Wall clock time and date at job start Tue Mar 31 2020 23:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47067 * 2 1 4 4 C 1.47191 * 109.47317 * 120.00502 * 2 1 3 5 5 N 2.60798 * 109.47380 * 120.00497 * 2 1 3 6 6 C 1.53004 * 109.47406 * 240.00816 * 2 1 3 7 7 N 1.46500 * 109.47294 * 65.71431 * 6 2 1 8 8 C 1.46496 * 120.00056 * 78.27530 * 7 6 2 9 9 S 1.65597 * 120.00274 * 258.28039 * 7 6 2 10 10 O 1.42099 * 106.40247 * 18.53950 * 9 7 6 11 11 O 1.42103 * 106.40566 * 151.46095 * 9 7 6 12 12 N 1.65606 * 107.21655 * 265.00147 * 9 7 6 13 13 C 1.46493 * 120.00129 * 274.96094 * 12 9 7 14 14 C 1.50701 * 109.47048 * 96.31549 * 13 12 9 15 15 H 1.08001 * 119.99530 * 4.94407 * 14 13 12 16 16 C 1.37875 * 120.00353 * 184.94468 * 14 13 12 17 17 N 1.31517 * 119.99715 * 5.14061 * 16 14 13 18 18 Si 1.86802 * 120.00280 * 185.14319 * 16 14 13 19 19 H 1.48500 * 109.47053 * 59.99711 * 18 16 14 20 20 H 1.48492 * 109.47095 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46774 * 300.00066 * 18 16 14 22 22 C 1.46507 * 119.99708 * 94.96379 * 12 9 7 23 23 C 1.50701 * 109.46824 * 94.99993 * 22 12 9 24 24 C 1.34516 * 125.78567 * 89.71584 * 23 22 12 25 25 C 1.41391 * 106.83737 * 179.88656 * 24 23 22 26 26 C 1.34512 * 106.83780 * 0.37148 * 25 24 23 27 27 O 1.34300 * 108.42408 * 359.77044 * 26 25 24 28 28 H 1.09007 * 109.47122 * 54.71885 * 1 2 3 29 29 H 1.08998 * 109.47350 * 174.71741 * 1 2 3 30 30 H 1.08998 * 109.47492 * 294.72018 * 1 2 3 31 31 H 1.08997 * 109.47407 * 185.72008 * 6 2 1 32 32 H 1.09003 * 109.46538 * 305.72123 * 6 2 1 33 33 H 1.09000 * 109.47204 * 89.99850 * 8 7 6 34 34 H 1.09001 * 109.47606 * 210.00261 * 8 7 6 35 35 H 1.08998 * 109.47261 * 330.00275 * 8 7 6 36 36 H 1.08993 * 109.47326 * 216.31700 * 13 12 9 37 37 H 1.09004 * 109.47239 * 336.32279 * 13 12 9 38 38 H 0.96999 * 119.99764 * 180.02562 * 17 16 14 39 39 H 1.08993 * 109.46752 * 214.99669 * 22 12 9 40 40 H 1.08993 * 109.47343 * 335.00345 * 22 12 9 41 41 H 1.07998 * 126.58251 * 0.02562 * 24 23 22 42 42 H 1.07999 * 126.57824 * 180.16856 * 25 24 23 43 43 H 1.08004 * 125.78558 * 179.75636 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6940 1.2017 5 7 2.3994 -1.2296 2.1293 6 6 2.0400 -0.7211 -1.2494 7 7 1.6673 0.0445 -2.4415 8 6 2.4341 1.2350 -2.8169 9 16 0.3791 -0.4357 -3.3647 10 8 -0.3977 -1.3025 -2.5496 11 8 -0.1436 0.7404 -3.9670 12 7 0.9787 -1.3654 -4.5970 13 6 1.4741 -0.7293 -5.8201 14 6 2.9701 -0.5691 -5.7325 15 1 3.5085 -0.9784 -4.8905 16 6 3.6512 0.0999 -6.7272 17 7 2.9870 0.6854 -7.6997 18 14 5.5174 0.1747 -6.6936 19 1 6.0691 -1.2030 -6.7452 20 1 6.0031 0.9461 -7.8659 21 1 5.9636 0.8400 -5.4433 22 6 1.0136 -2.8240 -4.4640 23 6 -0.2185 -3.4158 -5.0986 24 6 -0.3368 -3.7941 -6.3841 25 6 -1.6501 -4.2925 -6.5451 26 6 -2.2582 -4.1814 -5.3504 27 8 -1.3864 -3.6498 -4.4781 28 1 -0.3634 0.5936 -0.8390 29 1 -0.3634 -1.0233 -0.0946 30 1 -0.3634 0.4297 0.9334 31 1 3.1252 -0.8106 -1.1996 32 1 1.5954 -1.7149 -1.3021 33 1 3.2500 0.9474 -3.4799 34 1 1.7810 1.9412 -3.3296 35 1 2.8418 1.7021 -1.9205 36 1 1.2251 -1.3514 -6.6797 37 1 1.0100 0.2504 -5.9339 38 1 3.4663 1.1557 -8.3997 39 1 1.9015 -3.2130 -4.9623 40 1 1.0427 -3.0919 -3.4080 41 1 0.4257 -3.7313 -7.1463 42 1 -2.0830 -4.6840 -7.4537 43 1 -3.2753 -4.4704 -5.1301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282802941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:43 Heat of formation + Delta-G solvation = -27.483466 kcal Electronic energy + Delta-G solvation = -29111.694794 eV Core-core repulsion = 25093.201533 eV Total energy + Delta-G solvation = -4018.493260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.16606 -38.06652 -36.76888 -35.99501 -35.94089 -35.29470 -32.82976 -32.66865 -32.50973 -30.04611 -27.48223 -27.13710 -25.43294 -25.02247 -22.68738 -22.32621 -21.33210 -20.22954 -18.56568 -17.89884 -17.51583 -16.99594 -16.73217 -16.33910 -15.96323 -15.56395 -15.08543 -14.89467 -14.39445 -14.24496 -14.22314 -13.68106 -13.11507 -13.02196 -12.98166 -12.81023 -12.70599 -12.52036 -12.46717 -12.30330 -12.08858 -11.99372 -11.79044 -11.66698 -11.52815 -11.36116 -11.27264 -11.18924 -11.15027 -10.89029 -10.80820 -10.59728 -10.20094 -9.97191 -9.56579 -8.84154 -8.57812 -8.33591 -8.14449 -6.19383 -4.26468 1.07260 2.06726 2.64233 2.68375 2.93249 3.19308 3.26435 3.27429 3.32880 3.38462 3.78411 4.09609 4.28463 4.63826 4.80370 4.84113 5.01841 5.05971 5.13904 5.17393 5.24939 5.36925 5.51720 5.55254 5.62602 5.67358 5.82669 5.91667 6.02110 6.10103 6.11862 6.19750 6.26961 6.33696 6.43892 6.44703 6.75315 6.83603 7.23212 7.31656 7.44753 7.48847 7.52617 7.76543 8.05168 8.78185 9.39530 10.88275 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.007589 B = 0.006191 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3688.445810 B = 4521.718106 C = 7151.451277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.016 4.016 3 H 0.119 0.881 4 C 0.220 3.780 5 N -0.439 5.439 6 C 0.134 3.866 7 N -1.002 6.002 8 C 0.083 3.917 9 S 2.780 3.220 10 O -0.984 6.984 11 O -0.973 6.973 12 N -0.987 5.987 13 C 0.243 3.757 14 C -0.543 4.543 15 H 0.064 0.936 16 C 0.068 3.932 17 N -0.885 5.885 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.212 3.788 23 C -0.025 4.025 24 C -0.194 4.194 25 C -0.218 4.218 26 C -0.051 4.051 27 O -0.166 6.166 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.055 0.945 38 H 0.266 0.734 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.315 -3.952 7.785 9.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.040 4.040 3 H 0.137 0.863 4 C -0.098 4.098 5 N -0.115 5.115 6 C 0.006 3.994 7 N -0.840 5.840 8 C -0.062 4.062 9 S 2.790 3.210 10 O -0.968 6.968 11 O -0.957 6.957 12 N -0.826 5.826 13 C 0.121 3.879 14 C -0.582 4.582 15 H 0.083 0.917 16 C -0.136 4.136 17 N -0.522 5.522 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.201 1.201 22 C 0.085 3.915 23 C -0.077 4.077 24 C -0.215 4.215 25 C -0.237 4.237 26 C -0.120 4.120 27 O -0.061 6.061 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.102 0.898 41 H 0.168 0.832 42 H 0.161 0.839 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -4.652 -4.303 9.441 11.371 hybrid contribution 1.284 0.198 -0.978 1.626 sum -3.369 -4.105 8.464 9.992 Atomic orbital electron populations 1.21891 0.91391 1.04803 1.02467 1.19379 0.97974 0.99900 0.86739 0.86333 1.29024 0.93011 0.93493 0.94321 1.81212 1.09273 1.09475 1.11578 1.21131 1.01487 0.94581 0.82233 1.57824 1.51351 1.37997 1.36795 1.21659 0.97710 0.86109 1.00686 1.02059 0.73179 0.73292 0.72512 1.93578 1.67246 1.67283 1.68656 1.93584 1.76758 1.48491 1.76870 1.57940 1.79021 1.13050 1.32626 1.19269 0.94274 0.93970 0.80347 1.21460 0.92145 1.36760 1.07825 0.91748 1.24941 0.98415 0.94797 0.95468 1.69934 1.35838 1.33690 1.12779 0.86668 0.85478 0.78215 0.77679 1.20221 1.21269 1.20064 1.19441 0.90996 0.80612 1.00490 1.23249 0.87782 1.03627 0.93090 1.21691 0.98256 1.05058 0.96467 1.21818 0.95586 1.07434 0.98877 1.23982 0.95872 1.03136 0.88999 1.84118 1.20365 1.62457 1.39146 0.91600 0.89853 0.91786 0.89664 0.88876 0.90529 0.90079 0.91847 0.94593 0.92680 0.92421 0.86782 0.89765 0.83250 0.83861 0.78641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 7.77 37.16 0.29 -1.30 16 2 C -0.02 -0.16 2.89 -93.41 -0.27 -0.43 16 3 H 0.12 0.93 7.55 -51.93 -0.39 0.54 16 4 C 0.22 2.54 14.64 -20.76 -0.30 2.24 16 5 N -0.44 -6.15 18.54 42.16 0.78 -5.37 16 6 C 0.13 1.51 4.88 -4.04 -0.02 1.49 16 7 N -1.00 -14.31 2.90 -121.76 -0.35 -14.67 16 8 C 0.08 1.17 10.64 59.84 0.64 1.80 16 9 S 2.78 50.12 5.33 -107.50 -0.57 49.55 16 10 O -0.98 -17.44 13.50 -57.17 -0.77 -18.21 16 11 O -0.97 -21.07 15.50 -57.17 -0.89 -21.95 16 12 N -0.99 -18.67 2.81 -116.95 -0.33 -19.00 16 13 C 0.24 5.54 5.46 -5.20 -0.03 5.51 16 14 C -0.54 -12.70 8.63 -34.44 -0.30 -13.00 16 15 H 0.06 1.43 7.82 -52.49 -0.41 1.02 16 16 C 0.07 1.68 5.45 -17.82 -0.10 1.59 16 17 N -0.88 -23.68 13.29 55.43 0.74 -22.95 16 18 Si 0.89 19.15 29.54 -169.99 -5.02 14.13 16 19 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 C 0.21 3.45 5.89 -5.19 -0.03 3.41 16 23 C -0.03 -0.43 6.90 -35.62 -0.25 -0.67 16 24 C -0.19 -3.17 10.81 -39.70 -0.43 -3.60 16 25 C -0.22 -3.11 10.91 -39.70 -0.43 -3.55 16 26 C -0.05 -0.72 12.09 29.42 0.36 -0.36 16 27 O -0.17 -2.83 10.65 5.73 0.06 -2.77 16 28 H 0.07 0.78 7.04 -51.92 -0.37 0.42 16 29 H 0.08 0.99 7.49 -51.93 -0.39 0.60 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.04 7.23 -51.93 -0.38 0.67 16 33 H 0.08 1.21 7.38 -51.93 -0.38 0.82 16 34 H 0.08 1.26 7.07 -51.93 -0.37 0.89 16 35 H 0.06 0.64 7.49 -51.93 -0.39 0.25 16 36 H 0.04 0.86 8.12 -51.93 -0.42 0.44 16 37 H 0.06 1.42 6.95 -51.93 -0.36 1.06 16 38 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 39 H 0.11 1.73 8.11 -51.93 -0.42 1.31 16 40 H 0.08 1.18 7.47 -51.93 -0.39 0.80 16 41 H 0.15 2.36 8.06 -52.49 -0.42 1.93 16 42 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.20 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -31.19 378.82 -7.43 -38.63 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.91 Total: 3.77 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -0.87 Total: -6.88 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.84 Total: -61.98 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -1.60 Total: -42.93 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Atomic # 16 Polarization: 50.12 SS G_CDS: -0.57 Total: 49.55 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.19 -7.43 -38.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282802941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.143 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds