Wall clock time and date at job start Tue Mar 31 2020 23:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31512 * 120.00357 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99802 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46841 * 89.99881 * 8 6 4 10 10 H 1.48494 * 109.47129 * 210.00104 * 8 6 4 11 11 H 1.48501 * 109.47268 * 330.00196 * 8 6 4 12 12 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 13 13 C 1.46505 * 120.00155 * 300.00168 * 12 2 1 14 14 S 1.65599 * 120.00129 * 120.00044 * 12 2 1 15 15 O 1.42106 * 106.40062 * 203.54297 * 14 12 2 16 16 O 1.42107 * 106.39897 * 336.45833 * 14 12 2 17 17 N 1.65593 * 107.21769 * 90.00204 * 14 12 2 18 18 C 1.46497 * 120.00401 * 65.00110 * 17 14 12 19 19 H 1.09007 * 109.46743 * 335.00004 * 18 17 14 20 20 C 1.50702 * 109.47323 * 94.99786 * 18 17 14 21 21 N 1.34777 * 119.99941 * 180.02562 * 20 18 17 22 22 O 1.21282 * 119.99628 * 0.02562 * 20 18 17 23 23 C 1.50699 * 109.47240 * 215.00094 * 18 17 14 24 24 C 1.38238 * 120.00039 * 319.72372 * 23 18 17 25 25 C 1.38235 * 119.99660 * 179.81148 * 24 23 18 26 26 C 1.38227 * 120.00252 * 0.39615 * 25 24 23 27 27 C 1.38232 * 120.00121 * 359.85770 * 26 25 24 28 28 C 1.38234 * 120.00200 * 359.95600 * 27 26 25 29 29 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 30 30 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 32 32 H 0.97001 * 120.00117 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47192 * 89.99362 * 13 12 2 34 34 H 1.08998 * 109.47450 * 210.00338 * 13 12 2 35 35 H 1.09005 * 109.46920 * 330.00020 * 13 12 2 36 36 H 0.97001 * 119.99583 * 245.00011 * 17 14 12 37 37 H 0.96994 * 119.99823 * 359.97438 * 21 20 18 38 38 H 0.96999 * 119.99847 * 180.02562 * 21 20 18 39 39 H 1.07992 * 119.99758 * 0.02562 * 24 23 18 40 40 H 1.08005 * 119.99608 * 180.23293 * 25 24 23 41 41 H 1.08008 * 119.99969 * 179.83481 * 26 25 24 42 42 H 1.08009 * 120.00297 * 179.97438 * 27 26 25 43 43 H 1.07994 * 120.00428 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 2.1381 -0.8590 3.5566 8 14 0.6260 1.2800 2.6541 9 1 -0.8019 0.8746 2.6993 10 1 0.9774 1.9955 3.9070 11 1 0.8493 2.1774 1.4922 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 16 2.9704 0.1140 -2.2863 15 8 2.8227 -0.5648 -3.5259 16 8 2.6903 1.4972 -2.1193 17 7 4.5437 -0.1044 -1.8181 18 6 5.1357 -1.4442 -1.8416 19 1 4.3472 -2.1914 -1.7510 20 6 5.8717 -1.6456 -3.1411 21 7 6.4991 -2.8129 -3.3864 22 8 5.8994 -0.7571 -3.9663 23 6 6.0987 -1.5882 -0.6914 24 6 6.9295 -0.5374 -0.3498 25 6 7.8100 -0.6682 0.7077 26 6 7.8656 -1.8524 1.4185 27 6 7.0385 -2.9049 1.0737 28 6 6.1552 -2.7730 0.0186 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9035 -0.5277 4.4376 33 1 0.7375 -2.1445 -1.9992 34 1 2.4628 -2.5821 -1.9863 35 1 1.5295 -2.5969 -0.4707 36 1 5.0733 0.6548 -1.5283 37 1 6.4772 -3.5233 -2.7263 38 1 6.9731 -2.9424 -4.2227 39 1 6.8882 0.3867 -0.9071 40 1 8.4565 0.1541 0.9769 41 1 8.5555 -1.9554 2.2431 42 1 7.0821 -3.8304 1.6289 43 1 5.5093 -3.5954 -0.2511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282909011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:44 Heat of formation + Delta-G solvation = -71.921812 kcal Electronic energy + Delta-G solvation = -29483.327627 eV Core-core repulsion = 25462.907376 eV Total energy + Delta-G solvation = -4020.420251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.19333 -38.59284 -36.77316 -36.44743 -35.33361 -35.03875 -33.70894 -32.55024 -31.00395 -30.62136 -30.07080 -26.69249 -25.76478 -25.06758 -22.66317 -22.14398 -20.96354 -20.48427 -18.97223 -17.89043 -17.64744 -17.18789 -17.09471 -16.41901 -16.23420 -15.72111 -15.38685 -15.16698 -14.65453 -14.40007 -14.31368 -13.75871 -13.66883 -13.35610 -13.25421 -12.87840 -12.67922 -12.59476 -12.35595 -12.14670 -11.95954 -11.69704 -11.60692 -11.49566 -11.25659 -11.15103 -11.02689 -10.96287 -10.66120 -10.49369 -10.15849 -9.71004 -9.63026 -9.48702 -9.32331 -8.86177 -8.68974 -8.67462 -8.16840 -6.18881 -4.19530 1.05830 1.33061 1.45729 2.62339 3.21330 3.22654 3.34806 3.37743 3.48141 3.87425 4.05411 4.31825 4.51568 4.68735 4.85201 4.90237 5.04022 5.05474 5.13761 5.14931 5.40309 5.49735 5.56668 5.73938 5.96288 5.99488 6.04913 6.12305 6.23729 6.36606 6.46368 6.49482 6.53161 6.55763 6.60498 6.73279 6.82882 6.99701 7.05128 7.24024 7.28407 7.36998 7.60264 8.23747 8.39514 8.82953 9.42493 10.93117 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010449 B = 0.005910 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.007941 B = 4736.790484 C = 6415.781072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.238 3.762 3 H 0.057 0.943 4 C -0.525 4.525 5 H 0.084 0.916 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.874 3.126 9 H -0.276 1.276 10 H -0.295 1.295 11 H -0.262 1.262 12 N -0.984 5.984 13 C 0.101 3.899 14 S 2.783 3.217 15 O -0.982 6.982 16 O -0.978 6.978 17 N -1.100 6.100 18 C 0.188 3.812 19 H 0.116 0.884 20 C 0.510 3.490 21 N -0.853 5.853 22 O -0.521 6.521 23 C -0.087 4.087 24 C -0.100 4.100 25 C -0.115 4.115 26 C -0.113 4.113 27 C -0.111 4.111 28 C -0.101 4.101 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.265 0.735 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.417 0.583 37 H 0.401 0.599 38 H 0.401 0.599 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.236 -7.038 -6.464 14.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.134 3.866 3 H 0.074 0.926 4 C -0.564 4.564 5 H 0.102 0.898 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.704 3.296 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.826 5.826 13 C -0.045 4.045 14 S 2.792 3.208 15 O -0.966 6.966 16 O -0.962 6.962 17 N -0.857 5.857 18 C 0.076 3.924 19 H 0.134 0.866 20 C 0.291 3.709 21 N -0.418 5.418 22 O -0.395 6.395 23 C -0.089 4.089 24 C -0.118 4.118 25 C -0.133 4.133 26 C -0.131 4.131 27 C -0.129 4.129 28 C -0.119 4.119 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.252 0.748 37 H 0.229 0.771 38 H 0.232 0.768 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.143 0.857 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.714 -5.973 -7.531 13.666 hybrid contribution -0.142 0.448 0.922 1.035 sum 9.572 -5.525 -6.609 12.877 Atomic orbital electron populations 1.22414 0.98753 1.01366 0.99207 1.19106 0.91018 0.93448 0.83074 0.92560 1.21162 1.32648 1.14383 0.88184 0.89836 1.24857 0.95508 0.96428 0.95772 1.69864 1.45052 1.40077 0.97924 0.87059 0.80834 0.84118 0.77567 1.20317 1.22207 1.18629 1.57540 1.64464 1.21569 1.39068 1.21325 0.99139 0.81698 1.02348 1.01892 0.72371 0.73297 0.73260 1.93585 1.85665 1.76089 1.41218 1.93591 1.83475 1.32299 1.86852 1.55892 1.32050 1.13164 1.84612 1.19337 0.95768 0.86706 0.90631 0.86614 1.21010 0.78797 0.82323 0.88734 1.43758 1.57230 1.17162 1.23602 1.90741 1.59608 1.42033 1.47117 1.19481 0.97203 0.95355 0.96830 1.20887 0.95334 0.98153 0.97457 1.21083 0.98890 0.97745 0.95576 1.21176 0.99187 0.93493 0.99250 1.21085 0.95840 0.99180 0.96793 1.20946 0.98454 0.96800 0.95736 0.94688 0.92240 0.93296 0.92523 0.93375 0.93330 0.89407 0.74787 0.77086 0.76791 0.86098 0.85973 0.86100 0.85745 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 8.67 37.16 0.32 -3.04 16 2 C 0.24 5.41 2.21 -69.08 -0.15 5.26 16 3 H 0.06 1.38 5.97 -51.93 -0.31 1.07 16 4 C -0.52 -13.28 8.57 -34.44 -0.30 -13.57 16 5 H 0.08 2.21 7.58 -52.49 -0.40 1.82 16 6 C 0.08 2.08 5.45 -17.82 -0.10 1.99 16 7 N -0.89 -25.29 13.96 55.43 0.77 -24.51 16 8 Si 0.87 21.00 24.37 -169.99 -4.14 16.86 16 9 H -0.28 -6.43 6.87 56.52 0.39 -6.04 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.26 -6.21 6.53 56.52 0.37 -5.84 16 12 N -0.98 -19.27 3.12 -115.85 -0.36 -19.63 16 13 C 0.10 1.65 9.08 59.85 0.54 2.19 16 14 S 2.78 54.82 6.00 -107.50 -0.65 54.18 16 15 O -0.98 -20.44 16.97 -57.17 -0.97 -21.41 16 16 O -0.98 -22.08 16.70 -57.17 -0.95 -23.04 16 17 N -1.10 -18.48 4.97 -6.88 -0.03 -18.51 16 18 C 0.19 2.69 2.80 -70.24 -0.20 2.49 16 19 H 0.12 1.51 5.97 -51.92 -0.31 1.20 16 20 C 0.51 7.28 7.47 -10.98 -0.08 7.19 16 21 N -0.85 -8.02 8.77 31.22 0.27 -7.74 16 22 O -0.52 -9.57 17.27 5.56 0.10 -9.47 16 23 C -0.09 -1.15 4.74 -104.62 -0.50 -1.64 16 24 C -0.10 -1.32 9.15 -39.58 -0.36 -1.68 16 25 C -0.11 -1.38 10.05 -39.59 -0.40 -1.78 16 26 C -0.11 -1.29 10.05 -39.59 -0.40 -1.68 16 27 C -0.11 -1.26 10.05 -39.58 -0.40 -1.66 16 28 C -0.10 -1.18 9.51 -39.58 -0.38 -1.56 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 31 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.67 6.17 -51.93 -0.32 0.35 16 35 H 0.09 1.47 7.02 -51.93 -0.36 1.11 16 36 H 0.42 6.51 7.10 -34.46 -0.24 6.26 16 37 H 0.40 2.64 8.55 -40.82 -0.35 2.30 16 38 H 0.40 3.19 8.93 -40.82 -0.36 2.83 16 39 H 0.12 1.51 6.83 -52.49 -0.36 1.15 16 40 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 41 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 42 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 43 H 0.13 1.17 8.04 -52.49 -0.42 0.75 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -35.66 362.30 -8.20 -43.86 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -5.30 Total: 11.47 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.39 Total: -7.50 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: 0.65 Total: -70.40 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -1.83 Total: -53.92 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.14 Total: 16.86 kcal Atomic # 16 Polarization: 54.82 SS G_CDS: -0.65 Total: 54.18 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.66 -8.20 -43.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282909011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.063 kcal (2) G-P(sol) polarization free energy of solvation -35.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds