Wall clock time and date at job start Tue Mar 31 2020 23:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46987 * 2 1 4 4 C 1.50692 * 109.47267 * 120.00602 * 2 1 3 5 5 H 1.08003 * 120.00316 * 114.36808 * 4 2 1 6 6 C 1.37886 * 119.99877 * 294.36601 * 4 2 1 7 7 N 1.31510 * 119.99961 * 156.89610 * 6 4 2 8 8 Si 1.86796 * 119.99750 * 337.17309 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.72455 * 8 6 4 10 10 H 1.48502 * 109.47231 * 299.72156 * 8 6 4 11 11 H 1.48498 * 109.47554 * 59.72235 * 8 6 4 12 12 N 1.46509 * 109.47062 * 240.00243 * 2 1 3 13 13 C 1.46502 * 119.99604 * 300.00516 * 12 2 1 14 14 S 1.65598 * 119.99835 * 119.99654 * 12 2 1 15 15 O 1.42102 * 106.40027 * 203.53979 * 14 12 2 16 16 O 1.42091 * 106.40355 * 336.46171 * 14 12 2 17 17 N 1.65598 * 107.21635 * 90.00560 * 14 12 2 18 18 C 1.46506 * 120.00181 * 64.99320 * 17 14 12 19 19 C 1.50702 * 109.46805 * 165.00281 * 18 17 14 20 20 C 1.38382 * 119.92443 * 269.72915 * 19 18 17 21 21 C 1.38342 * 120.28885 * 179.72760 * 20 19 18 22 22 C 1.37975 * 120.14394 * 0.54971 * 21 20 19 23 23 C 1.39556 * 119.85295 * 359.72261 * 22 21 20 24 24 C 1.47851 * 120.14179 * 180.02562 * 23 22 21 25 25 N 1.34774 * 119.99963 * 359.97438 * 24 23 22 26 26 O 1.21553 * 119.99627 * 179.97438 * 24 23 22 27 27 C 1.37936 * 119.92866 * 90.00335 * 19 18 17 28 28 H 1.09000 * 109.47483 * 173.29600 * 1 2 3 29 29 H 1.09002 * 109.47176 * 293.29860 * 1 2 3 30 30 H 1.09005 * 109.47375 * 53.29697 * 1 2 3 31 31 H 0.97006 * 120.00339 * 355.20022 * 7 6 4 32 32 H 1.08992 * 109.47772 * 90.00121 * 13 12 2 33 33 H 1.09003 * 109.46297 * 209.99546 * 13 12 2 34 34 H 1.08994 * 109.47613 * 329.99192 * 13 12 2 35 35 H 0.96998 * 120.00072 * 245.00203 * 17 14 12 36 36 H 1.08997 * 109.47104 * 285.00272 * 18 17 14 37 37 H 1.09000 * 109.46515 * 45.00774 * 18 17 14 38 38 H 1.07995 * 119.85754 * 359.97438 * 20 19 18 39 39 H 1.08002 * 119.92572 * 180.25022 * 21 20 19 40 40 H 1.08002 * 120.07314 * 179.74803 * 22 21 20 41 41 H 0.96993 * 120.00361 * 359.97438 * 25 24 23 42 42 H 0.97002 * 119.99553 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.07228 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5762 -1.6386 1.1338 6 6 1.7977 -0.1757 2.4794 7 7 1.8081 -0.9531 3.5401 8 14 1.4573 1.6517 2.6639 9 1 1.2326 1.9711 4.0966 10 1 2.6208 2.4253 2.1609 11 1 0.2479 2.0116 1.8810 12 7 2.0183 -0.6906 -1.1963 13 6 1.6642 -2.0932 -1.4281 14 16 2.9703 0.1143 -2.2863 15 8 2.8226 -0.5645 -3.5260 16 8 2.6902 1.4973 -2.1193 17 7 4.5436 -0.1042 -1.8182 18 6 5.1356 -1.4441 -1.8417 19 6 6.6347 -1.3328 -1.7354 20 6 7.4025 -1.2309 -2.8821 21 6 8.7788 -1.1227 -2.7931 22 6 9.3957 -1.1272 -1.5589 23 6 8.6277 -1.2354 -0.3988 24 6 9.2821 -1.2403 0.9270 25 7 10.6232 -1.1406 1.0170 26 8 8.6106 -1.3341 1.9359 27 6 7.2390 -1.3385 -0.4954 28 1 -0.3634 -1.0206 -0.1200 29 1 -0.3634 0.4065 0.9439 30 1 -0.3634 0.6142 -0.8239 31 1 1.9114 -1.9121 3.4376 32 1 0.7375 -2.1443 -1.9995 33 1 2.4627 -2.5818 -1.9866 34 1 1.5294 -2.5969 -0.4711 35 1 5.0733 0.6550 -1.5283 36 1 4.7539 -2.0248 -1.0020 37 1 4.8735 -1.9407 -2.7760 38 1 6.9249 -1.2318 -3.8507 39 1 9.3720 -1.0394 -3.6917 40 1 10.4706 -1.0468 -1.4909 41 1 11.1590 -1.0661 0.2120 42 1 11.0524 -1.1435 1.8868 43 1 6.6389 -1.4221 0.3987 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282938047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:25 Heat of formation + Delta-G solvation = -87.724793 kcal Electronic energy + Delta-G solvation = -28096.439831 eV Core-core repulsion = 24075.334311 eV Total energy + Delta-G solvation = -4021.105520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.34049 -38.60385 -36.83481 -36.34309 -35.39671 -35.30261 -33.95042 -32.58376 -31.26200 -31.01440 -29.78731 -25.88007 -25.59487 -24.64919 -24.35801 -22.03710 -20.71288 -20.47519 -18.92917 -18.36865 -17.55830 -17.25066 -17.08460 -16.75189 -16.27029 -16.02862 -15.18324 -15.09520 -14.91664 -14.61875 -13.98510 -13.91766 -13.72197 -13.38197 -13.32264 -13.03279 -12.87304 -12.66763 -12.10529 -12.01679 -11.97936 -11.76664 -11.70911 -11.63170 -11.52311 -11.31479 -11.16996 -10.75766 -10.44593 -10.23573 -10.03571 -9.95424 -9.78596 -9.37277 -9.22100 -9.18753 -9.14070 -8.40440 -8.04497 -6.49426 -4.11936 0.58186 0.96052 1.24216 2.65621 3.23676 3.35753 3.41562 3.48507 3.62075 3.68536 4.03022 4.38175 4.48185 4.50893 4.58698 4.78707 4.89135 5.04351 5.12965 5.16451 5.33681 5.38023 5.48382 5.70237 5.76039 5.92850 6.04670 6.05270 6.08237 6.16756 6.33726 6.40486 6.49723 6.50661 6.58959 6.63530 6.69107 6.98480 7.06255 7.16929 7.32949 7.51155 7.98434 8.03889 8.34192 8.86399 9.53699 10.86031 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010372 B = 0.004234 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.940034 B = 6611.136582 C = 8473.275215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.247 3.753 3 H 0.047 0.953 4 C -0.617 4.617 5 H 0.066 0.934 6 C 0.044 3.956 7 N -0.891 5.891 8 Si 1.023 2.977 9 H -0.283 1.283 10 H -0.279 1.279 11 H -0.274 1.274 12 N -0.984 5.984 13 C 0.105 3.895 14 S 2.783 3.217 15 O -0.995 6.995 16 O -0.982 6.982 17 N -1.123 6.123 18 C 0.162 3.838 19 C -0.100 4.100 20 C -0.075 4.075 21 C -0.131 4.131 22 C -0.084 4.084 23 C -0.142 4.142 24 C 0.560 3.440 25 N -0.854 5.854 26 O -0.528 6.528 27 C -0.038 4.038 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.026 0.974 31 H 0.270 0.730 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.415 0.585 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.399 0.601 42 H 0.405 0.595 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.090 -2.296 -12.441 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.142 3.858 3 H 0.064 0.936 4 C -0.656 4.656 5 H 0.084 0.916 6 C -0.164 4.164 7 N -0.523 5.523 8 Si 0.851 3.149 9 H -0.208 1.208 10 H -0.205 1.205 11 H -0.200 1.200 12 N -0.826 5.826 13 C -0.041 4.041 14 S 2.792 3.208 15 O -0.978 6.978 16 O -0.966 6.966 17 N -0.882 5.882 18 C 0.036 3.964 19 C -0.101 4.101 20 C -0.094 4.094 21 C -0.149 4.149 22 C -0.103 4.103 23 C -0.146 4.146 24 C 0.346 3.654 25 N -0.419 5.419 26 O -0.404 6.404 27 C -0.057 4.057 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.248 0.752 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.228 0.772 42 H 0.236 0.764 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 14.794 -0.867 -11.590 18.814 hybrid contribution 1.258 -1.104 -0.639 1.791 sum 16.052 -1.971 -12.229 20.276 Atomic orbital electron populations 1.22391 0.98410 1.00434 1.00034 1.18958 0.91331 0.92776 0.82707 0.93587 1.22112 1.41394 1.11352 0.90707 0.91578 1.25577 0.93272 1.05489 0.92020 1.70852 1.43131 1.06431 1.31903 0.84342 0.77803 0.76353 0.76444 1.20828 1.20540 1.19956 1.57495 1.64557 1.21455 1.39122 1.21237 0.99083 0.81738 1.02049 1.01793 0.72589 0.73094 0.73370 1.93546 1.85985 1.76320 1.41994 1.93585 1.83639 1.32495 1.86914 1.56056 1.32099 1.14608 1.85450 1.20126 0.88955 0.84337 1.03024 1.19878 0.95531 1.01754 0.92965 1.21390 0.93784 0.95623 0.98563 1.21073 0.94740 1.01632 0.97480 1.21275 0.99318 0.97675 0.92042 1.19871 0.94560 1.07415 0.92710 1.18321 0.82324 0.75694 0.89041 1.43740 1.07435 1.78099 1.12580 1.90898 1.63720 1.48476 1.37355 1.21383 0.93273 0.92724 0.98329 0.93173 0.92060 0.95492 0.91969 0.93713 0.93057 0.89983 0.75225 0.90180 0.89697 0.85068 0.85202 0.85717 0.77176 0.76430 0.83760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.01 37.16 0.33 -3.01 16 2 C 0.25 5.74 2.22 -69.08 -0.15 5.58 16 3 H 0.05 1.13 5.49 -51.93 -0.29 0.84 16 4 C -0.62 -16.11 8.30 -34.44 -0.29 -16.40 16 5 H 0.07 1.81 7.38 -52.48 -0.39 1.42 16 6 C 0.04 1.23 5.20 -17.82 -0.09 1.13 16 7 N -0.89 -26.28 13.70 55.43 0.76 -25.52 16 8 Si 1.02 24.83 26.44 -169.99 -4.49 20.34 16 9 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.19 6.12 56.52 0.35 -5.84 16 12 N -0.98 -19.63 3.12 -115.86 -0.36 -19.99 16 13 C 0.11 1.81 9.15 59.85 0.55 2.36 16 14 S 2.78 52.03 6.09 -107.50 -0.66 51.38 16 15 O -1.00 -19.14 16.68 -57.17 -0.95 -20.10 16 16 O -0.98 -21.26 16.70 -57.17 -0.95 -22.22 16 17 N -1.12 -17.34 6.05 -11.65 -0.07 -17.41 16 18 C 0.16 2.16 6.37 -5.19 -0.03 2.12 16 19 C -0.10 -1.19 5.27 -104.68 -0.55 -1.75 16 20 C -0.07 -0.72 9.69 -39.49 -0.38 -1.11 16 21 C -0.13 -1.04 10.03 -39.64 -0.40 -1.44 16 22 C -0.08 -0.68 9.54 -39.19 -0.37 -1.05 16 23 C -0.14 -1.63 5.87 -104.97 -0.62 -2.25 16 24 C 0.56 6.98 8.05 -12.33 -0.10 6.88 16 25 N -0.85 -6.29 8.82 30.53 0.27 -6.02 16 26 O -0.53 -9.29 17.18 5.32 0.09 -9.20 16 27 C -0.04 -0.50 9.24 -39.19 -0.36 -0.86 16 28 H 0.05 1.03 7.45 -51.93 -0.39 0.64 16 29 H 0.06 1.38 5.44 -51.93 -0.28 1.10 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.27 7.91 8.73 -40.82 -0.36 7.55 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 34 H 0.08 1.49 6.92 -51.93 -0.36 1.14 16 35 H 0.41 5.98 8.64 -34.47 -0.30 5.68 16 36 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 37 H 0.08 1.02 7.69 -51.93 -0.40 0.62 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.13 0.56 6.41 -52.49 -0.34 0.22 16 41 H 0.40 1.59 6.86 -40.82 -0.28 1.31 16 42 H 0.40 2.55 8.93 -40.82 -0.36 2.18 16 43 H 0.14 2.24 7.65 -52.48 -0.40 1.84 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -35.83 368.93 -8.78 -44.61 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.50 Total: 8.34 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -2.47 Total: -9.77 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: 0.60 Total: -68.94 kcal Atomic # 8 Polarization: -49.70 SS G_CDS: -1.82 Total: -51.51 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -4.49 Total: 20.34 kcal Atomic # 16 Polarization: 52.03 SS G_CDS: -0.66 Total: 51.38 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.83 -8.78 -44.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282938047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.117 kcal (2) G-P(sol) polarization free energy of solvation -35.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds