Wall clock time and date at job start Tue Mar 31 2020 23:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.46502 * 119.99711 * 60.00297 * 12 2 1 14 14 S 1.65599 * 120.00127 * 239.99852 * 12 2 1 15 15 O 1.42095 * 106.40120 * 203.53802 * 14 12 2 16 16 O 1.42089 * 106.40564 * 336.46237 * 14 12 2 17 17 N 1.65605 * 107.21223 * 90.00055 * 14 12 2 18 18 C 1.46497 * 120.00101 * 65.00234 * 17 14 12 19 19 H 1.08990 * 109.47268 * 334.99675 * 18 17 14 20 20 C 1.50700 * 109.47250 * 94.99614 * 18 17 14 21 21 N 1.34779 * 120.00158 * 179.97438 * 20 18 17 22 22 O 1.21280 * 120.00154 * 359.97438 * 20 18 17 23 23 C 1.50703 * 109.46976 * 214.99282 * 18 17 14 24 24 C 1.38234 * 120.00233 * 319.73124 * 23 18 17 25 25 C 1.38236 * 120.00055 * 179.80753 * 24 23 18 26 26 C 1.38236 * 119.99850 * 0.39320 * 25 24 23 27 27 C 1.38233 * 119.99957 * 359.86091 * 26 25 24 28 28 C 1.38235 * 120.00350 * 359.94736 * 27 26 25 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 33 33 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 34 34 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 35 35 H 1.09002 * 109.46792 * 329.99948 * 13 12 2 36 36 H 0.97003 * 120.00067 * 244.99407 * 17 14 12 37 37 H 0.97001 * 119.99714 * 0.02562 * 21 20 18 38 38 H 0.97001 * 120.00483 * 179.97438 * 21 20 18 39 39 H 1.08005 * 119.99583 * 359.97438 * 24 23 18 40 40 H 1.07997 * 119.99829 * 180.22526 * 25 24 23 41 41 H 1.07991 * 119.99903 * 179.83249 * 26 25 24 42 42 H 1.08004 * 120.00279 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.00007 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9705 0.1141 2.2861 15 8 3.7119 -0.8790 2.9813 16 8 3.5794 1.1829 1.5749 17 7 1.9607 0.8089 3.3997 18 6 1.1510 -0.0354 4.2816 19 1 0.9877 -1.0035 3.8084 20 6 1.8719 -0.2313 5.5904 21 7 1.3124 -0.9784 6.5627 22 8 2.9556 0.2832 5.7689 23 6 -0.1770 0.6306 4.5344 24 6 -0.2375 1.9964 4.7387 25 6 -1.4561 2.6079 4.9666 26 6 -2.6133 1.8524 4.9984 27 6 -2.5521 0.4858 4.7994 28 6 -1.3340 -0.1252 4.5675 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 0.7093 1.1619 -3.4844 33 1 2.4158 -2.7377 0.9716 34 1 1.6239 -2.2853 2.5001 35 1 0.6905 -2.3002 0.9845 36 1 1.9054 1.7749 3.4682 37 1 0.4459 -1.3902 6.4199 38 1 1.7765 -1.1048 7.4051 39 1 0.6671 2.5862 4.7174 40 1 -1.5038 3.6755 5.1225 41 1 -3.5650 2.3297 5.1792 42 1 -3.4562 -0.1046 4.8247 43 1 -1.2863 -1.1928 4.4116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282909054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:53 Heat of formation + Delta-G solvation = -109.077014 kcal Electronic energy + Delta-G solvation = -29162.303168 eV Core-core repulsion = 25140.271746 eV Total energy + Delta-G solvation = -4022.031422 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.27024 -39.61169 -38.36289 -37.92708 -36.92830 -36.24930 -34.74005 -34.52723 -31.97092 -31.61261 -30.91731 -27.78743 -27.27040 -26.97946 -23.59607 -23.12340 -22.59523 -21.55763 -20.37871 -19.07232 -18.95295 -18.61567 -18.21696 -18.08269 -17.30503 -17.09052 -16.60646 -16.34546 -16.02575 -15.52270 -15.36435 -15.18945 -14.99860 -14.68732 -14.52877 -14.23752 -13.80837 -13.74496 -13.62514 -13.41595 -13.22357 -13.14321 -13.07298 -12.92865 -12.78335 -12.57867 -12.30393 -12.14788 -12.08273 -11.95310 -11.88014 -11.76841 -11.11984 -10.68859 -10.61467 -10.49136 -9.79738 -9.74418 -9.62986 -8.10469 -6.23772 -0.44798 0.34906 0.52515 1.42054 1.45627 1.52475 1.55744 1.94174 2.38277 2.45626 2.63364 2.94123 3.18122 3.39699 3.44523 3.62389 3.93387 4.01152 4.16055 4.19518 4.34613 4.40293 4.64286 4.64996 4.76343 4.84040 5.01829 5.04258 5.05839 5.16903 5.17714 5.20578 5.56052 5.59799 5.63097 5.65255 5.67289 5.84722 5.88453 5.91633 6.10418 6.16431 6.31926 6.39441 6.83963 7.29045 7.45240 8.93895 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.004309 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.606725 B = 6496.737431 C = 7620.056453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.273 3.727 3 H 0.020 0.980 4 C -0.537 4.537 5 H 0.057 0.943 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.954 3.046 9 H -0.270 1.270 10 H -0.273 1.273 11 H -0.287 1.287 12 N -0.991 5.991 13 C 0.097 3.903 14 S 2.793 3.207 15 O -1.002 7.002 16 O -1.016 7.016 17 N -1.100 6.100 18 C 0.179 3.821 19 H 0.133 0.867 20 C 0.505 3.495 21 N -0.827 5.827 22 O -0.572 6.572 23 C -0.102 4.102 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.116 4.116 27 C -0.114 4.114 28 C -0.106 4.106 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.264 0.736 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.420 0.580 37 H 0.418 0.582 38 H 0.411 0.589 39 H 0.112 0.888 40 H 0.135 0.865 41 H 0.145 0.855 42 H 0.154 0.846 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.903 -3.915 18.862 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.168 3.832 3 H 0.038 0.962 4 C -0.576 4.576 5 H 0.075 0.925 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.780 3.220 9 H -0.195 1.195 10 H -0.198 1.198 11 H -0.213 1.213 12 N -0.834 5.834 13 C -0.048 4.048 14 S 2.802 3.198 15 O -0.985 6.985 16 O -1.000 7.000 17 N -0.860 5.860 18 C 0.068 3.932 19 H 0.150 0.850 20 C 0.287 3.713 21 N -0.392 5.392 22 O -0.451 6.451 23 C -0.103 4.103 24 C -0.141 4.141 25 C -0.143 4.143 26 C -0.134 4.134 27 C -0.132 4.132 28 C -0.124 4.124 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.256 0.744 37 H 0.250 0.750 38 H 0.243 0.757 39 H 0.130 0.870 40 H 0.153 0.847 41 H 0.163 0.837 42 H 0.171 0.829 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.305 -3.568 18.652 22.100 hybrid contribution 0.243 0.258 -0.824 0.897 sum -11.062 -3.309 17.828 21.241 Atomic orbital electron populations 1.21864 0.96220 1.00504 1.00429 1.18442 0.92624 0.91137 0.80959 0.96200 1.21672 1.31568 1.12998 0.91401 0.92513 1.25611 0.95226 0.95697 1.01586 1.69981 1.37350 1.23645 1.24255 0.85567 0.78298 0.78564 0.79546 1.19462 1.19786 1.21278 1.57577 1.69951 1.21025 1.34879 1.21492 1.02440 0.80105 1.00744 1.01368 0.73581 0.72554 0.72275 1.93534 1.69462 1.61093 1.74408 1.93543 1.75571 1.57664 1.73239 1.55747 1.61665 1.17884 1.50657 1.19649 0.88613 0.96002 0.88943 0.84966 1.21134 0.85294 0.78096 0.86799 1.43531 1.25124 1.52861 1.17716 1.90740 1.22733 1.50163 1.81434 1.19478 0.92618 0.94510 1.03742 1.21062 0.98781 0.94439 0.99806 1.21355 0.92224 1.00958 0.99789 1.21574 0.98832 0.94690 0.98320 1.21493 0.98270 0.95055 0.98401 1.21329 0.91045 1.01301 0.98727 0.94618 0.93223 0.91685 0.92668 0.93838 0.90245 0.89254 0.74359 0.75036 0.75677 0.86994 0.84683 0.83741 0.82878 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.64 8.95 71.98 0.64 -4.99 16 2 C 0.27 13.30 2.62 44.25 0.12 13.42 16 3 H 0.02 1.13 6.91 -2.39 -0.02 1.12 16 4 C -0.54 -28.94 8.37 25.60 0.21 -28.72 16 5 H 0.06 3.05 7.65 -2.91 -0.02 3.03 16 6 C 0.02 1.01 5.30 84.65 0.45 1.46 16 7 N -0.91 -51.05 11.32 21.45 0.24 -50.81 16 8 Si 0.95 43.21 29.54 68.60 2.03 45.23 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 12 N -0.99 -40.29 3.12 -520.44 -1.62 -41.91 16 13 C 0.10 3.13 9.32 127.77 1.19 4.32 16 14 S 2.79 116.46 6.00 -56.49 -0.34 116.13 16 15 O -1.00 -44.21 16.97 -128.00 -2.17 -46.38 16 16 O -1.02 -51.73 16.70 -128.00 -2.14 -53.86 16 17 N -1.10 -35.48 4.97 -175.70 -0.87 -36.35 16 18 C 0.18 4.41 2.80 43.50 0.12 4.54 16 19 H 0.13 2.72 5.97 -2.39 -0.01 2.70 16 20 C 0.50 13.23 7.47 87.66 0.66 13.88 16 21 N -0.83 -12.49 8.77 -173.53 -1.52 -14.02 16 22 O -0.57 -20.96 17.27 -3.03 -0.05 -21.02 16 23 C -0.10 -2.02 4.74 -19.86 -0.09 -2.12 16 24 C -0.12 -2.60 9.15 22.27 0.20 -2.39 16 25 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 26 C -0.12 -1.61 10.05 22.27 0.22 -1.38 16 27 C -0.11 -1.41 10.05 22.27 0.22 -1.18 16 28 C -0.11 -1.48 9.51 22.27 0.21 -1.27 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.93 6.66 -2.39 -0.02 1.92 16 31 H 0.06 3.20 6.07 -2.38 -0.01 3.19 16 32 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.95 6.17 -2.38 -0.01 1.93 16 35 H 0.09 2.60 6.43 -2.39 -0.02 2.59 16 36 H 0.42 12.83 7.10 -96.74 -0.69 12.14 16 37 H 0.42 3.27 8.55 -92.71 -0.79 2.48 16 38 H 0.41 5.26 8.93 -92.71 -0.83 4.43 16 39 H 0.11 2.52 6.84 -2.91 -0.02 2.50 16 40 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 41 H 0.14 1.31 8.06 -2.92 -0.02 1.29 16 42 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 43 H 0.16 1.22 8.04 -2.91 -0.02 1.20 16 Total: -1.00 -81.39 368.43 -3.29 -84.68 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -1.22 Total: 24.71 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 4.38 Total: -6.39 kcal Atomic # 7 Polarization: -139.31 SS G_CDS: -3.78 Total: -143.09 kcal Atomic # 8 Polarization: -116.90 SS G_CDS: -4.36 Total: -121.26 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 116.46 SS G_CDS: -0.34 Total: 116.13 kcal Total: -81.39 -3.29 -84.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282909054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.399 kcal (2) G-P(sol) polarization free energy of solvation -81.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds