Wall clock time and date at job start Tue Mar 31 2020 23:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46987 * 2 1 4 4 C 1.50692 * 109.47267 * 120.00602 * 2 1 3 5 5 H 1.08003 * 120.00316 * 114.36808 * 4 2 1 6 6 C 1.37886 * 119.99877 * 294.36601 * 4 2 1 7 7 N 1.31510 * 119.99961 * 156.89610 * 6 4 2 8 8 Si 1.86796 * 119.99750 * 337.17309 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.72455 * 8 6 4 10 10 H 1.48502 * 109.47231 * 299.72156 * 8 6 4 11 11 H 1.48498 * 109.47554 * 59.72235 * 8 6 4 12 12 N 1.46509 * 109.47062 * 240.00243 * 2 1 3 13 13 C 1.46502 * 119.99604 * 300.00516 * 12 2 1 14 14 S 1.65598 * 119.99835 * 119.99654 * 12 2 1 15 15 O 1.42102 * 106.40027 * 203.53979 * 14 12 2 16 16 O 1.42091 * 106.40355 * 336.46171 * 14 12 2 17 17 N 1.65598 * 107.21635 * 90.00560 * 14 12 2 18 18 C 1.46506 * 120.00181 * 64.99320 * 17 14 12 19 19 C 1.50702 * 109.46805 * 165.00281 * 18 17 14 20 20 C 1.38382 * 119.92443 * 269.72915 * 19 18 17 21 21 C 1.38342 * 120.28885 * 179.72760 * 20 19 18 22 22 C 1.37975 * 120.14394 * 0.54971 * 21 20 19 23 23 C 1.39556 * 119.85295 * 359.72261 * 22 21 20 24 24 C 1.47851 * 120.14179 * 180.02562 * 23 22 21 25 25 N 1.34774 * 119.99963 * 359.97438 * 24 23 22 26 26 O 1.21553 * 119.99627 * 179.97438 * 24 23 22 27 27 C 1.37936 * 119.92866 * 90.00335 * 19 18 17 28 28 H 1.09000 * 109.47483 * 173.29600 * 1 2 3 29 29 H 1.09002 * 109.47176 * 293.29860 * 1 2 3 30 30 H 1.09005 * 109.47375 * 53.29697 * 1 2 3 31 31 H 0.97006 * 120.00339 * 355.20022 * 7 6 4 32 32 H 1.08992 * 109.47772 * 90.00121 * 13 12 2 33 33 H 1.09003 * 109.46297 * 209.99546 * 13 12 2 34 34 H 1.08994 * 109.47613 * 329.99192 * 13 12 2 35 35 H 0.96998 * 120.00072 * 245.00203 * 17 14 12 36 36 H 1.08997 * 109.47104 * 285.00272 * 18 17 14 37 37 H 1.09000 * 109.46515 * 45.00774 * 18 17 14 38 38 H 1.07995 * 119.85754 * 359.97438 * 20 19 18 39 39 H 1.08002 * 119.92572 * 180.25022 * 21 20 19 40 40 H 1.08002 * 120.07314 * 179.74803 * 22 21 20 41 41 H 0.96993 * 120.00361 * 359.97438 * 25 24 23 42 42 H 0.97002 * 119.99553 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.07228 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5762 -1.6386 1.1338 6 6 1.7977 -0.1757 2.4794 7 7 1.8081 -0.9531 3.5401 8 14 1.4573 1.6517 2.6639 9 1 1.2326 1.9711 4.0966 10 1 2.6208 2.4253 2.1609 11 1 0.2479 2.0116 1.8810 12 7 2.0183 -0.6906 -1.1963 13 6 1.6642 -2.0932 -1.4281 14 16 2.9703 0.1143 -2.2863 15 8 2.8226 -0.5645 -3.5260 16 8 2.6902 1.4973 -2.1193 17 7 4.5436 -0.1042 -1.8182 18 6 5.1356 -1.4441 -1.8417 19 6 6.6347 -1.3328 -1.7354 20 6 7.4025 -1.2309 -2.8821 21 6 8.7788 -1.1227 -2.7931 22 6 9.3957 -1.1272 -1.5589 23 6 8.6277 -1.2354 -0.3988 24 6 9.2821 -1.2403 0.9270 25 7 10.6232 -1.1406 1.0170 26 8 8.6106 -1.3341 1.9359 27 6 7.2390 -1.3385 -0.4954 28 1 -0.3634 -1.0206 -0.1200 29 1 -0.3634 0.4065 0.9439 30 1 -0.3634 0.6142 -0.8239 31 1 1.9114 -1.9121 3.4376 32 1 0.7375 -2.1443 -1.9995 33 1 2.4627 -2.5818 -1.9866 34 1 1.5294 -2.5969 -0.4711 35 1 5.0733 0.6550 -1.5283 36 1 4.7539 -2.0248 -1.0020 37 1 4.8735 -1.9407 -2.7760 38 1 6.9249 -1.2318 -3.8507 39 1 9.3720 -1.0394 -3.6917 40 1 10.4706 -1.0468 -1.4909 41 1 11.1590 -1.0661 0.2120 42 1 11.0524 -1.1435 1.8868 43 1 6.6389 -1.4221 0.3987 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282938047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:24 Heat of formation + Delta-G solvation = -118.377699 kcal Electronic energy + Delta-G solvation = -28097.769041 eV Core-core repulsion = 24075.334311 eV Total energy + Delta-G solvation = -4022.434730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.22573 -39.54450 -38.41280 -38.05167 -36.97304 -36.41116 -34.86038 -34.61950 -32.05619 -31.94681 -31.58275 -27.30472 -26.75249 -26.62899 -25.21804 -22.86244 -22.48556 -21.40553 -20.42156 -19.51518 -19.26305 -18.75024 -18.45717 -17.82627 -17.38707 -17.01741 -16.51276 -16.09455 -15.91680 -15.77634 -15.55635 -15.40326 -15.08251 -14.78382 -14.64106 -14.31080 -14.05605 -13.94743 -13.63299 -13.54685 -13.43252 -13.27517 -13.23148 -13.13921 -13.01271 -12.65383 -12.46830 -12.24812 -12.07460 -11.88117 -11.67674 -11.26400 -11.22317 -10.81017 -10.62837 -10.40327 -9.99700 -9.98920 -9.80925 -8.67858 -6.30371 -0.43618 -0.19014 0.29162 1.46799 1.51317 1.68118 1.74022 1.96851 2.45876 2.47177 2.53319 2.83524 3.03087 3.32968 3.55967 3.79118 3.85811 3.93834 4.06346 4.22071 4.26972 4.37283 4.47917 4.58527 4.64312 4.69764 4.77801 4.82677 4.85071 4.92316 4.96491 5.08623 5.24014 5.31004 5.34611 5.49525 5.51859 5.70636 5.78847 5.87198 5.98418 6.02409 6.11329 6.37729 6.67338 7.24680 7.41104 8.65454 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010372 B = 0.004234 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.940034 B = 6611.136582 C = 8473.275215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.247 3.753 3 H 0.039 0.961 4 C -0.603 4.603 5 H 0.042 0.958 6 C -0.002 4.002 7 N -0.926 5.926 8 Si 1.050 2.950 9 H -0.285 1.285 10 H -0.273 1.273 11 H -0.244 1.244 12 N -0.993 5.993 13 C 0.100 3.900 14 S 2.799 3.201 15 O -0.996 6.996 16 O -1.011 7.011 17 N -1.117 6.117 18 C 0.158 3.842 19 C -0.111 4.111 20 C -0.072 4.072 21 C -0.119 4.119 22 C -0.066 4.066 23 C -0.158 4.158 24 C 0.555 3.445 25 N -0.825 5.825 26 O -0.596 6.596 27 C -0.065 4.065 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.258 0.742 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.419 0.581 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.151 0.849 39 H 0.172 0.828 40 H 0.169 0.831 41 H 0.419 0.581 42 H 0.412 0.588 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.224 -1.594 -15.797 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.141 3.859 3 H 0.056 0.944 4 C -0.642 4.642 5 H 0.060 0.940 6 C -0.203 4.203 7 N -0.561 5.561 8 Si 0.873 3.127 9 H -0.211 1.211 10 H -0.198 1.198 11 H -0.168 1.168 12 N -0.834 5.834 13 C -0.046 4.046 14 S 2.808 3.192 15 O -0.980 6.980 16 O -0.995 6.995 17 N -0.878 5.878 18 C 0.033 3.967 19 C -0.112 4.112 20 C -0.091 4.091 21 C -0.136 4.136 22 C -0.084 4.084 23 C -0.162 4.162 24 C 0.341 3.659 25 N -0.390 5.390 26 O -0.478 6.478 27 C -0.086 4.086 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.253 0.747 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.169 0.831 39 H 0.190 0.810 40 H 0.187 0.813 41 H 0.252 0.748 42 H 0.244 0.756 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 16.975 -0.174 -15.002 22.655 hybrid contribution 0.777 -1.417 0.288 1.641 sum 17.752 -1.590 -14.714 23.112 Atomic orbital electron populations 1.22321 0.96995 1.01421 1.00438 1.18747 0.92409 0.92115 0.82646 0.94378 1.22237 1.39722 1.10195 0.92035 0.94004 1.26640 0.93237 1.08257 0.92196 1.70954 1.46391 1.05849 1.32907 0.84001 0.79211 0.72769 0.76751 1.21127 1.19815 1.16804 1.57474 1.65392 1.22456 1.38077 1.21395 1.00953 0.80435 1.01783 1.01215 0.72790 0.72139 0.73064 1.93539 1.86341 1.76196 1.41896 1.93541 1.84441 1.34266 1.87262 1.55840 1.31009 1.15811 1.85139 1.20251 0.90317 0.82989 1.03186 1.19705 0.94593 1.03551 0.93387 1.21680 0.94798 0.94452 0.98183 1.21560 0.94121 0.99168 0.98798 1.21723 1.01205 0.94876 0.90611 1.19901 0.93973 1.08711 0.93572 1.18636 0.83526 0.74984 0.88715 1.43504 1.05788 1.75566 1.14125 1.90866 1.65469 1.52016 1.39432 1.21174 0.94377 0.95465 0.97537 0.92403 0.92922 0.93370 0.93324 0.92014 0.90549 0.91685 0.74677 0.91947 0.87834 0.83134 0.81026 0.81323 0.74752 0.75561 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.48 9.01 71.98 0.65 -5.83 16 2 C 0.25 11.44 2.22 44.24 0.10 11.54 16 3 H 0.04 1.86 5.49 -2.39 -0.01 1.84 16 4 C -0.60 -32.42 8.30 25.60 0.21 -32.21 16 5 H 0.04 2.41 7.38 -2.91 -0.02 2.39 16 6 C 0.00 -0.10 5.20 84.66 0.44 0.34 16 7 N -0.93 -56.85 13.70 21.45 0.29 -56.56 16 8 Si 1.05 50.32 26.44 68.60 1.81 52.13 16 9 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 10 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.24 -10.47 6.12 99.48 0.61 -9.86 16 12 N -0.99 -39.23 3.12 -520.45 -1.62 -40.85 16 13 C 0.10 3.38 9.15 127.77 1.17 4.55 16 14 S 2.80 102.19 6.09 -56.49 -0.34 101.85 16 15 O -1.00 -36.42 16.68 -128.00 -2.14 -38.55 16 16 O -1.01 -42.96 16.70 -128.00 -2.14 -45.10 16 17 N -1.12 -34.28 6.05 -190.78 -1.15 -35.44 16 18 C 0.16 4.22 6.37 85.63 0.55 4.76 16 19 C -0.11 -2.61 5.27 -19.90 -0.10 -2.71 16 20 C -0.07 -1.17 9.69 22.33 0.22 -0.96 16 21 C -0.12 -1.31 10.03 22.23 0.22 -1.08 16 22 C -0.07 -0.80 9.54 22.53 0.21 -0.58 16 23 C -0.16 -3.53 5.87 -20.09 -0.12 -3.65 16 24 C 0.55 13.96 8.05 86.79 0.70 14.66 16 25 N -0.82 -10.64 8.82 -175.60 -1.55 -12.19 16 26 O -0.60 -22.54 17.18 -3.88 -0.07 -22.60 16 27 C -0.07 -1.84 9.24 22.52 0.21 -1.63 16 28 H 0.06 2.32 7.45 -2.39 -0.02 2.31 16 29 H 0.05 2.31 5.44 -2.39 -0.01 2.29 16 30 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.26 15.92 8.73 -92.70 -0.81 15.11 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.08 2.16 7.79 -2.39 -0.02 2.14 16 34 H 0.06 2.41 6.92 -2.39 -0.02 2.40 16 35 H 0.42 12.15 8.64 -96.75 -0.84 11.31 16 36 H 0.06 1.86 8.08 -2.39 -0.02 1.84 16 37 H 0.10 2.34 7.69 -2.39 -0.02 2.32 16 38 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 39 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16 40 H 0.17 0.50 6.41 -2.91 -0.02 0.48 16 41 H 0.42 1.78 6.86 -92.71 -0.64 1.14 16 42 H 0.41 4.60 8.93 -92.71 -0.83 3.77 16 43 H 0.10 3.65 7.65 -2.91 -0.02 3.63 16 Total: -1.00 -82.14 368.93 -3.80 -85.94 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: -1.35 Total: 24.17 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 4.45 Total: -12.80 kcal Atomic # 7 Polarization: -141.00 SS G_CDS: -4.03 Total: -145.04 kcal Atomic # 8 Polarization: -101.92 SS G_CDS: -4.34 Total: -106.26 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 1.81 Total: 52.13 kcal Atomic # 16 Polarization: 102.19 SS G_CDS: -0.34 Total: 101.85 kcal Total: -82.14 -3.80 -85.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282938047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.438 kcal (2) G-P(sol) polarization free energy of solvation -82.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds