Wall clock time and date at job start Tue Mar 31 2020 23:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47644 * 2 1 4 4 C 1.47203 * 109.46606 * 240.00677 * 2 1 3 5 5 N 2.60805 * 109.46614 * 240.00634 * 2 1 3 6 6 C 1.52992 * 109.47645 * 120.00624 * 2 1 3 7 7 N 1.46506 * 109.47084 * 294.45343 * 6 2 1 8 8 C 1.46497 * 119.99848 * 282.37437 * 7 6 2 9 9 S 1.65602 * 120.00070 * 102.37547 * 7 6 2 10 10 O 1.42097 * 106.40187 * 209.12714 * 9 7 6 11 11 O 1.42111 * 106.39994 * 342.04404 * 9 7 6 12 12 N 1.65599 * 107.21962 * 95.57912 * 9 7 6 13 13 C 1.46493 * 120.00438 * 275.50929 * 12 9 7 14 14 C 1.50703 * 109.46886 * 95.93806 * 13 12 9 15 15 H 1.07997 * 120.00517 * 4.93348 * 14 13 12 16 16 C 1.37882 * 119.99855 * 184.92627 * 14 13 12 17 17 N 1.31509 * 120.00216 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99706 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47009 * 60.00420 * 18 16 14 20 20 H 1.48500 * 109.46630 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47009 * 300.00215 * 18 16 14 22 22 C 1.46505 * 119.99540 * 95.50687 * 12 9 7 23 23 C 1.50701 * 109.46725 * 95.00147 * 22 12 9 24 24 C 1.34517 * 125.78866 * 89.71603 * 23 22 12 25 25 C 1.41383 * 106.84025 * 179.88998 * 24 23 22 26 26 C 1.34516 * 106.84254 * 0.37084 * 25 24 23 27 27 O 1.34306 * 108.41989 * 359.77291 * 26 25 24 28 28 H 1.09000 * 109.47390 * 176.47886 * 1 2 3 29 29 H 1.09005 * 109.46723 * 296.46987 * 1 2 3 30 30 H 1.08997 * 109.47892 * 56.46892 * 1 2 3 31 31 H 1.09003 * 109.47289 * 54.45316 * 6 2 1 32 32 H 1.08997 * 109.47699 * 174.45079 * 6 2 1 33 33 H 1.09000 * 109.46979 * 85.21626 * 8 7 6 34 34 H 1.08996 * 109.47086 * 205.21390 * 8 7 6 35 35 H 1.08999 * 109.47174 * 325.21550 * 8 7 6 36 36 H 1.08998 * 109.47466 * 215.93799 * 13 12 9 37 37 H 1.09002 * 109.47267 * 335.94584 * 13 12 9 38 38 H 0.97002 * 120.00229 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.47090 * 215.00058 * 22 12 9 40 40 H 1.09001 * 109.47218 * 335.00285 * 22 12 9 41 41 H 1.08000 * 126.57698 * 0.02562 * 24 23 22 42 42 H 1.07997 * 126.58004 * 180.16756 * 25 24 23 43 43 H 1.07997 * 125.79137 * 179.75229 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0205 -0.6938 -1.2020 5 7 2.3991 -1.2292 -2.1297 6 6 2.0401 -0.7213 1.2491 7 7 1.6638 0.0419 2.4417 8 6 2.4184 1.2419 2.8115 9 16 0.3856 -0.4518 3.3716 10 8 -0.1566 0.7208 3.9633 11 8 -0.3772 -1.3399 2.5660 12 7 1.0031 -1.3590 4.6117 13 6 1.2772 -2.7840 4.4110 14 6 2.7299 -2.9709 4.0563 15 1 3.4012 -2.1249 4.0651 16 6 3.2021 -4.2221 3.7207 17 7 2.3848 -5.2523 3.7096 18 14 5.0030 -4.4539 3.2817 19 1 5.8492 -4.0479 4.4325 20 1 5.2544 -5.8820 2.9612 21 1 5.3367 -3.6161 2.1020 22 6 1.2753 -0.7364 5.9097 23 6 0.0953 -0.9442 6.8237 24 6 -0.0835 -1.9886 7.6524 25 6 -1.3133 -1.7780 8.3174 26 6 -1.8164 -0.6216 7.8494 27 8 -0.9590 -0.1210 6.9449 28 1 -0.3634 -1.0257 -0.0631 29 1 -0.3633 0.4581 0.9200 30 1 -0.3635 0.5676 -0.8566 31 1 1.5980 -1.7164 1.3001 32 1 3.1255 -0.8082 1.2008 33 1 2.0235 2.1010 2.2691 34 1 2.3240 1.4144 3.8836 35 1 3.4692 1.1032 2.5570 36 1 1.0540 -3.3296 5.3278 37 1 0.6539 -3.1634 3.6013 38 1 2.7170 -6.1326 3.4739 39 1 2.1619 -1.1908 6.3518 40 1 1.4446 0.3316 5.7720 41 1 0.5852 -2.8261 7.7858 42 1 -1.7640 -2.4234 9.0567 43 1 -2.7513 -0.1721 8.1497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282802938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:40 Heat of formation + Delta-G solvation = -27.349995 kcal Electronic energy + Delta-G solvation = -29173.741842 eV Core-core repulsion = 25155.254370 eV Total energy + Delta-G solvation = -4018.487472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.17225 -37.92850 -36.78020 -35.99949 -35.84782 -35.30629 -32.81363 -32.66196 -32.51185 -30.05778 -27.43678 -27.19383 -25.45782 -25.01376 -22.68326 -22.24777 -21.33613 -20.24029 -18.58108 -17.79159 -17.50491 -16.98229 -16.70738 -16.33680 -16.00417 -15.57656 -14.95192 -14.89987 -14.39878 -14.27134 -14.12689 -13.63851 -13.26612 -13.00434 -12.87188 -12.76958 -12.65225 -12.50957 -12.46966 -12.29425 -12.11887 -11.96795 -11.83312 -11.61830 -11.51504 -11.28978 -11.24418 -11.21407 -11.16401 -10.81191 -10.75091 -10.59623 -10.20415 -9.96803 -9.57165 -8.93098 -8.57654 -8.34733 -8.14968 -6.19028 -4.26889 1.05648 2.05873 2.81861 2.86258 2.93030 3.20347 3.26616 3.28320 3.33356 3.38598 3.88212 4.14446 4.29124 4.78245 4.85919 4.97365 5.01792 5.05289 5.15318 5.19052 5.24091 5.36523 5.50968 5.60596 5.65994 5.74362 5.80964 5.85075 5.92712 6.03522 6.11405 6.17055 6.21656 6.31203 6.34672 6.43429 6.69781 6.83067 7.23650 7.30765 7.47793 7.51933 7.63395 7.76856 8.04901 8.78445 9.40085 10.88557 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009293 B = 0.005697 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.435578 B = 4913.446197 C = 7045.524497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.015 4.015 3 H 0.115 0.885 4 C 0.220 3.780 5 N -0.437 5.437 6 C 0.135 3.865 7 N -1.001 6.001 8 C 0.096 3.904 9 S 2.779 3.221 10 O -0.986 6.986 11 O -0.969 6.969 12 N -0.987 5.987 13 C 0.244 3.756 14 C -0.543 4.543 15 H 0.064 0.936 16 C 0.068 3.932 17 N -0.885 5.885 18 Si 0.891 3.109 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.211 3.789 23 C -0.026 4.026 24 C -0.193 4.193 25 C -0.218 4.218 26 C -0.051 4.051 27 O -0.167 6.167 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.038 0.962 37 H 0.054 0.946 38 H 0.266 0.734 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.526 12.431 3.370 13.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.039 4.039 3 H 0.133 0.867 4 C -0.099 4.099 5 N -0.113 5.113 6 C 0.008 3.992 7 N -0.838 5.838 8 C -0.050 4.050 9 S 2.788 3.212 10 O -0.970 6.970 11 O -0.953 6.953 12 N -0.827 5.827 13 C 0.122 3.878 14 C -0.583 4.583 15 H 0.082 0.918 16 C -0.136 4.136 17 N -0.523 5.523 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C 0.084 3.916 23 C -0.079 4.079 24 C -0.213 4.213 25 C -0.237 4.237 26 C -0.120 4.120 27 O -0.062 6.062 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.133 0.867 40 H 0.102 0.898 41 H 0.168 0.832 42 H 0.162 0.838 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -2.888 11.883 1.598 12.333 hybrid contribution 1.224 -0.467 0.466 1.390 sum -1.665 11.416 2.064 11.720 Atomic orbital electron populations 1.21838 0.91624 1.04493 1.02201 1.19360 0.97794 0.99555 0.87156 0.86692 1.28957 0.93121 0.93554 0.94275 1.81195 1.09117 1.09093 1.11916 1.21208 1.01796 0.95216 0.81026 1.57849 1.51816 1.36505 1.37653 1.21415 0.96926 0.86184 1.00487 1.02141 0.73402 0.72778 0.72854 1.93581 1.76565 1.49214 1.77660 1.93599 1.67288 1.65769 1.68629 1.57946 1.81006 1.22467 1.21235 1.19264 0.96631 0.72948 0.98915 1.21475 0.94504 0.94351 1.47942 0.91781 1.24939 0.97696 0.95888 0.95125 1.69916 1.35046 1.00055 1.47268 0.86679 0.85110 0.77371 0.78990 1.20150 1.21219 1.20092 1.19468 0.91314 0.98475 0.82385 1.23249 0.91253 0.91880 1.01481 1.21693 0.99201 1.00296 1.00154 1.21822 0.97772 0.99103 1.05010 1.23991 0.96615 0.96955 0.94413 1.84122 1.27028 1.45399 1.49648 0.90141 0.92000 0.91789 0.87402 0.89562 0.92691 0.91339 0.91096 0.94410 0.92782 0.92413 0.86714 0.89783 0.83204 0.83828 0.78607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 7.99 37.16 0.30 -1.49 16 2 C -0.02 -0.18 2.89 -93.41 -0.27 -0.45 16 3 H 0.12 0.99 8.06 -51.93 -0.42 0.57 16 4 C 0.22 3.08 14.64 -20.76 -0.30 2.78 16 5 N -0.44 -7.25 18.54 42.15 0.78 -6.47 16 6 C 0.14 1.93 4.91 -4.04 -0.02 1.91 16 7 N -1.00 -14.36 2.85 -121.76 -0.35 -14.70 16 8 C 0.10 1.03 10.23 59.85 0.61 1.64 16 9 S 2.78 50.30 5.10 -107.50 -0.55 49.75 16 10 O -0.99 -18.55 16.11 -57.17 -0.92 -19.48 16 11 O -0.97 -20.04 13.66 -57.17 -0.78 -20.82 16 12 N -0.99 -18.70 2.81 -116.95 -0.33 -19.03 16 13 C 0.24 5.56 5.45 -5.20 -0.03 5.53 16 14 C -0.54 -12.88 9.38 -34.44 -0.32 -13.20 16 15 H 0.06 1.43 7.81 -52.49 -0.41 1.02 16 16 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -24.06 13.29 55.43 0.74 -23.32 16 18 Si 0.89 19.68 29.54 -169.99 -5.02 14.66 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 22 C 0.21 3.44 5.90 -5.19 -0.03 3.41 16 23 C -0.03 -0.45 6.90 -35.62 -0.25 -0.70 16 24 C -0.19 -3.15 10.81 -39.70 -0.43 -3.58 16 25 C -0.22 -3.11 10.91 -39.70 -0.43 -3.54 16 26 C -0.05 -0.71 12.09 29.42 0.36 -0.36 16 27 O -0.17 -2.87 10.65 5.69 0.06 -2.81 16 28 H 0.08 1.13 8.02 -51.93 -0.42 0.72 16 29 H 0.06 0.81 6.29 -51.93 -0.33 0.49 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.11 1.84 7.20 -51.93 -0.37 1.47 16 32 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.72 7.57 -51.93 -0.39 0.33 16 35 H 0.07 0.63 8.08 -51.93 -0.42 0.22 16 36 H 0.04 0.91 8.12 -51.93 -0.42 0.49 16 37 H 0.05 1.38 6.98 -51.93 -0.36 1.02 16 38 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.11 1.74 8.11 -51.93 -0.42 1.32 16 40 H 0.08 1.19 7.26 -51.93 -0.38 0.81 16 41 H 0.15 2.37 8.06 -52.49 -0.42 1.94 16 42 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.20 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 381.77 15.07 5.75 5.75 Total: -1.00 -31.90 381.77 -7.54 -39.45 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.01 Total: 3.46 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -0.92 Total: -6.44 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: 0.84 Total: -63.52 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -1.64 Total: -43.10 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: 50.30 SS G_CDS: -0.55 Total: 49.75 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.90 -7.54 -39.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282802938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.096 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds