Wall clock time and date at job start Tue Mar 31 2020 23:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47060 * 206.08557 * 3 2 1 5 5 C 1.36764 * 120.00437 * 83.21821 * 4 3 2 6 6 H 1.07995 * 120.00425 * 169.27470 * 5 4 3 7 7 C 1.39125 * 119.99431 * 349.28272 * 5 4 3 8 8 N 1.31315 * 120.00425 * 3.54702 * 7 5 4 9 9 Si 1.86801 * 119.99958 * 183.54726 * 7 5 4 10 10 H 1.48504 * 109.46805 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47385 * 119.99471 * 9 7 5 12 12 H 1.48501 * 109.47417 * 240.00035 * 9 7 5 13 13 C 1.34779 * 120.00130 * 263.21591 * 4 3 2 14 14 O 1.21574 * 120.00438 * 182.39203 * 13 4 3 15 15 C 1.47897 * 119.99638 * 2.39629 * 13 4 3 16 16 C 1.40136 * 119.76040 * 222.98485 * 15 13 4 17 17 C 1.36504 * 120.58220 * 179.97438 * 16 15 13 18 18 C 1.39468 * 119.87762 * 359.97438 * 17 16 15 19 19 C 1.41312 * 120.26021 * 0.02562 * 18 17 16 20 20 C 1.39007 * 119.76447 * 42.99294 * 15 13 4 21 21 N 1.35515 * 119.11740 * 180.02562 * 19 18 17 22 22 C 1.30660 * 121.57583 * 359.97438 * 21 19 18 23 23 O 1.35007 * 118.42354 * 179.97438 * 22 21 19 24 24 N 1.36261 * 123.15675 * 0.02562 * 22 21 19 25 25 C 1.46497 * 119.71029 * 179.97438 * 24 22 21 26 26 C 1.53005 * 109.47162 * 90.00216 * 25 24 22 27 27 C 1.35306 * 120.57786 * 0.25286 * 24 22 21 28 28 O 1.21704 * 121.22868 * 179.71993 * 27 24 22 29 29 H 4.40638 * 5.51470 * 179.97438 * 4 1 2 30 30 H 1.09008 * 109.46903 * 86.08657 * 3 2 1 31 31 H 1.09000 * 109.47390 * 326.09036 * 3 2 1 32 32 H 0.96997 * 119.99882 * 180.02562 * 8 7 5 33 33 H 1.07993 * 119.70818 * 0.02562 * 16 15 13 34 34 H 1.07998 * 120.05914 * 179.97438 * 17 16 15 35 35 H 1.07996 * 120.28087 * 0.02562 * 20 15 13 36 36 H 0.96708 * 113.99693 * 0.02562 * 23 22 21 37 37 H 1.09004 * 109.47324 * 209.99659 * 25 24 22 38 38 H 1.08997 * 109.47557 * 330.00195 * 25 24 22 39 39 H 1.09011 * 109.46949 * 59.99812 * 26 25 24 40 40 H 1.08995 * 109.47298 * 179.97438 * 26 25 24 41 41 H 1.08997 * 109.46983 * 300.00401 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2414 0.6073 5 6 3.2298 1.3453 1.9676 6 1 3.7467 2.1839 2.4100 7 6 2.6617 0.3703 2.7815 8 7 2.0942 -0.6848 2.2439 9 14 2.7061 0.5623 4.6391 10 1 3.3979 1.8288 4.9894 11 1 1.3185 0.5933 5.1669 12 1 3.4380 -0.5828 5.2377 13 6 3.4879 2.2805 -0.1745 14 8 3.9336 3.2944 0.3270 15 6 3.3342 2.1875 -1.6425 16 6 4.3533 2.6608 -2.4800 17 6 4.2292 2.5828 -3.8371 18 6 3.0799 2.0273 -4.3989 19 6 2.0429 1.5453 -3.5687 20 6 2.1800 1.6313 -2.1816 21 7 0.9366 1.0096 -4.1392 22 6 0.8067 0.9290 -5.4369 23 8 -0.3222 0.3830 -5.9370 24 7 1.7562 1.3688 -6.3096 25 6 1.5321 1.2406 -7.7516 26 6 0.8335 2.4981 -8.2729 27 6 2.9068 1.9176 -5.8559 28 8 3.7650 2.3096 -6.6247 29 1 -1.0502 -0.0002 -0.0003 30 1 3.0094 -0.0693 -1.0254 31 1 3.0098 -0.8520 0.5733 32 1 1.6978 -1.3643 2.8113 33 1 5.2449 3.0903 -2.0478 34 1 5.0196 2.9505 -4.4746 35 1 1.3964 1.2681 -1.5333 36 1 -0.9512 0.0928 -5.2622 37 1 2.4894 1.1202 -8.2589 38 1 0.9058 0.3700 -7.9461 39 1 1.4599 3.3688 -8.0785 40 1 0.6671 2.4029 -9.3459 41 1 -0.1237 2.6186 -7.7657 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281480722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:44 Heat of formation + Delta-G solvation = 32.740226 kcal Electronic energy + Delta-G solvation = -29441.985802 eV Core-core repulsion = 25290.660086 eV Total energy + Delta-G solvation = -4151.325716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.81070 -39.54623 -38.87405 -37.79773 -36.26771 -35.45319 -34.72559 -32.46776 -31.44943 -31.40332 -30.44679 -29.40024 -26.66207 -25.78040 -24.60057 -24.36964 -22.85438 -21.99724 -20.42439 -19.49430 -18.60404 -18.05998 -17.85887 -16.84008 -16.60758 -16.44675 -16.13776 -15.62824 -14.99765 -14.79314 -14.45850 -14.34157 -14.25731 -14.16247 -13.99853 -13.47762 -13.40852 -13.24987 -12.74443 -12.58877 -12.46985 -12.27845 -11.99604 -11.57463 -11.46417 -11.31160 -11.15484 -11.09114 -10.57009 -10.46003 -10.40960 -10.06942 -10.01604 -9.66205 -9.30439 -8.87470 -8.78707 -8.52425 -8.10327 -7.83471 -6.39180 -3.98742 0.60480 0.94330 1.79204 2.22973 2.69276 3.08905 3.18462 3.24903 3.27719 3.65511 3.75013 3.99997 4.07074 4.16246 4.19712 4.27541 4.64224 4.76412 4.79440 4.91126 4.99502 4.99938 5.25037 5.36341 5.45376 5.49214 5.53995 5.63621 5.68647 5.79553 5.80751 6.10972 6.16906 6.29530 6.35139 6.55977 6.70303 6.78043 6.94945 7.05896 7.09970 7.41581 7.56153 7.83039 7.85663 8.29803 8.76009 8.97196 9.18060 9.72982 10.49422 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020078 B = 0.003252 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.242795 B = 8608.479718 C = 9698.402609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.098 4.098 3 C 0.213 3.787 4 N -0.422 5.422 5 C -0.298 4.298 6 H 0.111 0.889 7 C 0.029 3.971 8 N -0.868 5.868 9 Si 0.936 3.064 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.468 3.532 14 O -0.579 6.579 15 C -0.040 4.040 16 C -0.105 4.105 17 C -0.044 4.044 18 C -0.216 4.216 19 C 0.179 3.821 20 C -0.107 4.107 21 N -0.565 5.565 22 C 0.574 3.426 23 O -0.460 6.460 24 N -0.533 5.533 25 C 0.092 3.908 26 C -0.166 4.166 27 C 0.567 3.433 28 O -0.508 6.508 29 H 0.199 0.801 30 H 0.060 0.940 31 H 0.140 0.860 32 H 0.271 0.729 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.434 0.566 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 -2.065 -16.808 17.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.100 4.100 3 C 0.091 3.909 4 N -0.138 5.138 5 C -0.425 4.425 6 H 0.129 0.871 7 C -0.174 4.174 8 N -0.507 5.507 9 Si 0.762 3.238 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.205 1.205 13 C 0.257 3.743 14 O -0.465 6.465 15 C -0.045 4.045 16 C -0.124 4.124 17 C -0.063 4.063 18 C -0.222 4.222 19 C 0.070 3.930 20 C -0.127 4.127 21 N -0.306 5.306 22 C 0.270 3.730 23 O -0.257 6.257 24 N -0.266 5.266 25 C -0.030 4.030 26 C -0.224 4.224 27 C 0.362 3.638 28 O -0.382 6.382 29 H 0.217 0.783 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.082 0.918 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.176 0.824 36 H 0.294 0.706 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.648 -1.685 -16.903 17.611 hybrid contribution -0.391 -0.082 0.820 0.912 sum -5.039 -1.766 -16.082 16.946 Atomic orbital electron populations 1.24273 0.95367 1.02670 1.06437 1.22975 0.94219 0.97825 0.94992 1.19046 0.84490 0.90900 0.96476 1.43703 1.53041 1.10577 1.06430 1.19941 1.33317 1.09618 0.79627 0.87082 1.25407 0.95479 0.95196 1.01289 1.69905 1.36057 1.09501 1.35235 0.85696 0.78164 0.78662 0.81285 1.19055 1.20519 1.20518 1.17832 0.86725 0.84734 0.84990 1.90638 1.51161 1.30351 1.74314 1.20453 0.93734 0.94779 0.95536 1.20927 0.99380 0.99987 0.92153 1.20543 0.95460 0.95476 0.94821 1.20401 0.99552 1.11293 0.91003 1.18194 0.87555 0.93627 0.93582 1.21699 0.99042 0.99634 0.92343 1.68597 1.26958 1.30111 1.04975 1.19804 0.83111 0.86225 0.83861 1.84611 1.26766 1.74565 1.39792 1.46146 1.16519 1.54925 1.09001 1.21873 1.03181 1.00257 0.77644 1.22096 1.00975 0.97539 1.01804 1.18340 0.79689 0.76758 0.89021 1.90840 1.40703 1.47879 1.58783 0.78343 0.92234 0.84289 0.91762 0.84420 0.84517 0.82371 0.70608 0.88415 0.88407 0.91927 0.90544 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.36 18.88 29.55 0.56 -4.80 16 2 C -0.10 -2.14 8.68 -37.12 -0.32 -2.47 16 3 C 0.21 4.73 4.75 -6.83 -0.03 4.69 16 4 N -0.42 -10.47 2.60 -119.00 -0.31 -10.78 16 5 C -0.30 -7.87 9.48 -15.02 -0.14 -8.01 16 6 H 0.11 3.08 7.20 -52.49 -0.38 2.70 16 7 C 0.03 0.73 5.38 -17.44 -0.09 0.64 16 8 N -0.87 -21.21 8.07 55.50 0.45 -20.76 16 9 Si 0.94 19.86 29.56 -169.99 -5.02 14.84 16 10 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 13 C 0.47 11.41 7.22 -12.30 -0.09 11.32 16 14 O -0.58 -15.86 16.55 5.30 0.09 -15.78 16 15 C -0.04 -0.81 4.97 -104.95 -0.52 -1.33 16 16 C -0.11 -1.85 9.57 -39.50 -0.38 -2.22 16 17 C -0.04 -0.69 9.60 -39.75 -0.38 -1.07 16 18 C -0.22 -3.52 5.90 -104.66 -0.62 -4.14 16 19 C 0.18 3.03 6.62 -84.54 -0.56 2.47 16 20 C -0.11 -2.03 7.55 -38.77 -0.29 -2.32 16 21 N -0.57 -8.23 10.22 -12.24 -0.13 -8.36 16 22 C 0.57 6.77 8.55 -89.12 -0.76 6.01 16 23 O -0.46 -3.55 12.24 -16.73 -0.20 -3.76 16 24 N -0.53 -6.51 2.61 -119.09 -0.31 -6.82 16 25 C 0.09 0.82 5.84 -4.04 -0.02 0.80 16 26 C -0.17 -1.32 10.24 37.16 0.38 -0.93 16 27 C 0.57 8.52 7.66 -12.41 -0.10 8.43 16 28 O -0.51 -8.31 16.28 5.18 0.08 -8.23 16 29 H 0.20 3.21 7.80 -54.08 -0.42 2.79 16 30 H 0.06 1.20 5.65 -51.92 -0.29 0.90 16 31 H 0.14 3.26 5.96 -51.93 -0.31 2.95 16 32 H 0.27 6.34 8.31 -40.82 -0.34 6.01 16 33 H 0.14 2.30 8.06 -52.49 -0.42 1.87 16 34 H 0.14 1.90 7.80 -52.49 -0.41 1.49 16 35 H 0.16 3.19 4.00 -52.49 -0.21 2.98 16 36 H 0.43 1.81 8.92 45.56 0.41 2.22 16 37 H 0.10 0.89 7.45 -51.93 -0.39 0.50 16 38 H 0.10 0.68 7.30 -51.93 -0.38 0.30 16 39 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 353.23 15.07 5.32 5.32 Total: -1.00 -31.93 353.23 -6.61 -38.54 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -3.21 Total: 8.72 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -3.37 Total: 7.06 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.30 Total: -46.72 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.03 Total: -27.76 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.93 -6.61 -38.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281480722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.280 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds