Wall clock time and date at job start Tue Mar 31 2020 23:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46987 * 2 1 4 4 C 1.50692 * 109.47267 * 120.00602 * 2 1 3 5 5 H 1.08003 * 120.00316 * 114.36808 * 4 2 1 6 6 C 1.37886 * 119.99877 * 294.36601 * 4 2 1 7 7 N 1.31510 * 119.99961 * 156.89610 * 6 4 2 8 8 Si 1.86796 * 119.99750 * 337.17309 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.72455 * 8 6 4 10 10 H 1.48502 * 109.47231 * 299.72156 * 8 6 4 11 11 H 1.48498 * 109.47554 * 59.72235 * 8 6 4 12 12 N 1.46509 * 109.47062 * 240.00243 * 2 1 3 13 13 C 1.46502 * 119.99604 * 300.00516 * 12 2 1 14 14 S 1.65598 * 119.99835 * 119.99654 * 12 2 1 15 15 O 1.42102 * 106.40027 * 203.53979 * 14 12 2 16 16 O 1.42091 * 106.40355 * 336.46171 * 14 12 2 17 17 N 1.65598 * 107.21635 * 90.00560 * 14 12 2 18 18 C 1.46506 * 120.00181 * 64.99320 * 17 14 12 19 19 C 1.50702 * 109.46805 * 165.00281 * 18 17 14 20 20 C 1.38365 * 119.85342 * 269.72764 * 19 18 17 21 21 C 1.37957 * 120.14344 * 179.72553 * 20 19 18 22 22 C 1.39572 * 119.85206 * 0.54752 * 21 20 19 23 23 C 1.47842 * 120.14307 * 179.69891 * 22 21 20 24 24 N 1.34776 * 120.00191 * 0.03115 * 23 22 21 25 25 O 1.21555 * 120.00044 * 180.02562 * 23 22 21 26 26 C 1.39581 * 119.71543 * 359.72973 * 22 21 20 27 27 C 1.37960 * 119.84681 * 359.97438 * 26 22 21 28 28 H 1.09002 * 109.47176 * 293.29860 * 1 2 3 29 29 H 1.09005 * 109.47375 * 53.29697 * 1 2 3 30 30 H 1.09000 * 109.47483 * 173.29600 * 1 2 3 31 31 H 0.97006 * 120.00339 * 355.20022 * 7 6 4 32 32 H 1.08992 * 109.47772 * 90.00121 * 13 12 2 33 33 H 1.09003 * 109.46297 * 209.99546 * 13 12 2 34 34 H 1.08994 * 109.47613 * 329.99192 * 13 12 2 35 35 H 0.96998 * 120.00072 * 245.00203 * 17 14 12 36 36 H 1.08997 * 109.47104 * 285.00272 * 18 17 14 37 37 H 1.09000 * 109.46515 * 45.00774 * 18 17 14 38 38 H 1.07997 * 119.92456 * 0.02562 * 20 19 18 39 39 H 1.08006 * 120.07102 * 180.25031 * 21 20 19 40 40 H 0.97003 * 119.99870 * 359.97438 * 24 23 22 41 41 H 0.97002 * 120.00122 * 179.97438 * 24 23 22 42 42 H 1.07994 * 120.07341 * 179.97438 * 26 22 21 43 43 H 1.08002 * 119.92346 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5762 -1.6386 1.1338 6 6 1.7977 -0.1757 2.4794 7 7 1.8081 -0.9531 3.5401 8 14 1.4573 1.6517 2.6639 9 1 1.2326 1.9711 4.0966 10 1 2.6208 2.4253 2.1609 11 1 0.2479 2.0116 1.8810 12 7 2.0183 -0.6906 -1.1963 13 6 1.6642 -2.0932 -1.4281 14 16 2.9703 0.1143 -2.2863 15 8 2.8226 -0.5645 -3.5260 16 8 2.6902 1.4973 -2.1193 17 7 4.5436 -0.1042 -1.8182 18 6 5.1356 -1.4441 -1.8417 19 6 6.6347 -1.3328 -1.7354 20 6 7.4010 -1.2310 -2.8830 21 6 8.7733 -1.1232 -2.7923 22 6 9.3895 -1.1284 -1.5400 23 6 10.8602 -1.0199 -1.4357 24 7 11.6090 -0.9149 -2.5514 25 8 11.3941 -1.0252 -0.3437 26 6 8.6111 -1.2372 -0.3864 27 6 7.2392 -1.3382 -0.4908 28 1 -0.3634 0.4065 0.9439 29 1 -0.3634 0.6142 -0.8239 30 1 -0.3634 -1.0206 -0.1200 31 1 1.9114 -1.9121 3.4376 32 1 0.7375 -2.1443 -1.9995 33 1 2.4627 -2.5818 -1.9866 34 1 1.5294 -2.5969 -0.4711 35 1 5.0733 0.6550 -1.5283 36 1 4.7539 -2.0248 -1.0020 37 1 4.8735 -1.9407 -2.7760 38 1 6.9233 -1.2311 -3.8515 39 1 9.3700 -1.0397 -3.6888 40 1 11.1830 -0.9110 -3.4228 41 1 12.5740 -0.8434 -2.4829 42 1 9.0818 -1.2423 0.5855 43 1 6.6358 -1.4229 0.4009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282963789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:31 Heat of formation + Delta-G solvation = -89.404964 kcal Electronic energy + Delta-G solvation = -27765.537145 eV Core-core repulsion = 23744.358768 eV Total energy + Delta-G solvation = -4021.178378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.39361 -38.71683 -36.88062 -36.39776 -35.44147 -35.26257 -34.11735 -32.65491 -31.21102 -31.07944 -29.84405 -26.39266 -25.73703 -24.71438 -22.93275 -22.91293 -20.77472 -20.61350 -18.97545 -18.53553 -17.63367 -17.38681 -17.13972 -17.02637 -16.26137 -15.52717 -15.32769 -15.06293 -15.03284 -14.69848 -14.04598 -13.87979 -13.78242 -13.48994 -13.38603 -13.19299 -12.92256 -12.77212 -12.21088 -12.10324 -12.03374 -11.82241 -11.71484 -11.57293 -11.41643 -11.35301 -11.27951 -10.80740 -10.49929 -10.37603 -10.09049 -10.08191 -9.84019 -9.43456 -9.27250 -9.23209 -9.12844 -8.46935 -8.10920 -6.56611 -4.19568 0.46775 1.10023 1.14010 2.55842 3.15212 3.31226 3.36481 3.43314 3.57079 3.65039 3.98181 4.34848 4.41788 4.47609 4.59215 4.70686 4.85217 5.05849 5.09090 5.12509 5.29012 5.40604 5.54061 5.59428 5.79458 5.85487 5.98253 6.00251 6.09221 6.11834 6.34087 6.35801 6.40498 6.45197 6.53606 6.62106 6.64143 6.93453 6.95390 7.11307 7.27539 7.45607 7.90256 7.91970 8.26259 8.78715 9.45832 10.78612 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012903 B = 0.003329 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.496877 B = 8408.325161 C = 9709.101953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.247 3.753 3 H 0.047 0.953 4 C -0.617 4.617 5 H 0.066 0.934 6 C 0.044 3.956 7 N -0.892 5.892 8 Si 1.023 2.977 9 H -0.283 1.283 10 H -0.279 1.279 11 H -0.273 1.273 12 N -0.984 5.984 13 C 0.105 3.895 14 S 2.783 3.217 15 O -0.994 6.994 16 O -0.982 6.982 17 N -1.123 6.123 18 C 0.158 3.842 19 C -0.064 4.064 20 C -0.111 4.111 21 C -0.090 4.090 22 C -0.141 4.141 23 C 0.564 3.436 24 N -0.853 5.853 25 O -0.540 6.540 26 C -0.058 4.058 27 C -0.105 4.105 28 H 0.061 0.939 29 H 0.026 0.974 30 H 0.049 0.951 31 H 0.270 0.730 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.415 0.585 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.133 0.867 39 H 0.126 0.874 40 H 0.401 0.599 41 H 0.404 0.596 42 H 0.138 0.862 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.618 -2.458 -14.208 19.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.142 3.858 3 H 0.065 0.935 4 C -0.656 4.656 5 H 0.084 0.916 6 C -0.164 4.164 7 N -0.524 5.524 8 Si 0.850 3.150 9 H -0.208 1.208 10 H -0.205 1.205 11 H -0.199 1.199 12 N -0.826 5.826 13 C -0.041 4.041 14 S 2.792 3.208 15 O -0.978 6.978 16 O -0.966 6.966 17 N -0.882 5.882 18 C 0.032 3.968 19 C -0.066 4.066 20 C -0.130 4.130 21 C -0.109 4.109 22 C -0.145 4.145 23 C 0.351 3.649 24 N -0.417 5.417 25 O -0.417 6.417 26 C -0.077 4.077 27 C -0.124 4.124 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.248 0.752 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.231 0.769 41 H 0.235 0.765 42 H 0.156 0.844 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.094 -0.979 -13.132 17.880 hybrid contribution 0.874 -1.120 -1.055 1.769 sum 12.968 -2.098 -14.187 19.335 Atomic orbital electron populations 1.22393 0.98390 1.00462 1.00071 1.18959 0.91358 0.92788 0.82685 0.93544 1.22118 1.41406 1.11303 0.90734 0.91596 1.25587 0.93249 1.05528 0.92012 1.70865 1.43205 1.06415 1.31899 0.84339 0.77890 0.76254 0.76492 1.20811 1.20503 1.19926 1.57498 1.64537 1.21465 1.39128 1.21238 0.99126 0.81715 1.02036 1.01801 0.72578 0.73094 0.73363 1.93549 1.85956 1.76313 1.41968 1.93589 1.83610 1.32476 1.86897 1.56049 1.32095 1.14533 1.85488 1.20187 0.89133 0.84416 1.03105 1.20151 0.95371 0.97645 0.93406 1.21080 0.93279 0.99918 0.98705 1.21219 0.95029 0.98493 0.96126 1.19892 0.92612 1.07256 0.94711 1.18338 0.87212 0.75272 0.84094 1.43762 1.11179 1.77707 1.09028 1.90829 1.74003 1.49857 1.27024 1.21320 0.93260 0.94714 0.98410 1.21286 0.94440 0.98766 0.97912 0.92055 0.95452 0.93164 0.91981 0.93693 0.93042 0.90001 0.75183 0.90113 0.89689 0.84928 0.85611 0.76948 0.76481 0.84377 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.01 37.16 0.33 -2.92 16 2 C 0.25 5.52 2.22 -69.08 -0.15 5.37 16 3 H 0.05 1.10 5.49 -51.93 -0.29 0.81 16 4 C -0.62 -15.44 8.30 -34.44 -0.29 -15.73 16 5 H 0.07 1.72 7.38 -52.48 -0.39 1.33 16 6 C 0.04 1.17 5.20 -17.82 -0.09 1.08 16 7 N -0.89 -25.34 13.70 55.43 0.76 -24.58 16 8 Si 1.02 23.93 26.44 -169.99 -4.49 19.43 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 11 H -0.27 -6.00 6.12 56.52 0.35 -5.65 16 12 N -0.98 -18.80 3.12 -115.86 -0.36 -19.16 16 13 C 0.11 1.73 9.15 59.85 0.55 2.28 16 14 S 2.78 49.89 6.09 -107.50 -0.66 49.23 16 15 O -0.99 -18.51 16.68 -57.17 -0.95 -19.47 16 16 O -0.98 -20.57 16.70 -57.17 -0.95 -21.53 16 17 N -1.12 -16.25 6.05 -11.65 -0.07 -16.32 16 18 C 0.16 1.94 6.37 -5.19 -0.03 1.91 16 19 C -0.06 -0.71 5.28 -104.53 -0.55 -1.26 16 20 C -0.11 -1.04 9.68 -39.64 -0.38 -1.42 16 21 C -0.09 -0.74 9.54 -39.19 -0.37 -1.12 16 22 C -0.14 -1.47 5.87 -104.97 -0.62 -2.09 16 23 C 0.56 6.07 8.05 -12.33 -0.10 5.97 16 24 N -0.85 -5.25 8.82 30.53 0.27 -4.98 16 25 O -0.54 -8.01 17.18 5.32 0.09 -7.92 16 26 C -0.06 -0.67 9.60 -39.18 -0.38 -1.05 16 27 C -0.11 -1.22 9.68 -39.64 -0.38 -1.60 16 28 H 0.06 1.34 5.44 -51.93 -0.28 1.06 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.00 7.45 -51.93 -0.39 0.61 16 31 H 0.27 7.60 8.73 -40.82 -0.36 7.24 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 34 H 0.08 1.42 6.92 -51.93 -0.36 1.06 16 35 H 0.41 5.57 8.64 -34.47 -0.30 5.27 16 36 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 37 H 0.08 0.96 7.69 -51.93 -0.40 0.56 16 38 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.13 0.59 6.41 -52.48 -0.34 0.25 16 40 H 0.40 1.32 6.86 -40.82 -0.28 1.04 16 41 H 0.40 1.97 8.93 -40.82 -0.36 1.60 16 42 H 0.14 1.62 7.65 -52.49 -0.40 1.22 16 43 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -34.22 368.92 -8.78 -43.00 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.50 Total: 7.32 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -2.47 Total: -10.58 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: 0.60 Total: -65.04 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -1.82 Total: -48.92 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -4.49 Total: 19.43 kcal Atomic # 16 Polarization: 49.89 SS G_CDS: -0.66 Total: 49.23 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.22 -8.78 -43.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282963789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.409 kcal (2) G-P(sol) polarization free energy of solvation -34.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds