Wall clock time and date at job start Tue Mar 31 2020 23:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47497 * 2 1 4 4 C 1.50699 * 109.46802 * 239.99996 * 2 1 3 5 5 H 1.07995 * 120.00445 * 239.99749 * 4 2 1 6 6 C 1.37882 * 120.00148 * 60.00471 * 4 2 1 7 7 N 1.31513 * 119.99621 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00420 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47021 * 89.99640 * 8 6 4 10 10 H 1.48491 * 109.47239 * 209.99708 * 8 6 4 11 11 H 1.48504 * 109.46960 * 330.00089 * 8 6 4 12 12 N 1.46502 * 109.47103 * 120.00287 * 2 1 3 13 13 C 1.46502 * 119.99963 * 54.52326 * 12 2 1 14 14 S 1.65600 * 119.99822 * 234.52351 * 12 2 1 15 15 O 1.42097 * 106.40326 * 22.52216 * 14 12 2 16 16 O 1.42096 * 106.40085 * 155.44561 * 14 12 2 17 17 N 1.65603 * 107.21651 * 268.98412 * 14 12 2 18 18 C 1.46495 * 120.00101 * 66.87141 * 17 14 12 19 19 H 1.08995 * 109.47218 * 13.42359 * 18 17 14 20 20 C 1.50706 * 109.47080 * 253.42262 * 18 17 14 21 21 N 1.34776 * 119.99935 * 170.78737 * 20 18 17 22 22 O 1.21282 * 119.99894 * 350.79429 * 20 18 17 23 23 C 1.50701 * 109.47181 * 133.42484 * 18 17 14 24 24 C 1.38233 * 119.99793 * 39.72797 * 23 18 17 25 25 C 1.38246 * 119.99766 * 179.79194 * 24 23 18 26 26 C 1.38229 * 119.99946 * 0.43277 * 25 24 23 27 27 C 1.38244 * 120.00137 * 359.82154 * 26 25 24 28 28 C 1.38233 * 120.00105 * 219.99952 * 23 18 17 29 29 H 1.09000 * 109.47192 * 53.69613 * 1 2 3 30 30 H 1.09004 * 109.46801 * 293.70513 * 1 2 3 31 31 H 1.08999 * 109.47495 * 173.70381 * 1 2 3 32 32 H 0.96997 * 119.99969 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.46800 * 89.99793 * 13 12 2 34 34 H 1.08994 * 109.47013 * 209.99597 * 13 12 2 35 35 H 1.08995 * 109.47226 * 330.00180 * 13 12 2 36 36 H 0.97010 * 120.00001 * 246.87171 * 17 14 12 37 37 H 0.97004 * 119.99913 * 0.02562 * 21 20 18 38 38 H 0.96996 * 120.00235 * 180.02562 * 21 20 18 39 39 H 1.07998 * 120.00578 * 359.97438 * 24 23 18 40 40 H 1.08001 * 119.99725 * 180.27199 * 25 24 23 41 41 H 1.07997 * 120.00315 * 179.83532 * 26 25 24 42 42 H 1.07997 * 120.00026 * 179.97438 * 27 26 25 43 43 H 1.08002 * 119.99756 * 359.97438 * 28 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 1.3445 -2.1614 -4.4125 10 1 2.4871 -0.1401 -5.1121 11 1 3.6306 -1.7566 -3.7121 12 7 2.0183 -0.6907 1.1961 13 6 1.5682 -2.0535 1.4901 14 16 3.0790 0.0691 2.2159 15 8 2.9162 1.4638 1.9978 16 8 2.9198 -0.5423 3.4886 17 7 4.6077 -0.3089 1.7034 18 6 5.0905 0.1857 0.4118 19 1 4.4193 0.9628 0.0463 20 6 5.1303 -0.9501 -0.5780 21 7 5.3644 -0.7001 -1.8815 22 8 4.9515 -2.0890 -0.2016 23 6 6.4756 0.7558 0.5780 24 6 7.3891 0.1235 1.4006 25 6 8.6611 0.6440 1.5498 26 6 9.0166 1.8017 0.8834 27 6 8.1014 2.4370 0.0649 28 6 6.8308 1.9140 -0.0876 29 1 -0.3633 0.6084 -0.8282 30 1 -0.3633 0.4132 0.9410 31 1 -0.3634 -1.0214 -0.1127 32 1 0.7082 1.1610 -3.4843 33 1 2.2457 -2.7685 1.0232 34 1 1.5626 -2.2095 2.5688 35 1 0.5618 -2.1965 1.0970 36 1 5.1835 -0.8579 2.2585 37 1 5.5077 0.2109 -2.1826 38 1 5.3896 -1.4310 -2.5187 39 1 7.1101 -0.7788 1.9244 40 1 9.3762 0.1476 2.1890 41 1 10.0094 2.2099 1.0020 42 1 8.3790 3.3417 -0.4554 43 1 6.1158 2.4102 -0.7271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282909040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:50 Heat of formation + Delta-G solvation = -105.950558 kcal Electronic energy + Delta-G solvation = -29920.534999 eV Core-core repulsion = 25898.639151 eV Total energy + Delta-G solvation = -4021.895849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.12206 -39.50596 -38.39486 -37.85355 -36.96367 -36.12371 -34.55869 -34.41028 -31.96525 -31.62753 -30.85644 -27.69103 -27.34726 -26.86532 -23.56311 -23.03595 -22.51730 -21.42846 -20.44112 -19.02547 -18.72738 -18.54016 -18.25423 -18.02388 -17.27584 -16.98389 -16.57192 -16.27841 -15.92724 -15.39421 -15.28287 -15.15513 -14.87220 -14.73814 -14.47559 -14.24598 -13.68043 -13.63623 -13.60757 -13.46806 -13.21321 -13.16771 -13.02767 -12.93915 -12.75632 -12.53748 -12.24624 -12.12394 -12.10902 -11.90490 -11.87312 -11.56005 -11.09837 -10.51435 -10.43988 -10.40837 -9.81661 -9.69202 -9.60390 -8.01072 -6.13199 -0.37319 0.35835 0.50695 1.43514 1.50760 1.57868 1.77857 1.88177 2.50358 2.54810 2.67410 2.98171 3.27979 3.37314 3.59881 3.83108 4.07262 4.10276 4.15510 4.21497 4.32707 4.42008 4.63957 4.74028 4.76270 4.84047 4.98431 5.02760 5.04986 5.15640 5.16776 5.21690 5.56058 5.62054 5.62366 5.64552 5.75351 5.86850 5.98247 5.99609 6.09665 6.15421 6.36508 6.55548 6.97213 7.44877 7.56044 9.03299 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010858 B = 0.006121 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.054430 B = 4573.444920 C = 6008.190214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.266 3.734 3 H 0.033 0.967 4 C -0.514 4.514 5 H 0.066 0.934 6 C 0.030 3.970 7 N -0.915 5.915 8 Si 0.940 3.060 9 H -0.299 1.299 10 H -0.288 1.288 11 H -0.244 1.244 12 N -0.992 5.992 13 C 0.100 3.900 14 S 2.797 3.203 15 O -1.005 7.005 16 O -1.005 7.005 17 N -1.095 6.095 18 C 0.185 3.815 19 H 0.113 0.887 20 C 0.532 3.468 21 N -0.834 5.834 22 O -0.566 6.566 23 C -0.104 4.104 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.117 4.117 28 C -0.117 4.117 29 H 0.069 0.931 30 H 0.021 0.979 31 H 0.039 0.961 32 H 0.260 0.740 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.422 0.578 37 H 0.409 0.591 38 H 0.403 0.597 39 H 0.121 0.879 40 H 0.145 0.855 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.101 1.114 2.758 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.162 3.838 3 H 0.051 0.949 4 C -0.554 4.554 5 H 0.084 0.916 6 C -0.170 4.170 7 N -0.554 5.554 8 Si 0.767 3.233 9 H -0.227 1.227 10 H -0.214 1.214 11 H -0.168 1.168 12 N -0.834 5.834 13 C -0.045 4.045 14 S 2.806 3.194 15 O -0.988 6.988 16 O -0.990 6.990 17 N -0.854 5.854 18 C 0.073 3.927 19 H 0.131 0.869 20 C 0.315 3.685 21 N -0.397 5.397 22 O -0.444 6.444 23 C -0.107 4.107 24 C -0.136 4.136 25 C -0.140 4.140 26 C -0.133 4.133 27 C -0.135 4.135 28 C -0.136 4.136 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.258 0.742 37 H 0.239 0.761 38 H 0.235 0.765 39 H 0.139 0.861 40 H 0.163 0.837 41 H 0.169 0.831 42 H 0.168 0.832 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 14.533 1.234 3.705 15.049 hybrid contribution -0.082 -0.820 -1.516 1.725 sum 14.451 0.413 2.189 14.622 Atomic orbital electron populations 1.21906 0.97818 1.00394 0.99300 1.18568 0.92176 0.91595 0.81438 0.94891 1.21546 1.31222 1.12530 0.90079 0.91597 1.25460 0.95231 0.95290 1.01025 1.70021 1.37517 1.23955 1.23954 0.85879 0.79827 0.77987 0.79606 1.22678 1.21442 1.16752 1.57527 1.59804 1.25983 1.40130 1.21344 1.01195 0.81710 1.00287 1.01242 0.72754 0.73005 0.72433 1.93550 1.85981 1.32714 1.86595 1.93518 1.86072 1.78609 1.40780 1.55599 1.33705 1.68054 1.28016 1.19388 0.95862 0.94309 0.83157 0.86928 1.20549 0.74182 0.89825 0.83947 1.43645 1.74213 1.13594 1.08269 1.90648 1.50429 1.23693 1.79652 1.19646 0.93136 0.97335 1.00536 1.21102 0.94149 1.00077 0.98299 1.21424 0.95683 0.96823 1.00044 1.21584 1.00681 0.95101 0.95951 1.21460 0.92594 1.00638 0.98773 1.21299 0.98114 0.94618 0.99563 0.91245 0.95966 0.94151 0.93023 0.93478 0.90767 0.90521 0.74224 0.76115 0.76545 0.86078 0.83680 0.83113 0.83174 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 8.57 71.98 0.62 -5.65 16 2 C 0.27 12.59 2.66 44.24 0.12 12.71 16 3 H 0.03 1.74 6.81 -2.39 -0.02 1.72 16 4 C -0.51 -24.66 7.62 25.60 0.20 -24.47 16 5 H 0.07 3.23 6.40 -2.91 -0.02 3.22 16 6 C 0.03 1.46 5.30 84.66 0.45 1.90 16 7 N -0.91 -47.64 11.39 21.45 0.24 -47.40 16 8 Si 0.94 38.72 29.54 68.60 2.03 40.75 16 9 H -0.30 -13.09 7.11 99.48 0.71 -12.38 16 10 H -0.29 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.24 -8.92 6.17 99.48 0.61 -8.31 16 12 N -0.99 -41.53 3.12 -520.46 -1.62 -43.15 16 13 C 0.10 3.75 10.16 127.77 1.30 5.04 16 14 S 2.80 111.93 6.11 -56.49 -0.35 111.58 16 15 O -1.00 -45.45 15.95 -128.00 -2.04 -47.49 16 16 O -1.01 -41.82 16.76 -128.00 -2.15 -43.96 16 17 N -1.09 -37.05 4.85 -175.69 -0.85 -37.90 16 18 C 0.18 6.03 2.95 43.50 0.13 6.16 16 19 H 0.11 4.04 7.31 -2.39 -0.02 4.02 16 20 C 0.53 18.31 5.70 87.66 0.50 18.81 16 21 N -0.83 -24.18 8.87 -173.53 -1.54 -25.72 16 22 O -0.57 -22.76 16.78 -3.04 -0.05 -22.82 16 23 C -0.10 -2.78 4.94 -19.87 -0.10 -2.88 16 24 C -0.12 -2.80 9.25 22.27 0.21 -2.60 16 25 C -0.12 -2.26 10.05 22.27 0.22 -2.04 16 26 C -0.12 -1.86 10.05 22.27 0.22 -1.64 16 27 C -0.12 -2.06 10.05 22.27 0.22 -1.84 16 28 C -0.12 -2.66 9.67 22.27 0.22 -2.44 16 29 H 0.07 3.52 6.26 -2.39 -0.01 3.51 16 30 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.04 1.79 6.82 -2.39 -0.02 1.77 16 32 H 0.26 13.10 8.31 -92.71 -0.77 12.33 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 2.53 7.03 -2.39 -0.02 2.51 16 35 H 0.08 2.78 6.30 -2.39 -0.02 2.76 16 36 H 0.42 12.47 7.33 -96.73 -0.71 11.77 16 37 H 0.41 9.81 8.83 -92.70 -0.82 8.99 16 38 H 0.40 11.35 7.99 -92.71 -0.74 10.61 16 39 H 0.12 2.81 6.79 -2.91 -0.02 2.79 16 40 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 41 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 43 H 0.13 2.81 8.04 -2.91 -0.02 2.78 16 Total: -1.00 -66.84 365.39 -3.31 -70.15 By element: Atomic # 1 Polarization: 46.17 SS G_CDS: -1.28 Total: 44.89 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 4.30 Total: 1.07 kcal Atomic # 7 Polarization: -150.40 SS G_CDS: -3.77 Total: -154.17 kcal Atomic # 8 Polarization: -110.03 SS G_CDS: -4.24 Total: -114.27 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Atomic # 16 Polarization: 111.93 SS G_CDS: -0.35 Total: 111.58 kcal Total: -66.84 -3.31 -70.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282909040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.802 kcal (2) G-P(sol) polarization free energy of solvation -66.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds