4.3069 7.2865 41 1 5.1997 4.5098 7.2783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281151001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:13 Heat of formation + Delta-G solvation = 35.546139 kcal Electronic energy + Delta-G solvation = -29498.838961 eV Core-core repulsion = 25347.634918 eV Total energy + Delta-G solvation = -4151.204043 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.86083 -39.53729 -38.49334 -38.18497 -35.97073 -35.58983 -35.15943 -32.32516 -31.54718 -31.38948 -30.21838 -29.47294 -26.57703 -25.65656 -25.21448 -23.97316 -23.49035 -21.67827 -20.45691 -19.79868 -18.59067 -18.05486 -17.79338 -16.83296 -16.57778 -16.44153 -16.10985 -15.66073 -15.08844 -14.88011 -14.75472 -14.34399 -14.27300 -14.02332 -13.91924 -13.49193 -13.41361 -13.39502 -12.91233 -12.63991 -12.42233 -12.30939 -12.03095 -11.73619 -11.57236 -11.48033 -11.19892 -11.06668 -11.04233 -10.65379 -10.57919 -10.32063 -9.66376 -9.49377 -9.33744 -8.86278 -8.69047 -8.41411 -8.08820 -7.84883 -6.42401 -3.96380 0.33540 0.93340 1.77917 1.89063 2.72726 3.10556 3.13278 3.17679 3.20352 3.56377 3.77917 3.88516 3.97626 4.08371 4.12650 4.37735 4.54996 4.61002 4.74589 4.79733 4.86447 4.98006 5.00362 5.24521 5.30932 5.40851 5.46150 5.49745 5.60137 5.73783 5.82458 5.90209 6.09512 6.21147 6.26650 6.54710 6.57867 6.72329 6.82327 6.97482 7.05276 7.41386 7.43133 7.62684 7.84836 8.27858 8.82428 8.97390 9.18930 9.73004 10.51137 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.003398 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.040219 B = 8236.957648 C = 9461.095039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.100 4.100 3 C 0.225 3.775 4 N -0.423 5.423 5 C -0.307 4.307 6 H 0.110 0.890 7 C 0.030 3.970 8 N -0.862 5.862 9 Si 0.932 3.068 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.474 3.526 14 O -0.581 6.581 15 C -0.104 4.104 16 C -0.033 4.033 17 C -0.155 4.155 18 C 0.121 3.879 19 C 0.060 3.940 20 C -0.033 4.033 21 N -0.473 5.473 22 C 0.301 3.699 23 O -0.439 6.439 24 C 0.524 3.476 25 O -0.503 6.503 26 N -0.502 5.502 27 C 0.096 3.904 28 C -0.171 4.171 29 H 0.199 0.801 30 H 0.119 0.881 31 H 0.062 0.938 32 H 0.272 0.728 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.156 0.844 36 H 0.414 0.586 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 1.388 14.215 14.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.102 4.102 3 C 0.102 3.898 4 N -0.139 5.139 5 C -0.435 4.435 6 H 0.128 0.872 7 C -0.174 4.174 8 N -0.500 5.500 9 Si 0.758 3.242 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.263 3.737 14 O -0.466 6.466 15 C -0.110 4.110 16 C -0.053 4.053 17 C -0.176 4.176 18 C 0.020 3.980 19 C -0.049 4.049 20 C -0.053 4.053 21 N -0.208 5.208 22 C 0.083 3.917 23 O -0.234 6.234 24 C 0.312 3.688 25 O -0.376 6.376 26 N -0.223 5.223 27 C -0.024 4.024 28 C -0.229 4.229 29 H 0.216 0.784 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.174 0.826 36 H 0.270 0.730 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.605 1.531 14.613 14.922 hybrid contribution -0.116 -0.238 -0.978 1.013 sum 2.489 1.293 13.635 13.920 Atomic orbital electron populations 1.24227 0.95321 1.02380 1.06275 1.22804 0.94036 0.98171 0.95159 1.18625 0.84702 0.91411 0.95086 1.43702 1.53616 1.09702 1.06867 1.19781 1.36460 1.06770 0.80456 0.87232 1.25365 0.95081 0.96207 1.00721 1.69990 1.27440 1.15197 1.37369 0.85894 0.78969 0.77929 0.81366 1.19712 1.20856 1.19731 1.17638 0.86613 0.84281 0.85164 1.90647 1.54795 1.30437 1.70728 1.20200 0.94529 1.00555 0.95668 1.20905 0.97790 0.94240 0.92390 1.20378 0.97219 1.05390 0.94616 1.18756 0.96775 1.00637 0.81823 1.17802 0.88590 1.04869 0.93627 1.21672 0.98713 0.94275 0.90652 1.68087 1.26975 1.18032 1.07681 1.22357 0.88430 0.93968 0.86972 1.85032 1.24939 1.76621 1.36811 1.18303 0.82578 0.80153 0.87803 1.90887 1.80030 1.54432 1.12263 1.45374 1.16537 1.55268 1.05157 1.21928 0.86801 0.96332 0.97380 1.22147 1.03353 0.94456 1.02896 0.78436 0.86366 0.91989 0.91668 0.84198 0.84521 0.82635 0.72953 0.88217 0.88345 0.91563 0.91789 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.31 19.04 29.55 0.56 -4.75 16 2 C -0.10 -2.17 8.70 -37.12 -0.32 -2.49 16 3 C 0.22 4.83 4.76 -6.83 -0.03 4.80 16 4 N -0.42 -10.20 2.59 -119.10 -0.31 -10.51 16 5 C -0.31 -8.01 9.46 -15.00 -0.14 -8.15 16 6 H 0.11 2.99 7.26 -52.49 -0.38 2.61 16 7 C 0.03 0.75 5.17 -17.45 -0.09 0.66 16 8 N -0.86 -21.14 8.38 55.50 0.47 -20.68 16 9 Si 0.93 19.54 29.58 -169.99 -5.03 14.51 16 10 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 13 C 0.47 11.04 7.15 -12.45 -0.09 10.95 16 14 O -0.58 -15.40 16.65 5.27 0.09 -15.31 16 15 C -0.10 -1.93 4.89 -105.03 -0.51 -2.44 16 16 C -0.03 -0.50 9.65 -39.52 -0.38 -0.88 16 17 C -0.16 -1.89 9.13 -39.83 -0.36 -2.25 16 18 C 0.12 1.66 6.53 -83.70 -0.55 1.11 16 19 C 0.06 0.95 6.57 -84.65 -0.56 0.40 16 20 C -0.03 -0.59 7.51 -38.64 -0.29 -0.88 16 21 N -0.47 -7.12 10.28 -9.22 -0.09 -7.21 16 22 C 0.30 4.22 8.10 -14.34 -0.12 4.10 16 23 O -0.44 -5.18 13.44 -31.81 -0.43 -5.61 16 24 C 0.52 7.57 7.66 -12.42 -0.10 7.47 16 25 O -0.50 -8.15 16.64 -8.48 -0.14 -8.29 16 26 N -0.50 -6.25 2.66 -114.40 -0.30 -6.55 16 27 C 0.10 0.85 5.61 -4.04 -0.02 0.83 16 28 C -0.17 -1.36 10.24 37.16 0.38 -0.98 16 29 H 0.20 3.28 7.80 -54.08 -0.42 2.86 16 30 H 0.12 2.68 6.29 -51.93 -0.33 2.36 16 31 H 0.06 1.18 5.53 -51.93 -0.29 0.89 16 32 H 0.27 6.43 8.31 -40.82 -0.34 6.10 16 33 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.14 1.18 6.13 -52.49 -0.32 0.86 16 35 H 0.16 2.98 4.71 -52.49 -0.25 2.74 16 36 H 0.41 3.01 8.97 45.56 0.41 3.42 16 37 H 0.10 0.89 7.47 -51.93 -0.39 0.50 16 38 H 0.10 0.65 6.20 -51.93 -0.32 0.33 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -32.24 352.87 -6.16 -38.41 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -3.11 Total: 8.42 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -2.62 Total: 7.50 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -0.24 Total: -44.95 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.48 Total: -29.21 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.24 -6.16 -38.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281151001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.954 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds