Wall clock time and date at job start Tue Mar 31 2020 23:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47392 * 2 1 4 4 C 1.50707 * 109.46885 * 240.00115 * 2 1 3 5 5 H 1.08006 * 119.99771 * 239.99988 * 4 2 1 6 6 C 1.37872 * 120.00156 * 60.00240 * 4 2 1 7 7 N 1.31510 * 119.99907 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99930 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47020 * 89.99805 * 8 6 4 10 10 H 1.48498 * 109.46979 * 209.99765 * 8 6 4 11 11 H 1.48501 * 109.47023 * 329.99888 * 8 6 4 12 12 N 1.46504 * 109.47257 * 120.00098 * 2 1 3 13 13 C 1.46496 * 119.99635 * 59.99793 * 12 2 1 14 14 S 1.65600 * 119.99928 * 239.99833 * 12 2 1 15 15 O 1.42097 * 106.39860 * 156.45461 * 14 12 2 16 16 O 1.42102 * 106.40043 * 23.54283 * 14 12 2 17 17 N 1.65599 * 107.21735 * 269.99996 * 14 12 2 18 18 C 1.46499 * 120.00012 * 65.00259 * 17 14 12 19 19 C 1.50701 * 109.46992 * 164.99696 * 18 17 14 20 20 C 1.38352 * 119.85535 * 269.72790 * 19 18 17 21 21 C 1.37957 * 120.14512 * 179.72611 * 20 19 18 22 22 C 1.39580 * 119.85343 * 0.54518 * 21 20 19 23 23 C 1.47843 * 120.14353 * 179.70877 * 22 21 20 24 24 N 1.34767 * 120.00348 * 0.02562 * 23 22 21 25 25 O 1.21553 * 119.99762 * 180.02562 * 23 22 21 26 26 C 1.39577 * 119.70869 * 359.72546 * 22 21 20 27 27 C 1.37959 * 119.85188 * 359.97438 * 26 22 21 28 28 H 1.09002 * 109.46708 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46797 * 300.00006 * 1 2 3 30 30 H 1.09002 * 109.47142 * 60.00114 * 1 2 3 31 31 H 0.97002 * 120.00089 * 180.02562 * 7 6 4 32 32 H 1.09006 * 109.47088 * 269.99703 * 13 12 2 33 33 H 1.08996 * 109.47486 * 30.00375 * 13 12 2 34 34 H 1.09003 * 109.46546 * 150.00318 * 13 12 2 35 35 H 0.97001 * 119.99797 * 244.99459 * 17 14 12 36 36 H 1.09002 * 109.47391 * 44.99686 * 18 17 14 37 37 H 1.09001 * 109.46813 * 284.99743 * 18 17 14 38 38 H 1.08006 * 119.92574 * 359.97438 * 20 19 18 39 39 H 1.08005 * 120.07473 * 180.25144 * 21 20 19 40 40 H 0.97005 * 120.00200 * 0.02562 * 24 23 22 41 41 H 0.96998 * 120.00711 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.07314 * 179.97438 * 26 22 21 43 43 H 1.08002 * 119.92451 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 1.3448 -2.1616 -4.4124 10 1 2.4873 -0.1402 -5.1120 11 1 3.6309 -1.7566 -3.7120 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4279 14 16 2.9705 0.1141 2.2862 15 8 2.8228 -0.5646 3.5258 16 8 2.6904 1.4973 2.1193 17 7 4.5438 -0.1043 1.8179 18 6 5.0140 0.4530 0.5472 19 6 6.5207 0.4451 0.5221 20 6 7.2231 1.5407 0.9916 21 6 8.6026 1.5376 0.9766 22 6 9.2896 0.4305 0.4759 23 6 10.7678 0.4229 0.4509 24 7 11.4550 1.4863 0.9127 25 8 11.3633 -0.5424 0.0138 26 6 8.5748 -0.6693 -0.0014 27 6 7.1955 -0.6558 0.0250 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.7082 1.1609 -3.4844 32 1 0.7376 -2.1443 1.9994 33 1 1.5295 -2.5968 0.4708 34 1 2.4629 -2.5818 1.9863 35 1 5.1541 -0.6011 2.3850 36 1 4.6542 1.4767 0.4441 37 1 4.6336 -0.1505 -0.2770 38 1 6.6903 2.3987 1.3743 39 1 9.1499 2.3918 1.3472 40 1 10.9798 2.2565 1.2618 41 1 12.4248 1.4815 0.8959 42 1 9.1003 -1.5288 -0.3905 43 1 6.6412 -1.5060 -0.3444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282963794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:35 Heat of formation + Delta-G solvation = -90.946488 kcal Electronic energy + Delta-G solvation = -27898.246937 eV Core-core repulsion = 23877.001714 eV Total energy + Delta-G solvation = -4021.245223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.32125 -38.62995 -36.74500 -36.18164 -35.29337 -35.11123 -34.06373 -32.65761 -31.11700 -30.98814 -29.12063 -26.22221 -25.54479 -25.23842 -22.82070 -22.79620 -20.80142 -20.57382 -18.94222 -18.47022 -17.30077 -17.08565 -16.94358 -16.52654 -16.03566 -15.35194 -15.18041 -15.07631 -14.98274 -14.72785 -14.27100 -13.78148 -13.53988 -13.44341 -13.27609 -12.94274 -12.73278 -12.63606 -12.07800 -11.99857 -11.80859 -11.54938 -11.43545 -11.29637 -11.24250 -11.17230 -11.00790 -10.89813 -10.47812 -10.32545 -10.26925 -10.11590 -10.04148 -9.43056 -9.17166 -9.11727 -9.02088 -8.54825 -8.01252 -6.15927 -4.25386 0.56439 1.21042 1.25194 2.62896 3.20333 3.20536 3.28943 3.29158 3.46877 3.74783 4.12152 4.29445 4.47135 4.57615 4.71788 4.80284 5.03157 5.14233 5.20808 5.25103 5.47971 5.58305 5.71141 5.79840 5.93447 6.06449 6.14970 6.15763 6.16005 6.33513 6.43992 6.50282 6.62775 6.71203 6.84007 6.84800 7.00179 7.07761 7.18287 7.47573 7.56592 7.72269 7.94559 7.99249 8.19667 8.78296 9.41809 10.88706 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.003641 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.913073 B = 7688.115892 C = 9310.622319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.266 3.734 3 H 0.059 0.941 4 C -0.529 4.529 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.990 5.990 13 C 0.108 3.892 14 S 2.783 3.217 15 O -0.998 6.998 16 O -0.981 6.981 17 N -1.127 6.127 18 C 0.152 3.848 19 C -0.057 4.057 20 C -0.111 4.111 21 C -0.089 4.089 22 C -0.145 4.145 23 C 0.565 3.435 24 N -0.853 5.853 25 O -0.543 6.543 26 C -0.060 4.060 27 C -0.109 4.109 28 H 0.032 0.968 29 H 0.012 0.988 30 H 0.092 0.908 31 H 0.264 0.736 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.409 0.591 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.134 0.866 39 H 0.125 0.875 40 H 0.401 0.599 41 H 0.404 0.596 42 H 0.136 0.864 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.654 1.151 6.565 15.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.077 0.923 4 C -0.569 4.569 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.833 5.833 13 C -0.039 4.039 14 S 2.792 3.208 15 O -0.983 6.983 16 O -0.964 6.964 17 N -0.885 5.885 18 C 0.027 3.973 19 C -0.059 4.059 20 C -0.130 4.130 21 C -0.108 4.108 22 C -0.148 4.148 23 C 0.352 3.648 24 N -0.417 5.417 25 O -0.420 6.420 26 C -0.079 4.079 27 C -0.128 4.128 28 H 0.051 0.949 29 H 0.031 0.969 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.241 0.759 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.152 0.848 39 H 0.143 0.857 40 H 0.231 0.769 41 H 0.235 0.765 42 H 0.154 0.846 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.338 1.202 6.744 14.994 hybrid contribution 0.851 -0.463 -0.875 1.306 sum 14.189 0.740 5.868 15.372 Atomic orbital electron populations 1.22054 0.97998 0.99687 1.00748 1.18756 0.91997 0.92696 0.80210 0.92320 1.21368 1.32224 1.13195 0.90089 0.91808 1.24909 0.94878 0.94873 0.98936 1.69876 1.35933 1.22469 1.23897 0.86581 0.79254 0.79411 0.82636 1.20674 1.21178 1.19824 1.57704 1.64317 1.21469 1.39829 1.21171 0.98974 0.81888 1.01828 1.01805 0.72596 0.73725 0.72715 1.93552 1.85866 1.76163 1.42670 1.93578 1.83814 1.32491 1.86553 1.56096 1.30614 1.70873 1.30958 1.20331 0.89343 1.01111 0.86548 1.20273 0.95926 0.93773 0.95939 1.21138 0.93603 0.98765 0.99470 1.21231 0.94609 0.96860 0.98064 1.19856 0.92340 0.96953 1.05680 1.18345 0.87638 0.82280 0.76525 1.43763 1.11048 1.20087 1.66772 1.90814 1.70858 1.34049 1.46326 1.21275 0.93769 0.97292 0.95552 1.21226 0.93776 0.98574 0.99186 0.94875 0.96899 0.88929 0.92568 0.93929 0.90193 0.93171 0.75909 0.89258 0.88482 0.84818 0.85674 0.76899 0.76543 0.84600 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.97 37.16 0.33 -2.99 16 2 C 0.27 6.08 2.62 -69.07 -0.18 5.90 16 3 H 0.06 1.48 6.91 -51.93 -0.36 1.12 16 4 C -0.53 -12.55 7.66 -34.44 -0.26 -12.82 16 5 H 0.06 1.46 7.33 -52.48 -0.38 1.08 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.88 -23.10 11.32 55.43 0.63 -22.47 16 8 Si 0.89 19.40 29.54 -169.99 -5.02 14.38 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 12 N -0.99 -19.28 3.12 -115.85 -0.36 -19.64 16 13 C 0.11 1.83 9.28 59.84 0.56 2.39 16 14 S 2.78 51.20 6.09 -107.50 -0.66 50.55 16 15 O -1.00 -19.63 17.21 -57.17 -0.98 -20.61 16 16 O -0.98 -21.06 16.17 -57.17 -0.92 -21.98 16 17 N -1.13 -16.39 6.05 -11.65 -0.07 -16.46 16 18 C 0.15 2.21 6.36 -5.19 -0.03 2.18 16 19 C -0.06 -0.70 5.28 -104.53 -0.55 -1.26 16 20 C -0.11 -1.19 9.68 -39.64 -0.38 -1.57 16 21 C -0.09 -0.81 9.54 -39.18 -0.37 -1.19 16 22 C -0.14 -1.58 5.87 -104.97 -0.62 -2.19 16 23 C 0.57 6.26 8.05 -12.33 -0.10 6.16 16 24 N -0.85 -5.62 8.82 30.53 0.27 -5.35 16 25 O -0.54 -8.12 17.18 5.32 0.09 -8.02 16 26 C -0.06 -0.70 9.60 -39.18 -0.38 -1.08 16 27 C -0.11 -1.28 9.68 -39.64 -0.38 -1.67 16 28 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 31 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.37 7.02 -51.93 -0.36 1.01 16 34 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 35 H 0.41 5.00 8.64 -34.47 -0.30 4.71 16 36 H 0.09 1.38 7.69 -51.93 -0.40 0.98 16 37 H 0.10 1.54 7.76 -51.93 -0.40 1.14 16 38 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.13 0.70 6.41 -52.48 -0.34 0.36 16 40 H 0.40 1.55 6.86 -40.82 -0.28 1.27 16 41 H 0.40 2.11 8.93 -40.82 -0.36 1.74 16 42 H 0.14 1.56 7.65 -52.49 -0.40 1.16 16 43 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 372.18 15.07 5.61 5.61 Total: -1.00 -32.64 372.18 -9.42 -42.06 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -5.53 Total: 8.50 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -2.47 Total: -6.56 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: 0.46 Total: -63.92 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -1.82 Total: -50.62 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Atomic # 16 Polarization: 51.20 SS G_CDS: -0.66 Total: 50.55 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.64 -9.42 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282963794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.882 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds