Wall clock time and date at job start Tue Mar 31 2020 23:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47497 * 2 1 4 4 C 1.50699 * 109.46802 * 239.99996 * 2 1 3 5 5 H 1.07995 * 120.00445 * 239.99749 * 4 2 1 6 6 C 1.37882 * 120.00148 * 60.00471 * 4 2 1 7 7 N 1.31513 * 119.99621 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00420 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47021 * 89.99640 * 8 6 4 10 10 H 1.48491 * 109.47239 * 209.99708 * 8 6 4 11 11 H 1.48504 * 109.46960 * 330.00089 * 8 6 4 12 12 N 1.46502 * 109.47103 * 120.00287 * 2 1 3 13 13 C 1.46502 * 119.99963 * 54.52326 * 12 2 1 14 14 S 1.65600 * 119.99822 * 234.52351 * 12 2 1 15 15 O 1.42097 * 106.40326 * 22.52216 * 14 12 2 16 16 O 1.42096 * 106.40085 * 155.44561 * 14 12 2 17 17 N 1.65603 * 107.21651 * 268.98412 * 14 12 2 18 18 C 1.46495 * 120.00101 * 66.87141 * 17 14 12 19 19 H 1.08995 * 109.47218 * 13.42359 * 18 17 14 20 20 C 1.50706 * 109.47080 * 253.42262 * 18 17 14 21 21 N 1.34776 * 119.99935 * 170.78737 * 20 18 17 22 22 O 1.21282 * 119.99894 * 350.79429 * 20 18 17 23 23 C 1.50701 * 109.47181 * 133.42484 * 18 17 14 24 24 C 1.38233 * 119.99793 * 39.72797 * 23 18 17 25 25 C 1.38246 * 119.99766 * 179.79194 * 24 23 18 26 26 C 1.38229 * 119.99946 * 0.43277 * 25 24 23 27 27 C 1.38244 * 120.00137 * 359.82154 * 26 25 24 28 28 C 1.38233 * 120.00105 * 219.99952 * 23 18 17 29 29 H 1.09000 * 109.47192 * 53.69613 * 1 2 3 30 30 H 1.09004 * 109.46801 * 293.70513 * 1 2 3 31 31 H 1.08999 * 109.47495 * 173.70381 * 1 2 3 32 32 H 0.96997 * 119.99969 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.46800 * 89.99793 * 13 12 2 34 34 H 1.08994 * 109.47013 * 209.99597 * 13 12 2 35 35 H 1.08995 * 109.47226 * 330.00180 * 13 12 2 36 36 H 0.97010 * 120.00001 * 246.87171 * 17 14 12 37 37 H 0.97004 * 119.99913 * 0.02562 * 21 20 18 38 38 H 0.96996 * 120.00235 * 180.02562 * 21 20 18 39 39 H 1.07998 * 120.00578 * 359.97438 * 24 23 18 40 40 H 1.08001 * 119.99725 * 180.27199 * 25 24 23 41 41 H 1.07997 * 120.00315 * 179.83532 * 26 25 24 42 42 H 1.07997 * 120.00026 * 179.97438 * 27 26 25 43 43 H 1.08002 * 119.99756 * 359.97438 * 28 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 1.3445 -2.1614 -4.4125 10 1 2.4871 -0.1401 -5.1121 11 1 3.6306 -1.7566 -3.7121 12 7 2.0183 -0.6907 1.1961 13 6 1.5682 -2.0535 1.4901 14 16 3.0790 0.0691 2.2159 15 8 2.9162 1.4638 1.9978 16 8 2.9198 -0.5423 3.4886 17 7 4.6077 -0.3089 1.7034 18 6 5.0905 0.1857 0.4118 19 1 4.4193 0.9628 0.0463 20 6 5.1303 -0.9501 -0.5780 21 7 5.3644 -0.7001 -1.8815 22 8 4.9515 -2.0890 -0.2016 23 6 6.4756 0.7558 0.5780 24 6 7.3891 0.1235 1.4006 25 6 8.6611 0.6440 1.5498 26 6 9.0166 1.8017 0.8834 27 6 8.1014 2.4370 0.0649 28 6 6.8308 1.9140 -0.0876 29 1 -0.3633 0.6084 -0.8282 30 1 -0.3633 0.4132 0.9410 31 1 -0.3634 -1.0214 -0.1127 32 1 0.7082 1.1610 -3.4843 33 1 2.2457 -2.7685 1.0232 34 1 1.5626 -2.2095 2.5688 35 1 0.5618 -2.1965 1.0970 36 1 5.1835 -0.8579 2.2585 37 1 5.5077 0.2109 -2.1826 38 1 5.3896 -1.4310 -2.5187 39 1 7.1101 -0.7788 1.9244 40 1 9.3762 0.1476 2.1890 41 1 10.0094 2.2099 1.0020 42 1 8.3790 3.3417 -0.4554 43 1 6.1158 2.4102 -0.7271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282909040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:51 Heat of formation + Delta-G solvation = -81.555487 kcal Electronic energy + Delta-G solvation = -29919.477150 eV Core-core repulsion = 25898.639151 eV Total energy + Delta-G solvation = -4020.837999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.97704 -38.39310 -36.71024 -36.10508 -35.27250 -34.83809 -33.20406 -32.58727 -31.04185 -30.66379 -29.03732 -26.47790 -25.62047 -25.05344 -22.68821 -22.02978 -20.72698 -20.14857 -18.92557 -17.62193 -17.28553 -17.18182 -16.61933 -16.42420 -16.00295 -15.60069 -15.16660 -14.98336 -14.58276 -14.23429 -13.91809 -13.55874 -13.50485 -13.41536 -13.16859 -12.76128 -12.67505 -12.30834 -11.97349 -11.79416 -11.69077 -11.50208 -11.37385 -11.18439 -11.16661 -11.03619 -11.02341 -10.79052 -10.49105 -10.32151 -10.26373 -9.90526 -9.34652 -9.15289 -9.07346 -8.96554 -8.65642 -8.51825 -7.91655 -6.11651 -4.18408 1.14440 1.32658 1.35640 3.10857 3.17100 3.26485 3.29125 3.38766 3.66886 4.13327 4.15254 4.31669 4.67793 4.80571 4.93000 5.00265 5.07249 5.18620 5.30850 5.33516 5.46513 5.48728 5.71713 5.82654 5.91380 6.01425 6.31329 6.38526 6.43884 6.46495 6.54905 6.70832 6.83805 6.86386 6.91526 7.09345 7.17843 7.25470 7.51361 7.65554 7.76971 7.80063 8.02149 8.25494 8.73981 8.90816 9.48125 10.93398 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010858 B = 0.006121 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.054430 B = 4573.444920 C = 6008.190214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.262 3.738 3 H 0.058 0.942 4 C -0.522 4.522 5 H 0.072 0.928 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.892 3.108 9 H -0.285 1.285 10 H -0.290 1.290 11 H -0.269 1.269 12 N -0.986 5.986 13 C 0.101 3.899 14 S 2.782 3.218 15 O -0.980 6.980 16 O -0.995 6.995 17 N -1.104 6.104 18 C 0.182 3.818 19 H 0.130 0.870 20 C 0.534 3.466 21 N -0.844 5.844 22 O -0.533 6.533 23 C -0.085 4.085 24 C -0.102 4.102 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.117 4.117 28 C -0.105 4.105 29 H 0.089 0.911 30 H 0.012 0.988 31 H 0.035 0.965 32 H 0.262 0.738 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.412 0.588 37 H 0.397 0.603 38 H 0.400 0.600 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.829 1.113 2.942 13.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.159 3.841 3 H 0.076 0.924 4 C -0.562 4.562 5 H 0.090 0.910 6 C -0.136 4.136 7 N -0.527 5.527 8 Si 0.720 3.280 9 H -0.212 1.212 10 H -0.216 1.216 11 H -0.194 1.194 12 N -0.829 5.829 13 C -0.045 4.045 14 S 2.791 3.209 15 O -0.963 6.963 16 O -0.979 6.979 17 N -0.860 5.860 18 C 0.070 3.930 19 H 0.147 0.853 20 C 0.316 3.684 21 N -0.407 5.407 22 O -0.408 6.408 23 C -0.087 4.087 24 C -0.121 4.121 25 C -0.138 4.138 26 C -0.139 4.139 27 C -0.135 4.135 28 C -0.124 4.124 29 H 0.108 0.892 30 H 0.031 0.969 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.246 0.754 37 H 0.225 0.775 38 H 0.232 0.768 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.239 1.225 3.890 12.901 hybrid contribution 0.556 -0.856 -1.605 1.902 sum 12.795 0.369 2.285 13.003 Atomic orbital electron populations 1.22013 0.97854 1.00525 0.99645 1.18801 0.92162 0.92561 0.80560 0.92450 1.21564 1.31720 1.13092 0.89789 0.91029 1.24892 0.95084 0.94842 0.98763 1.69906 1.36443 1.22721 1.23586 0.86658 0.79482 0.79268 0.82574 1.21168 1.21596 1.19386 1.57586 1.59024 1.25364 1.40908 1.21256 1.01163 0.82821 0.99302 1.01833 0.72471 0.73725 0.72897 1.93585 1.85378 1.31028 1.86316 1.93542 1.85602 1.78591 1.40186 1.55939 1.34738 1.67943 1.27394 1.19409 0.94377 0.95151 0.84045 0.85279 1.20350 0.74721 0.90071 0.83240 1.43728 1.75314 1.12708 1.08931 1.90672 1.48660 1.22505 1.78998 1.19789 0.94412 0.96007 0.98466 1.20976 0.93241 0.99774 0.98071 1.21110 0.96203 0.96521 0.99958 1.21168 0.99494 0.95856 0.97333 1.21122 0.93472 0.99978 0.98975 1.21126 0.96920 0.94962 0.99392 0.89249 0.96911 0.94607 0.92844 0.93235 0.92283 0.90869 0.75434 0.77534 0.76828 0.85903 0.86012 0.86177 0.85769 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.57 37.16 0.32 -2.93 16 2 C 0.26 6.13 2.66 -69.08 -0.18 5.94 16 3 H 0.06 1.46 6.81 -51.93 -0.35 1.11 16 4 C -0.52 -12.51 7.62 -34.44 -0.26 -12.77 16 5 H 0.07 1.77 6.40 -52.49 -0.34 1.43 16 6 C 0.07 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -22.90 11.39 55.43 0.63 -22.27 16 8 Si 0.89 19.15 29.54 -169.99 -5.02 14.12 16 9 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.27 -5.31 6.17 56.52 0.35 -4.96 16 12 N -0.99 -20.57 3.12 -115.86 -0.36 -20.93 16 13 C 0.10 1.91 10.16 59.85 0.61 2.52 16 14 S 2.78 55.39 6.11 -107.50 -0.66 54.73 16 15 O -0.98 -21.79 15.95 -57.17 -0.91 -22.70 16 16 O -0.99 -20.89 16.76 -57.17 -0.96 -21.85 16 17 N -1.10 -18.64 4.85 -6.88 -0.03 -18.68 16 18 C 0.18 2.97 2.95 -70.23 -0.21 2.77 16 19 H 0.13 2.25 7.31 -51.93 -0.38 1.87 16 20 C 0.53 9.27 5.70 -10.98 -0.06 9.21 16 21 N -0.84 -12.64 8.87 31.22 0.28 -12.36 16 22 O -0.53 -10.78 16.78 5.56 0.09 -10.69 16 23 C -0.08 -1.16 4.94 -104.62 -0.52 -1.67 16 24 C -0.10 -1.28 9.25 -39.58 -0.37 -1.65 16 25 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 26 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 27 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 28 C -0.11 -1.26 9.67 -39.58 -0.38 -1.65 16 29 H 0.09 2.23 6.26 -51.93 -0.33 1.91 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.03 0.79 6.82 -51.93 -0.35 0.44 16 32 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.03 7.03 -51.93 -0.36 0.66 16 35 H 0.07 1.35 6.30 -51.93 -0.33 1.02 16 36 H 0.41 6.11 7.33 -34.48 -0.25 5.86 16 37 H 0.40 4.96 8.83 -40.82 -0.36 4.60 16 38 H 0.40 5.95 7.99 -40.82 -0.33 5.62 16 39 H 0.12 1.46 6.79 -52.49 -0.36 1.11 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.13 1.40 8.04 -52.49 -0.42 0.98 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -31.53 365.39 -9.24 -40.77 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -5.46 Total: 17.89 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.34 Total: -3.55 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: 0.51 Total: -74.24 kcal Atomic # 8 Polarization: -53.46 SS G_CDS: -1.78 Total: -55.24 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.12 kcal Atomic # 16 Polarization: 55.39 SS G_CDS: -0.66 Total: 54.73 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.53 -9.24 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282909040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.783 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds