Wall clock time and date at job start Tue Mar 31 2020 23:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47041 * 2 1 4 4 C 1.50700 * 109.46723 * 239.99966 * 2 1 3 5 5 H 1.08009 * 119.99716 * 239.99849 * 4 2 1 6 6 C 1.37873 * 120.00173 * 60.00340 * 4 2 1 7 7 N 1.31518 * 120.00173 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00056 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47186 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47301 * 119.99591 * 8 6 4 11 11 H 1.48503 * 109.46632 * 239.99823 * 8 6 4 12 12 N 1.46498 * 109.46911 * 120.00055 * 2 1 3 13 13 C 1.46506 * 120.00239 * 60.00146 * 12 2 1 14 14 S 1.65597 * 119.99910 * 239.71921 * 12 2 1 15 15 O 1.42101 * 106.40154 * 23.82013 * 14 12 2 16 16 O 1.42106 * 106.40098 * 156.73670 * 14 12 2 17 17 N 1.65596 * 107.22389 * 270.27980 * 14 12 2 18 18 C 1.46498 * 119.99862 * 64.99463 * 17 14 12 19 19 C 1.50705 * 109.47089 * 165.00621 * 18 17 14 20 20 C 1.38378 * 119.92405 * 269.72910 * 19 18 17 21 21 C 1.38345 * 120.29116 * 179.72240 * 20 19 18 22 22 C 1.37973 * 120.14147 * 0.55129 * 21 20 19 23 23 C 1.39557 * 119.85529 * 359.72242 * 22 21 20 24 24 C 1.47847 * 120.14389 * 180.02562 * 23 22 21 25 25 N 1.34768 * 120.00210 * 359.97438 * 24 23 22 26 26 O 1.21554 * 119.99710 * 179.97438 * 24 23 22 27 27 C 1.37931 * 119.92608 * 90.00020 * 19 18 17 28 28 H 1.09006 * 109.47456 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47067 * 299.99809 * 1 2 3 30 30 H 1.09003 * 109.47209 * 60.00113 * 1 2 3 31 31 H 0.96991 * 120.00285 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.46892 * 269.72399 * 13 12 2 33 33 H 1.09000 * 109.46803 * 29.71572 * 13 12 2 34 34 H 1.09000 * 109.47214 * 149.72366 * 13 12 2 35 35 H 0.97000 * 119.99918 * 245.00321 * 17 14 12 36 36 H 1.09005 * 109.47365 * 285.00417 * 18 17 14 37 37 H 1.09000 * 109.47259 * 45.00301 * 18 17 14 38 38 H 1.08005 * 119.85508 * 359.97438 * 20 19 18 39 39 H 1.08004 * 119.92509 * 180.25360 * 21 20 19 40 40 H 1.08003 * 120.07297 * 179.74321 * 22 21 20 41 41 H 0.97000 * 120.00244 * 0.02562 * 25 24 23 42 42 H 0.96996 * 120.00243 * 179.97438 * 25 24 23 43 43 H 1.07998 * 120.08015 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.1482 -2.2857 -3.6039 10 1 1.1677 -1.5867 -4.8165 11 1 3.1471 -0.1858 -4.8161 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0933 1.4280 14 16 2.9760 0.1121 2.2827 15 8 2.6963 1.4956 2.1187 16 8 2.8335 -0.5680 3.5223 17 7 4.5470 -0.1069 1.8070 18 6 5.0117 0.4514 0.5348 19 6 6.5184 0.4423 0.5027 20 6 7.2254 1.5362 0.9699 21 6 8.6087 1.5337 0.9493 22 6 9.2922 0.4433 0.4516 23 6 8.5851 -0.6608 -0.0263 24 6 9.3110 -1.8328 -0.5606 25 7 10.6584 -1.8362 -0.5872 26 8 8.6925 -2.7933 -0.9757 27 6 7.1894 -0.6541 0.0026 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 0.7081 1.1609 -3.4843 32 1 0.7401 -2.1444 2.0035 33 1 1.5246 -2.5956 0.4708 34 1 2.4650 -2.5832 1.9821 35 1 5.1595 -0.6049 2.3707 36 1 4.6272 -0.1508 -0.2884 37 1 4.6523 1.4755 0.4345 38 1 6.6951 2.3942 1.3561 39 1 9.1547 2.3890 1.3192 40 1 10.3720 0.4442 0.4322 41 1 11.1521 -1.0699 -0.2556 42 1 11.1347 -2.6053 -0.9373 43 1 6.6364 -1.5057 -0.3654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282938048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:27 Heat of formation + Delta-G solvation = -117.084809 kcal Electronic energy + Delta-G solvation = -28193.021236 eV Core-core repulsion = 24170.642570 eV Total energy + Delta-G solvation = -4022.378666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.18450 -39.49696 -38.34850 -37.87192 -36.90738 -36.34822 -34.81205 -34.49820 -32.02608 -31.90301 -30.90622 -27.26524 -27.00583 -26.70097 -25.17485 -22.80948 -22.57947 -21.36608 -20.40408 -19.20247 -18.71264 -18.37665 -18.33167 -17.79191 -17.27620 -16.98974 -16.69315 -16.03641 -16.01462 -15.86328 -15.48365 -15.17831 -14.92100 -14.73287 -14.50042 -14.23219 -13.95837 -13.73535 -13.46704 -13.40989 -13.24002 -13.16295 -13.07624 -12.99008 -12.74385 -12.68494 -12.60578 -12.19015 -12.13048 -12.03130 -11.88219 -11.22857 -11.17102 -10.76700 -10.50421 -10.48845 -9.96316 -9.93635 -9.64854 -8.08639 -6.22003 -0.37294 -0.15348 0.33644 1.42031 1.47313 1.55959 1.77970 2.05593 2.45126 2.49419 2.60986 2.87523 3.20183 3.40130 3.64742 3.82583 3.90437 4.09250 4.12622 4.28740 4.31855 4.46923 4.63769 4.71808 4.80011 4.85124 4.92048 4.99453 5.00524 5.04591 5.18008 5.25240 5.27108 5.37616 5.55865 5.62528 5.70292 5.82032 5.85052 5.90111 6.06371 6.17190 6.31014 6.40463 6.87532 7.27263 7.47624 8.95931 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009651 B = 0.004352 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.476339 B = 6431.689474 C = 8057.852957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.273 3.727 3 H 0.031 0.969 4 C -0.525 4.525 5 H 0.066 0.934 6 C 0.026 3.974 7 N -0.913 5.913 8 Si 0.946 3.054 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.284 1.284 12 N -0.997 5.997 13 C 0.101 3.899 14 S 2.799 3.201 15 O -1.012 7.012 16 O -1.007 7.007 17 N -1.111 6.111 18 C 0.160 3.840 19 C -0.108 4.108 20 C -0.079 4.079 21 C -0.119 4.119 22 C -0.066 4.066 23 C -0.158 4.158 24 C 0.559 3.441 25 N -0.826 5.826 26 O -0.593 6.593 27 C -0.061 4.061 28 H 0.041 0.959 29 H 0.019 0.981 30 H 0.071 0.929 31 H 0.263 0.737 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.421 0.579 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.140 0.860 39 H 0.169 0.831 40 H 0.170 0.830 41 H 0.419 0.581 42 H 0.413 0.587 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.416 -0.015 6.570 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.168 3.832 3 H 0.049 0.951 4 C -0.564 4.564 5 H 0.084 0.916 6 C -0.174 4.174 7 N -0.552 5.552 8 Si 0.772 3.228 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.210 1.210 12 N -0.839 5.839 13 C -0.045 4.045 14 S 2.808 3.192 15 O -0.995 6.995 16 O -0.992 6.992 17 N -0.873 5.873 18 C 0.034 3.966 19 C -0.110 4.110 20 C -0.098 4.098 21 C -0.137 4.137 22 C -0.085 4.085 23 C -0.161 4.161 24 C 0.346 3.654 25 N -0.391 5.391 26 O -0.474 6.474 27 C -0.081 4.081 28 H 0.060 0.940 29 H 0.038 0.962 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.256 0.744 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.158 0.842 39 H 0.186 0.814 40 H 0.188 0.812 41 H 0.252 0.748 42 H 0.245 0.755 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 19.373 0.189 6.871 20.556 hybrid contribution 0.403 -0.848 -1.212 1.533 sum 19.776 -0.658 5.659 20.580 Atomic orbital electron populations 1.21948 0.97982 0.99990 0.99993 1.18433 0.91971 0.91551 0.81210 0.95086 1.21598 1.31372 1.12915 0.90556 0.91581 1.25513 0.95176 0.95475 1.01265 1.69996 1.37247 1.23780 1.24169 0.85696 0.78073 0.78792 0.80193 1.19453 1.20848 1.20997 1.57622 1.64946 1.22484 1.38877 1.21357 1.00388 0.80548 1.02161 1.01158 0.72974 0.72839 0.72211 1.93534 1.84661 1.34394 1.86936 1.93531 1.86436 1.76086 1.43117 1.55723 1.29544 1.70721 1.31295 1.20141 0.91481 0.99614 0.85329 1.19730 0.94246 0.95399 1.01643 1.21660 0.95577 0.97208 0.95359 1.21513 0.93256 0.99568 0.99367 1.21710 1.01513 0.91039 0.94233 1.19911 0.93683 0.96296 1.06182 1.18503 0.83586 0.86208 0.77114 1.43512 1.05390 1.24320 1.65836 1.90827 1.68977 1.37796 1.49823 1.21171 0.93894 0.97450 0.95551 0.93951 0.96204 0.91070 0.92721 0.92866 0.90608 0.90972 0.74428 0.90933 0.90357 0.84185 0.81354 0.81221 0.74834 0.75494 0.86788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.66 8.97 71.98 0.65 -6.01 16 2 C 0.27 13.16 2.62 44.25 0.12 13.28 16 3 H 0.03 1.68 6.91 -2.39 -0.02 1.66 16 4 C -0.53 -26.36 7.62 25.60 0.20 -26.17 16 5 H 0.07 3.25 7.34 -2.91 -0.02 3.23 16 6 C 0.03 1.35 5.30 84.65 0.45 1.80 16 7 N -0.91 -49.92 11.32 21.45 0.24 -49.68 16 8 Si 0.95 42.08 29.54 68.60 2.03 44.11 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 12 N -1.00 -40.89 3.12 -520.44 -1.62 -42.51 16 13 C 0.10 3.55 9.28 127.77 1.19 4.74 16 14 S 2.80 108.07 6.09 -56.49 -0.34 107.73 16 15 O -1.01 -45.60 16.18 -128.00 -2.07 -47.67 16 16 O -1.01 -40.31 17.21 -128.00 -2.20 -42.51 16 17 N -1.11 -34.87 6.05 -190.78 -1.15 -36.02 16 18 C 0.16 5.17 6.37 85.64 0.55 5.72 16 19 C -0.11 -2.85 5.27 -19.90 -0.10 -2.96 16 20 C -0.08 -1.59 9.69 22.33 0.22 -1.37 16 21 C -0.12 -1.59 10.03 22.23 0.22 -1.36 16 22 C -0.07 -0.85 9.54 22.53 0.21 -0.63 16 23 C -0.16 -3.38 5.87 -20.09 -0.12 -3.50 16 24 C 0.56 12.77 8.05 86.79 0.70 13.47 16 25 N -0.83 -9.19 8.82 -175.61 -1.55 -10.74 16 26 O -0.59 -20.00 17.18 -3.88 -0.07 -20.06 16 27 C -0.06 -1.67 9.24 22.53 0.21 -1.46 16 28 H 0.04 1.88 7.67 -2.38 -0.02 1.86 16 29 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 31 H 0.26 13.77 8.31 -92.72 -0.77 13.00 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 2.72 7.02 -2.39 -0.02 2.71 16 34 H 0.07 2.19 7.79 -2.39 -0.02 2.17 16 35 H 0.42 11.06 8.64 -96.75 -0.84 10.22 16 36 H 0.07 2.67 7.71 -2.38 -0.02 2.65 16 37 H 0.08 2.66 7.69 -2.39 -0.02 2.65 16 38 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 39 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 40 H 0.17 0.54 6.41 -2.91 -0.02 0.52 16 41 H 0.42 1.34 6.86 -92.71 -0.64 0.70 16 42 H 0.41 3.72 8.93 -92.71 -0.83 2.89 16 43 H 0.11 3.67 7.65 -2.91 -0.02 3.65 16 Total: -1.00 -75.42 372.11 -3.49 -78.90 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -1.22 Total: 22.93 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 4.48 Total: -4.47 kcal Atomic # 7 Polarization: -134.87 SS G_CDS: -4.08 Total: -138.96 kcal Atomic # 8 Polarization: -105.90 SS G_CDS: -4.34 Total: -110.24 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 108.07 SS G_CDS: -0.34 Total: 107.73 kcal Total: -75.42 -3.49 -78.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282938048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.182 kcal (2) G-P(sol) polarization free energy of solvation -75.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds