Wall clock time and date at job start Tue Mar 31 2020 23:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.46502 * 119.99711 * 60.00297 * 12 2 1 14 14 S 1.65599 * 120.00127 * 239.99852 * 12 2 1 15 15 O 1.42095 * 106.40120 * 203.53802 * 14 12 2 16 16 O 1.42089 * 106.40564 * 336.46237 * 14 12 2 17 17 N 1.65605 * 107.21223 * 90.00055 * 14 12 2 18 18 C 1.46497 * 120.00101 * 65.00234 * 17 14 12 19 19 H 1.08990 * 109.47268 * 334.99675 * 18 17 14 20 20 C 1.50700 * 109.47250 * 94.99614 * 18 17 14 21 21 N 1.34779 * 120.00158 * 179.97438 * 20 18 17 22 22 O 1.21280 * 120.00154 * 359.97438 * 20 18 17 23 23 C 1.50703 * 109.46976 * 214.99282 * 18 17 14 24 24 C 1.38234 * 120.00233 * 319.73124 * 23 18 17 25 25 C 1.38236 * 120.00055 * 179.80753 * 24 23 18 26 26 C 1.38236 * 119.99850 * 0.39320 * 25 24 23 27 27 C 1.38233 * 119.99957 * 359.86091 * 26 25 24 28 28 C 1.38235 * 120.00350 * 359.94736 * 27 26 25 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 33 33 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 34 34 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 35 35 H 1.09002 * 109.46792 * 329.99948 * 13 12 2 36 36 H 0.97003 * 120.00067 * 244.99407 * 17 14 12 37 37 H 0.97001 * 119.99714 * 0.02562 * 21 20 18 38 38 H 0.97001 * 120.00483 * 179.97438 * 21 20 18 39 39 H 1.08005 * 119.99583 * 359.97438 * 24 23 18 40 40 H 1.07997 * 119.99829 * 180.22526 * 25 24 23 41 41 H 1.07991 * 119.99903 * 179.83249 * 26 25 24 42 42 H 1.08004 * 120.00279 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.00007 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9705 0.1141 2.2861 15 8 3.7119 -0.8790 2.9813 16 8 3.5794 1.1829 1.5749 17 7 1.9607 0.8089 3.3997 18 6 1.1510 -0.0354 4.2816 19 1 0.9877 -1.0035 3.8084 20 6 1.8719 -0.2313 5.5904 21 7 1.3124 -0.9784 6.5627 22 8 2.9556 0.2832 5.7689 23 6 -0.1770 0.6306 4.5344 24 6 -0.2375 1.9964 4.7387 25 6 -1.4561 2.6079 4.9666 26 6 -2.6133 1.8524 4.9984 27 6 -2.5521 0.4858 4.7994 28 6 -1.3340 -0.1252 4.5675 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 0.7093 1.1619 -3.4844 33 1 2.4158 -2.7377 0.9716 34 1 1.6239 -2.2853 2.5001 35 1 0.6905 -2.3002 0.9845 36 1 1.9054 1.7749 3.4682 37 1 0.4459 -1.3902 6.4199 38 1 1.7765 -1.1048 7.4051 39 1 0.6671 2.5862 4.7174 40 1 -1.5038 3.6755 5.1225 41 1 -3.5650 2.3297 5.1792 42 1 -3.4562 -0.1046 4.8247 43 1 -1.2863 -1.1928 4.4116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282909054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:54 Heat of formation + Delta-G solvation = -79.019353 kcal Electronic energy + Delta-G solvation = -29160.999770 eV Core-core repulsion = 25140.271746 eV Total energy + Delta-G solvation = -4020.728024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.33539 -38.75926 -36.61788 -36.20834 -35.17720 -35.13621 -33.78122 -32.58913 -31.22038 -30.80518 -29.12070 -26.79454 -25.62273 -25.13009 -22.88046 -22.32357 -20.80569 -20.58690 -18.91428 -17.94156 -17.67261 -17.25278 -16.85407 -16.48825 -16.20297 -15.62954 -15.43147 -15.10243 -14.69270 -14.46397 -14.32349 -13.90233 -13.59773 -13.47306 -13.20106 -12.90522 -12.81029 -12.71768 -12.04285 -11.73693 -11.71461 -11.45299 -11.33835 -11.31226 -11.27086 -11.13669 -10.98075 -10.80323 -10.70093 -10.42197 -10.26960 -10.01628 -9.77778 -9.46969 -9.23802 -9.11774 -8.90353 -8.45450 -7.99984 -6.06755 -4.13140 1.01695 1.19054 1.21704 2.55185 3.25445 3.28278 3.36688 3.39558 3.42179 3.73429 4.11460 4.37506 4.41932 4.53121 4.75151 4.84790 4.85654 4.92107 4.99425 5.24945 5.27368 5.32090 5.51948 5.61746 5.76763 5.82857 6.05305 6.22174 6.29247 6.31200 6.34963 6.58727 6.66596 6.75331 6.77342 6.78312 6.99395 7.03960 7.20350 7.46498 7.63623 7.79207 8.04636 8.17245 8.27896 8.89397 9.52730 10.98993 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.004309 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.606725 B = 6496.737431 C = 7620.056453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.267 3.733 3 H 0.059 0.941 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.990 5.990 13 C 0.107 3.893 14 S 2.778 3.222 15 O -0.985 6.985 16 O -0.968 6.968 17 N -1.107 6.107 18 C 0.185 3.815 19 H 0.116 0.884 20 C 0.509 3.491 21 N -0.853 5.853 22 O -0.517 6.517 23 C -0.089 4.089 24 C -0.100 4.100 25 C -0.114 4.114 26 C -0.115 4.115 27 C -0.115 4.115 28 C -0.107 4.107 29 H 0.012 0.988 30 H 0.033 0.967 31 H 0.092 0.908 32 H 0.262 0.738 33 H 0.052 0.948 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.416 0.584 37 H 0.400 0.600 38 H 0.402 0.598 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.344 -2.105 17.856 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.833 5.833 13 C -0.039 4.039 14 S 2.786 3.214 15 O -0.968 6.968 16 O -0.952 6.952 17 N -0.864 5.864 18 C 0.072 3.928 19 H 0.134 0.866 20 C 0.290 3.710 21 N -0.418 5.418 22 O -0.391 6.391 23 C -0.091 4.091 24 C -0.118 4.118 25 C -0.132 4.132 26 C -0.133 4.133 27 C -0.133 4.133 28 C -0.126 4.126 29 H 0.031 0.969 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.250 0.750 37 H 0.228 0.772 38 H 0.233 0.767 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.700 -1.704 17.610 19.716 hybrid contribution -0.475 -0.312 -0.634 0.851 sum -9.176 -2.016 16.976 19.402 Atomic orbital electron populations 1.22101 0.98157 0.99623 1.00718 1.18754 0.91333 0.93029 0.80404 0.92320 1.21370 1.31483 1.12988 0.90000 0.91879 1.24902 0.94974 0.95008 0.98996 1.69866 1.36647 1.22709 1.23654 0.86449 0.78585 0.79694 0.82724 1.19726 1.21028 1.20903 1.57776 1.70142 1.19597 1.35777 1.21207 1.02082 0.82419 0.98207 1.02127 0.73526 0.73424 0.72306 1.93565 1.68534 1.60526 1.74202 1.93617 1.73811 1.56060 1.71702 1.56193 1.61746 1.17340 1.51087 1.19363 0.88099 0.95632 0.89681 0.86609 1.20973 0.85939 0.78154 0.85904 1.43767 1.24716 1.54839 1.18521 1.90757 1.20371 1.47613 1.80318 1.19595 0.93119 0.94471 1.01866 1.20976 0.98394 0.93994 0.98484 1.21145 0.92314 1.00071 0.99684 1.21214 0.98372 0.94226 0.99506 1.21113 0.97514 0.94958 0.99687 1.21005 0.91784 0.99969 0.99825 0.96914 0.94829 0.88923 0.92775 0.92927 0.93847 0.90700 0.74976 0.77207 0.76723 0.85804 0.85752 0.85958 0.85666 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.95 37.16 0.33 -2.90 16 2 C 0.27 6.48 2.62 -69.08 -0.18 6.29 16 3 H 0.06 1.59 6.91 -51.93 -0.36 1.24 16 4 C -0.52 -13.89 8.37 -34.44 -0.29 -14.18 16 5 H 0.06 1.69 7.65 -52.49 -0.40 1.29 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.64 11.32 55.43 0.63 -24.02 16 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.99 -20.28 3.12 -115.85 -0.36 -20.64 16 13 C 0.11 1.82 9.32 59.85 0.56 2.38 16 14 S 2.78 56.98 6.00 -107.50 -0.65 56.33 16 15 O -0.99 -21.64 16.97 -57.18 -0.97 -22.61 16 16 O -0.97 -23.56 16.70 -57.18 -0.95 -24.52 16 17 N -1.11 -17.75 4.97 -6.89 -0.03 -17.78 16 18 C 0.19 2.41 2.80 -70.23 -0.20 2.21 16 19 H 0.12 1.35 5.97 -51.93 -0.31 1.04 16 20 C 0.51 6.93 7.47 -10.98 -0.08 6.85 16 21 N -0.85 -7.41 8.77 31.22 0.27 -7.14 16 22 O -0.52 -9.37 17.27 5.56 0.10 -9.27 16 23 C -0.09 -0.97 4.74 -104.62 -0.50 -1.47 16 24 C -0.10 -1.10 9.15 -39.58 -0.36 -1.46 16 25 C -0.11 -1.08 10.05 -39.58 -0.40 -1.47 16 26 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 27 C -0.11 -0.94 10.05 -39.58 -0.40 -1.34 16 28 C -0.11 -0.95 9.51 -39.58 -0.38 -1.33 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.03 0.68 6.66 -51.93 -0.35 0.34 16 31 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.59 6.17 -51.92 -0.32 0.27 16 35 H 0.07 1.20 6.43 -51.93 -0.33 0.86 16 36 H 0.42 6.09 7.10 -34.48 -0.24 5.84 16 37 H 0.40 2.24 8.55 -40.82 -0.35 1.89 16 38 H 0.40 2.99 8.93 -40.82 -0.36 2.62 16 39 H 0.12 1.34 6.84 -52.48 -0.36 0.98 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 43 H 0.13 0.82 8.04 -52.49 -0.42 0.40 16 LS Contribution 368.43 15.07 5.55 5.55 Total: -1.00 -36.54 368.43 -9.19 -45.73 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.37 Total: 8.44 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.38 Total: -6.16 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: 0.51 Total: -69.58 kcal Atomic # 8 Polarization: -54.57 SS G_CDS: -1.83 Total: -56.40 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 56.98 SS G_CDS: -0.65 Total: 56.33 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.54 -9.19 -45.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282909054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.285 kcal (2) G-P(sol) polarization free energy of solvation -36.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds