Wall clock time and date at job start Wed Apr 1 2020 00:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46511 * 109.46522 * 161.10116 * 3 2 1 5 5 C 1.36936 * 119.99471 * 264.23033 * 4 3 2 6 6 H 1.08005 * 119.99173 * 201.17950 * 5 4 3 7 7 C 1.38809 * 120.00505 * 21.18631 * 5 4 3 8 8 N 1.31622 * 119.99938 * 10.84426 * 7 5 4 9 9 Si 1.86797 * 120.00138 * 190.84692 * 7 5 4 10 10 H 1.48501 * 109.46887 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46936 * 119.99840 * 9 7 5 12 12 H 1.48494 * 109.47145 * 239.99573 * 9 7 5 13 13 C 1.46496 * 120.00132 * 84.23607 * 4 3 2 14 14 C 1.50693 * 109.47636 * 89.99733 * 13 4 3 15 15 O 1.21283 * 119.99851 * 0.02562 * 14 13 4 16 16 N 1.34777 * 120.00564 * 180.02562 * 14 13 4 17 17 C 1.39439 * 120.00439 * 184.84923 * 16 14 13 18 18 C 1.38975 * 119.85290 * 34.57823 * 17 16 14 19 19 C 1.38269 * 120.40099 * 179.97438 * 18 17 16 20 20 C 1.38789 * 119.83044 * 0.25278 * 19 18 17 21 21 C 1.41098 * 119.92747 * 359.47483 * 20 19 18 22 22 C 1.38319 * 119.89249 * 0.52565 * 21 20 19 23 23 C 1.47859 * 105.85065 * 180.34006 * 21 20 19 24 24 O 1.21445 * 125.73715 * 180.22068 * 23 21 20 25 25 N 1.34533 * 108.51885 * 359.48730 * 23 21 20 26 26 C 1.46491 * 124.45448 * 180.02562 * 25 23 21 27 27 C 1.34513 * 111.09469 * 0.69126 * 25 23 21 28 28 O 1.21490 * 125.66988 * 179.42714 * 27 25 23 29 29 H 4.40645 * 5.51483 * 180.02562 * 4 1 2 30 30 H 1.08994 * 109.47521 * 41.10204 * 3 2 1 31 31 H 1.09000 * 109.47544 * 281.09539 * 3 2 1 32 32 H 0.97001 * 119.99891 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.46936 * 329.99167 * 13 4 3 34 34 H 1.08995 * 109.46977 * 210.00116 * 13 4 3 35 35 H 0.97006 * 119.99632 * 4.85175 * 16 14 13 36 36 H 1.07998 * 119.79621 * 359.97267 * 18 17 16 37 37 H 1.08004 * 120.08536 * 179.97438 * 19 18 17 38 38 H 1.08001 * 120.16718 * 179.77457 * 22 21 20 39 39 H 1.08999 * 109.47655 * 180.66600 * 26 25 23 40 40 H 1.09002 * 109.46970 * 300.67206 * 26 25 23 41 41 H 1.09001 * 109.47218 * 60.66309 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3078 -0.4474 5 6 3.4741 1.4988 -1.7600 6 1 4.1354 2.3075 -2.0340 7 6 2.9692 0.6533 -2.7382 8 7 2.0043 -0.1921 -2.4434 9 14 3.6591 0.7150 -4.4730 10 1 4.7290 1.7424 -4.5439 11 1 4.2233 -0.6119 -4.8288 12 1 2.5740 1.0628 -5.4251 13 6 3.2571 2.4103 0.5093 14 6 4.6323 2.3895 1.1251 15 8 5.4310 1.5379 0.7967 16 7 4.9749 3.3173 2.0407 17 6 6.2778 3.3607 2.5357 18 6 7.3446 3.0413 1.7042 19 6 8.6412 3.0811 2.1830 20 6 8.8789 3.4370 3.5033 21 6 7.7987 3.7674 4.3488 22 6 6.5046 3.7252 3.8623 23 6 8.3982 4.0992 5.6590 24 8 7.7876 4.4319 6.6547 25 7 9.7327 3.9548 5.5672 26 6 10.6698 4.1945 6.6673 27 6 10.0945 3.5753 4.3285 28 8 11.2327 3.3788 3.9518 29 1 -1.0503 -0.0003 0.0003 30 1 3.0097 -0.7735 -0.6755 31 1 3.0095 -0.1969 1.0084 32 1 1.6518 -0.7832 -3.1269 33 1 2.5068 2.2978 1.2920 34 1 3.1044 3.3580 -0.0068 35 1 4.3150 3.9548 2.3555 36 1 7.1598 2.7604 0.6780 37 1 9.4664 2.8316 1.5326 38 1 5.6742 3.9738 4.5066 39 1 11.6884 4.0163 6.3224 40 1 10.5762 5.2264 7.0060 41 1 10.4422 3.5194 7.4922 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281497093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:44 Heat of formation + Delta-G solvation = 50.249001 kcal Electronic energy + Delta-G solvation = -28097.445144 eV Core-core repulsion = 23946.878665 eV Total energy + Delta-G solvation = -4150.566479 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.50440 -40.24705 -38.86281 -38.15824 -36.17811 -35.83034 -34.62739 -32.01665 -31.62336 -31.44788 -30.70169 -28.05370 -26.98213 -26.04330 -25.26389 -23.32193 -22.99358 -21.74680 -20.52258 -19.81865 -18.28028 -17.61869 -17.51470 -17.42073 -17.05036 -16.49538 -16.27023 -15.74061 -15.24771 -15.16672 -14.93029 -14.34894 -14.24475 -14.23163 -13.87557 -13.78720 -13.51241 -13.45381 -13.20313 -12.98137 -12.77013 -12.64871 -12.06266 -11.54948 -11.48393 -11.05832 -10.86043 -10.80790 -10.67850 -10.46413 -10.31802 -10.14164 -10.13140 -9.72513 -9.39304 -9.03687 -8.94727 -8.46602 -8.37839 -7.14491 -5.87745 -3.38466 -0.16049 0.75516 1.77809 2.04108 2.66546 2.93569 2.95250 3.31932 3.39452 3.40972 3.48516 3.54415 4.07014 4.07577 4.31682 4.37050 4.44821 4.72763 4.78439 4.89774 4.91073 5.02388 5.14124 5.22400 5.26773 5.40178 5.46592 5.50540 5.59371 5.77599 5.82096 5.88537 5.98953 6.06809 6.19778 6.33866 6.65032 6.69048 6.92484 7.23110 7.36919 7.38219 7.43876 7.63311 8.14201 8.45225 8.97907 9.11264 9.59822 10.03224 11.14654 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019079 B = 0.002419 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.246511 B =11572.354329 C =12637.611035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.091 4.091 3 C 0.269 3.731 4 N -0.560 5.560 5 C -0.262 4.262 6 H 0.074 0.926 7 C 0.007 3.993 8 N -0.894 5.894 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.290 1.290 13 C 0.134 3.866 14 C 0.476 3.524 15 O -0.493 6.493 16 N -0.685 5.685 17 C 0.193 3.807 18 C -0.106 4.106 19 C -0.015 4.015 20 C -0.177 4.177 21 C -0.122 4.122 22 C -0.079 4.079 23 C 0.580 3.420 24 O -0.466 6.466 25 N -0.583 5.583 26 C 0.080 3.920 27 C 0.580 3.420 28 O -0.470 6.470 29 H 0.191 0.809 30 H 0.106 0.894 31 H 0.033 0.967 32 H 0.256 0.744 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.412 0.588 36 H 0.156 0.844 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.906 9.799 14.803 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 C -0.094 4.094 3 C 0.144 3.856 4 N -0.276 5.276 5 C -0.391 4.391 6 H 0.091 0.909 7 C -0.192 4.192 8 N -0.537 5.537 9 Si 0.741 3.259 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.217 1.217 13 C 0.000 4.000 14 C 0.262 3.738 15 O -0.363 6.363 16 N -0.332 5.332 17 C 0.095 3.905 18 C -0.127 4.127 19 C -0.034 4.034 20 C -0.182 4.182 21 C -0.127 4.127 22 C -0.100 4.100 23 C 0.369 3.631 24 O -0.338 6.338 25 N -0.325 5.325 26 C -0.060 4.060 27 C 0.371 3.629 28 O -0.342 6.342 29 H 0.208 0.792 30 H 0.124 0.876 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.249 0.751 36 H 0.173 0.827 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.671 9.060 14.707 20.304 hybrid contribution -0.234 0.309 -0.748 0.843 sum 10.437 9.370 13.959 19.788 Atomic orbital electron populations 1.24191 0.95325 1.04077 1.08604 1.24168 0.95132 0.96682 0.93418 1.17810 0.82618 0.89012 0.96124 1.43628 1.73249 1.05763 1.05003 1.19182 1.23296 1.15004 0.81624 0.90856 1.25014 0.96601 0.99246 0.98317 1.70018 1.25831 1.24955 1.32859 0.86093 0.78223 0.77626 0.83977 1.20253 1.21417 1.21681 1.20704 0.89894 0.95008 0.94352 1.24039 0.93592 0.79161 0.77007 1.90680 1.52393 1.35233 1.58020 1.44281 1.09219 1.35719 1.44027 1.17985 0.86208 0.95300 0.91006 1.21518 0.90290 0.99372 1.01505 1.20635 0.97210 0.93174 0.92427 1.20318 0.93026 1.08801 0.96027 1.20116 0.94428 1.04089 0.94023 1.20444 0.95520 1.00850 0.93232 1.18351 0.81375 0.75485 0.87890 1.90801 1.65951 1.42115 1.34907 1.46396 1.09122 1.63526 1.13497 1.21886 0.93143 1.02978 0.87983 1.18343 0.88624 0.74670 0.81300 1.90806 1.22234 1.45843 1.75344 0.79200 0.87636 0.94881 0.93305 0.90610 0.89325 0.75145 0.82671 0.83849 0.83829 0.88622 0.90342 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.52 19.25 29.55 0.57 -5.96 16 2 C -0.09 -2.11 11.50 -37.12 -0.43 -2.54 16 3 C 0.27 6.19 5.41 -6.82 -0.04 6.16 16 4 N -0.56 -12.69 1.98 -177.95 -0.35 -13.05 16 5 C -0.26 -6.64 9.69 -15.06 -0.15 -6.79 16 6 H 0.07 1.83 7.85 -52.48 -0.41 1.42 16 7 C 0.01 0.19 5.10 -17.43 -0.09 0.10 16 8 N -0.89 -24.33 9.02 55.49 0.50 -23.83 16 9 Si 0.91 21.00 29.57 -169.99 -5.03 15.97 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.13 2.26 6.16 -5.20 -0.03 2.23 16 14 C 0.48 7.53 7.62 -10.99 -0.08 7.44 16 15 O -0.49 -9.80 14.15 5.55 0.08 -9.72 16 16 N -0.69 -7.71 5.31 -9.82 -0.05 -7.77 16 17 C 0.19 2.24 6.26 -83.68 -0.52 1.71 16 18 C -0.11 -1.32 8.63 -39.30 -0.34 -1.66 16 19 C -0.01 -0.17 10.08 -39.37 -0.40 -0.56 16 20 C -0.18 -2.03 6.40 -104.81 -0.67 -2.70 16 21 C -0.12 -1.36 6.40 -104.85 -0.67 -2.03 16 22 C -0.08 -0.81 10.01 -39.10 -0.39 -1.20 16 23 C 0.58 6.61 8.03 -12.43 -0.10 6.51 16 24 O -0.47 -6.14 17.80 5.41 0.10 -6.05 16 25 N -0.58 -6.01 3.02 -125.10 -0.38 -6.39 16 26 C 0.08 0.56 10.87 59.84 0.65 1.22 16 27 C 0.58 6.80 8.01 -12.57 -0.10 6.70 16 28 O -0.47 -6.43 17.43 5.37 0.09 -6.33 16 29 H 0.19 3.40 7.80 -54.08 -0.42 2.98 16 30 H 0.11 2.73 6.38 -51.93 -0.33 2.40 16 31 H 0.03 0.69 8.11 -51.93 -0.42 0.27 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.08 1.13 8.07 -51.93 -0.42 0.71 16 34 H 0.09 1.38 8.04 -51.93 -0.42 0.96 16 35 H 0.41 3.11 8.82 -40.82 -0.36 2.75 16 36 H 0.16 2.21 6.45 -52.49 -0.34 1.87 16 37 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.10 0.60 7.58 -51.93 -0.39 0.21 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -33.03 368.84 -6.61 -39.64 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -4.34 Total: 3.33 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -2.79 Total: 8.63 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.28 Total: -51.03 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: 0.27 Total: -22.10 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.03 -6.61 -39.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281497093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.888 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds