Wall clock time and date at job start Tue Mar 31 2020 23:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47353 * 2 1 4 4 C 1.53001 * 109.47415 * 239.99596 * 2 1 3 5 5 C 1.47194 * 109.46870 * 175.00230 * 4 2 1 6 6 N 3.43546 * 154.82759 * 248.42868 * 2 1 3 7 7 N 1.46508 * 109.46879 * 119.99934 * 2 1 3 8 8 C 1.46493 * 120.00011 * 56.22618 * 7 2 1 9 9 S 1.65602 * 119.99704 * 236.22721 * 7 2 1 10 10 O 1.42097 * 106.40440 * 209.64094 * 9 7 2 11 11 O 1.42097 * 106.40277 * 342.56353 * 9 7 2 12 12 N 1.65600 * 107.21765 * 96.10094 * 9 7 2 13 13 C 1.46494 * 120.00479 * 264.31690 * 12 9 7 14 14 C 1.50700 * 109.47446 * 97.35798 * 13 12 9 15 15 H 1.08008 * 119.99583 * 4.11087 * 14 13 12 16 16 C 1.37874 * 120.00152 * 184.11545 * 14 13 12 17 17 N 1.31512 * 120.00262 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99924 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46955 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47331 * 119.99895 * 18 16 14 21 21 H 1.48506 * 109.46599 * 239.99796 * 18 16 14 22 22 C 1.46508 * 119.99808 * 84.31570 * 12 9 7 23 23 C 1.50701 * 109.46933 * 95.47779 * 22 12 9 24 24 C 1.34510 * 125.79100 * 95.12400 * 23 22 12 25 25 C 1.41389 * 106.84147 * 179.97438 * 24 23 22 26 26 C 1.34515 * 106.83822 * 0.02562 * 25 24 23 27 27 O 1.34300 * 108.42365 * 359.73419 * 26 25 24 28 28 H 1.08996 * 109.47261 * 182.94662 * 1 2 3 29 29 H 1.08997 * 109.47163 * 302.94873 * 1 2 3 30 30 H 1.08993 * 109.46896 * 62.94747 * 1 2 3 31 31 H 1.08995 * 109.46812 * 55.00278 * 4 2 1 32 32 H 1.08993 * 109.46803 * 295.00386 * 4 2 1 33 33 H 1.08995 * 109.46952 * 90.00363 * 8 7 2 34 34 H 1.09008 * 109.46854 * 209.99701 * 8 7 2 35 35 H 1.08997 * 109.47452 * 330.00298 * 8 7 2 36 36 H 1.09001 * 109.47460 * 217.35975 * 13 12 9 37 37 H 1.09002 * 109.47067 * 337.35697 * 13 12 9 38 38 H 0.97001 * 120.00087 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.47106 * 215.47592 * 22 12 9 40 40 H 1.08999 * 109.47145 * 335.47888 * 22 12 9 41 41 H 1.07998 * 126.58056 * 359.96321 * 24 23 22 42 42 H 1.08000 * 126.58061 * 179.97438 * 25 24 23 43 43 H 1.08000 * 125.78647 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5070 -0.6174 -1.3110 6 7 4.6392 -0.5372 -1.3589 7 7 2.0183 -0.6906 1.1963 8 6 1.5975 -2.0667 1.4706 9 16 3.0459 0.0844 2.2382 10 8 3.8548 -0.9239 2.8282 11 8 3.5804 1.1914 1.5254 12 7 2.1219 0.7162 3.4586 13 6 1.6779 2.1108 3.3945 14 6 0.2716 2.1661 2.8559 15 1 -0.2644 1.2511 2.6506 16 6 -0.3308 3.3845 2.6250 17 7 0.3216 4.4986 2.8753 18 14 -2.0744 3.4530 1.9579 19 1 -2.5842 2.0720 1.7627 20 1 -2.9456 4.1711 2.9225 21 1 -2.0790 4.1704 0.6576 22 6 1.7484 -0.1196 4.6025 23 6 2.7260 0.1029 5.7276 24 6 2.5638 0.9582 6.7531 25 6 3.7139 0.8441 7.5674 26 6 4.5104 -0.0736 6.9905 27 8 3.9045 -0.5232 5.8795 28 1 -0.3633 -1.0263 0.0528 29 1 -0.3633 0.5589 0.8623 30 1 -0.3633 0.4674 -0.9152 31 1 1.6055 -0.2618 -2.1369 32 1 1.7517 -1.7715 -1.2054 33 1 2.2985 -2.7604 1.0065 34 1 1.5806 -2.2336 2.5477 35 1 0.6003 -2.2301 1.0619 36 1 1.7016 2.5460 4.3936 37 1 2.3411 2.6734 2.7374 38 1 -0.1021 5.3559 2.7125 39 1 0.7451 0.1468 4.9349 40 1 1.7668 -1.1687 4.3073 41 1 1.7175 1.6075 6.9219 42 1 3.9149 1.3898 8.4775 43 1 5.4722 -0.3971 7.3604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283067869.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:50 Heat of formation + Delta-G solvation = -25.208048 kcal Electronic energy + Delta-G solvation = -29521.564718 eV Core-core repulsion = 25503.170127 eV Total energy + Delta-G solvation = -4018.394591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.13115 -37.97442 -36.72024 -35.99604 -35.78343 -35.22750 -32.79478 -32.48705 -31.70422 -30.03403 -28.04681 -27.21547 -26.33087 -24.99509 -22.53696 -21.33225 -21.10708 -20.20072 -18.58999 -17.75823 -17.54567 -17.00352 -16.86510 -16.34813 -15.96159 -15.47590 -15.04576 -14.61237 -14.46602 -14.25224 -13.86336 -13.66768 -13.43494 -13.11241 -12.92399 -12.59413 -12.46039 -12.41086 -12.28134 -12.24386 -12.19307 -11.95060 -11.66196 -11.55762 -11.51000 -11.41257 -11.25235 -11.19244 -11.02116 -10.73438 -10.64313 -10.57925 -10.13665 -9.86365 -9.53479 -8.91471 -8.56400 -8.29924 -8.11512 -6.17069 -4.24425 1.10813 2.10078 2.92306 2.95516 2.97393 3.18172 3.25630 3.28286 3.37276 3.43636 4.02481 4.16790 4.29119 4.81038 4.86703 5.00170 5.06424 5.16955 5.18385 5.20355 5.39311 5.39602 5.50782 5.52954 5.61174 5.67106 5.77656 5.83540 5.92728 6.02559 6.14206 6.19029 6.32851 6.41790 6.46527 6.61496 6.78185 6.86073 7.27148 7.35453 7.52821 7.56611 7.75005 7.79035 8.08123 8.80259 9.41299 10.91072 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008264 B = 0.006793 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3387.513105 B = 4120.953129 C = 6541.135648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.154 3.846 3 H 0.115 0.885 4 C -0.038 4.038 5 C 0.201 3.799 6 N -0.432 5.432 7 N -1.005 6.005 8 C 0.092 3.908 9 S 2.775 3.225 10 O -0.984 6.984 11 O -0.968 6.968 12 N -0.986 5.986 13 C 0.242 3.758 14 C -0.539 4.539 15 H 0.068 0.932 16 C 0.066 3.934 17 N -0.885 5.885 18 Si 0.889 3.111 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.282 1.282 22 C 0.213 3.787 23 C -0.025 4.025 24 C -0.196 4.196 25 C -0.219 4.219 26 C -0.051 4.051 27 O -0.163 6.163 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.055 0.945 38 H 0.264 0.736 39 H 0.116 0.884 40 H 0.079 0.921 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.574 -11.869 -0.264 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.046 3.954 3 H 0.133 0.867 4 C -0.079 4.079 5 C -0.117 4.117 6 N -0.109 5.109 7 N -0.844 5.844 8 C -0.053 4.053 9 S 2.785 3.215 10 O -0.968 6.968 11 O -0.952 6.952 12 N -0.826 5.826 13 C 0.121 3.879 14 C -0.579 4.579 15 H 0.086 0.914 16 C -0.137 4.137 17 N -0.523 5.523 18 Si 0.717 3.283 19 H -0.194 1.194 20 H -0.211 1.211 21 H -0.208 1.208 22 C 0.086 3.914 23 C -0.077 4.077 24 C -0.216 4.216 25 C -0.238 4.238 26 C -0.120 4.120 27 O -0.058 6.058 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.134 0.866 40 H 0.097 0.903 41 H 0.167 0.833 42 H 0.161 0.839 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 0.170 -11.699 -0.660 11.719 hybrid contribution -1.798 0.420 0.057 1.848 sum -1.628 -11.280 -0.603 11.413 Atomic orbital electron populations 1.22261 0.93098 1.02591 1.04628 1.20821 0.95774 0.97127 0.81689 0.86710 1.19840 0.82200 1.04544 1.01358 1.29185 0.95418 0.93542 0.93558 1.81200 1.13072 1.08346 1.08247 1.58120 1.66699 1.22984 1.36592 1.21416 1.00840 0.81852 1.01213 1.02216 0.73538 0.72800 0.72961 1.93587 1.65451 1.60355 1.77405 1.93590 1.76591 1.52478 1.72563 1.57975 1.70704 1.22569 1.31352 1.19287 0.95572 0.73938 0.99131 1.21545 0.99090 0.92640 1.44579 0.91407 1.24953 0.97868 0.95557 0.95368 1.69947 1.37224 0.97638 1.47497 0.86596 0.84553 0.78312 0.78847 1.19406 1.21074 1.20820 1.19482 0.94726 0.94378 0.82855 1.23234 0.87400 0.97542 0.99548 1.21667 1.01088 1.02599 0.96235 1.21805 0.96089 1.02913 1.02982 1.23995 0.99725 1.00162 0.88086 1.84152 1.28584 1.54147 1.38880 0.92266 0.88991 0.91489 0.86288 0.87204 0.92970 0.91641 0.90465 0.94504 0.92666 0.92582 0.86626 0.90324 0.83258 0.83858 0.78685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 9.17 37.16 0.34 -1.59 16 2 C 0.15 2.08 2.60 -67.93 -0.18 1.90 16 3 H 0.12 1.91 6.82 -51.93 -0.35 1.56 16 4 C -0.04 -0.38 5.19 -29.52 -0.15 -0.53 16 5 C 0.20 3.03 15.14 -20.76 -0.31 2.72 16 6 N -0.43 -8.02 18.54 42.15 0.78 -7.24 16 7 N -1.01 -15.15 2.83 -114.61 -0.32 -15.48 16 8 C 0.09 1.03 9.41 59.84 0.56 1.59 16 9 S 2.78 55.82 5.96 -107.50 -0.64 55.18 16 10 O -0.98 -21.12 16.60 -57.17 -0.95 -22.07 16 11 O -0.97 -22.96 15.01 -57.17 -0.86 -23.82 16 12 N -0.99 -19.62 2.82 -116.95 -0.33 -19.95 16 13 C 0.24 5.70 5.43 -5.20 -0.03 5.67 16 14 C -0.54 -12.68 8.95 -34.44 -0.31 -12.99 16 15 H 0.07 1.47 6.23 -52.48 -0.33 1.15 16 16 C 0.07 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -24.07 13.29 55.43 0.74 -23.33 16 18 Si 0.89 18.89 29.54 -169.99 -5.02 13.87 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 C 0.21 3.59 5.86 -5.19 -0.03 3.56 16 23 C -0.02 -0.44 6.90 -35.63 -0.25 -0.69 16 24 C -0.20 -3.29 10.81 -39.70 -0.43 -3.72 16 25 C -0.22 -3.27 10.91 -39.70 -0.43 -3.70 16 26 C -0.05 -0.76 12.09 29.42 0.36 -0.41 16 27 O -0.16 -2.99 10.65 5.69 0.06 -2.93 16 28 H 0.06 0.52 6.42 -51.93 -0.33 0.19 16 29 H 0.09 1.38 6.05 -51.93 -0.31 1.06 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.11 0.78 7.62 -51.93 -0.40 0.38 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.72 6.68 -51.92 -0.35 0.37 16 35 H 0.08 0.63 6.18 -51.93 -0.32 0.31 16 36 H 0.04 0.92 8.12 -51.93 -0.42 0.49 16 37 H 0.06 1.48 6.83 -51.93 -0.35 1.13 16 38 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.12 1.78 8.11 -51.93 -0.42 1.36 16 40 H 0.08 1.14 6.49 -51.93 -0.34 0.80 16 41 H 0.15 2.38 8.06 -52.49 -0.42 1.96 16 42 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.20 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -34.73 376.93 -7.42 -42.15 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.60 Total: 4.57 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -0.96 Total: -6.64 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: 0.86 Total: -66.00 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -1.75 Total: -48.81 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Atomic # 16 Polarization: 55.82 SS G_CDS: -0.64 Total: 55.18 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.73 -7.42 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283067869.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.943 kcal (2) G-P(sol) polarization free energy of solvation -34.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds