Wall clock time and date at job start Tue Mar 31 2020 23:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 117.00315 * 2 1 4 4 O 1.20831 * 119.99232 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00312 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47266 * 59.99453 * 5 3 2 7 7 C 1.53004 * 109.47037 * 299.99571 * 5 3 2 8 8 C 1.50700 * 109.47108 * 179.97438 * 5 3 2 9 9 O 1.20767 * 119.99826 * 359.97438 * 8 5 3 10 10 C 1.50705 * 120.00132 * 179.97438 * 8 5 3 11 11 H 1.09000 * 109.46552 * 324.99616 * 10 8 5 12 12 C 1.52995 * 109.47253 * 85.00052 * 10 8 5 13 13 S 1.80995 * 109.47000 * 205.00188 * 10 8 5 14 14 C 1.76199 * 99.99920 * 175.00019 * 13 10 8 15 15 N 1.32386 * 126.25728 * 359.94784 * 14 13 10 16 16 N 1.28518 * 110.20121 * 179.76093 * 15 14 13 17 17 C 1.33096 * 109.74538 * 0.46234 * 16 15 14 18 18 C 1.39784 * 126.56459 * 179.81506 * 17 16 15 19 19 H 1.08001 * 119.99819 * 185.84459 * 18 17 16 20 20 C 1.40078 * 119.99649 * 5.85310 * 18 17 16 21 21 N 1.30812 * 120.00300 * 6.45557 * 20 18 17 22 22 Si 1.86803 * 119.99783 * 186.45815 * 20 18 17 23 23 H 1.48499 * 109.46891 * 265.01128 * 22 20 18 24 24 H 1.48504 * 109.47112 * 25.01069 * 22 20 18 25 25 H 1.48501 * 109.47153 * 145.01299 * 22 20 18 26 26 N 1.36676 * 126.25878 * 180.02562 * 14 13 10 27 27 C 1.46497 * 127.15071 * 359.97438 * 26 14 13 28 28 H 1.09003 * 109.47046 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47264 * 300.00117 * 1 2 3 30 30 H 1.09000 * 109.47072 * 60.00249 * 1 2 3 31 31 H 1.09002 * 109.46580 * 179.97438 * 6 5 3 32 32 H 1.08998 * 109.47239 * 300.00017 * 6 5 3 33 33 H 1.08998 * 109.46826 * 60.00588 * 6 5 3 34 34 H 1.09007 * 109.46926 * 300.00098 * 7 5 3 35 35 H 1.09005 * 109.46891 * 59.99919 * 7 5 3 36 36 H 1.08993 * 109.47183 * 180.02562 * 7 5 3 37 37 H 1.08996 * 109.47111 * 180.02562 * 12 10 8 38 38 H 1.09010 * 109.46915 * 299.99920 * 12 10 8 39 39 H 1.08994 * 109.47358 * 59.99646 * 12 10 8 40 40 H 0.97003 * 120.00374 * 179.97438 * 21 20 18 41 41 H 1.08998 * 109.47611 * 269.96338 * 27 26 14 42 42 H 1.09006 * 109.47430 * 29.96413 * 27 26 14 43 43 H 1.09002 * 109.47054 * 149.96026 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1129 0.5814 -1.2501 7 6 4.1139 0.5811 1.2484 8 6 3.9936 2.7200 -0.0011 9 8 3.1618 3.5956 -0.0015 10 6 5.4588 3.0726 -0.0011 11 1 6.0089 2.3394 0.5887 12 6 5.9842 3.0692 -1.4381 13 16 5.6835 4.7176 0.7195 14 6 7.4431 4.8071 0.7350 15 7 8.2785 3.8708 0.3128 16 7 9.4940 4.2606 0.4620 17 6 9.5132 5.4767 1.0025 18 6 10.6477 6.2296 1.3188 19 1 10.5439 7.1685 1.8423 20 6 11.9190 5.7663 0.9565 21 7 12.0381 4.6961 0.2138 22 14 13.4445 6.6769 1.5340 23 1 13.8804 7.6294 0.4814 24 1 13.1334 7.4236 2.7794 25 1 14.5321 5.7015 1.8001 26 7 8.1953 5.8552 1.1864 27 6 7.7073 7.1171 1.7483 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 5.2014 0.6389 -1.2507 32 1 3.8039 -0.4638 -1.2501 33 1 3.7229 1.0757 -2.1399 34 1 3.7244 1.0751 2.1386 35 1 3.8047 -0.4642 1.2483 36 1 5.2023 0.6385 1.2482 37 1 7.0440 3.3237 -1.4380 38 1 5.8488 2.0784 -1.8720 39 1 5.4340 3.8023 -2.0278 40 1 12.9185 4.3755 -0.0374 41 1 7.5745 7.8443 0.9473 42 1 6.7530 6.9478 2.2472 43 1 8.4313 7.4982 2.4686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286684944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:47 Heat of formation + Delta-G solvation = -45.257643 kcal Electronic energy + Delta-G solvation = -27650.079208 eV Core-core repulsion = 23630.815202 eV Total energy + Delta-G solvation = -4019.264006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.28496 -40.55360 -39.35911 -36.49374 -35.54578 -33.76221 -33.40402 -32.58789 -29.31520 -28.06391 -27.83770 -26.51702 -25.59891 -25.26922 -24.07650 -21.87531 -20.89814 -20.60090 -19.06872 -17.49864 -17.38340 -17.25223 -16.61375 -16.34733 -15.89127 -15.45404 -15.01413 -14.76167 -14.59078 -14.43246 -14.14206 -13.71832 -13.58935 -13.29088 -12.94747 -12.86871 -12.74442 -12.55084 -12.40412 -12.31138 -12.17173 -12.12770 -11.70355 -11.56837 -11.54274 -11.36334 -11.27208 -11.00288 -10.95058 -10.54391 -10.41832 -10.03799 -9.73337 -9.62193 -9.40172 -8.74334 -8.48411 -8.41242 -6.87552 -6.69996 -4.59803 1.61859 1.94151 2.05385 2.39048 2.71337 2.88829 3.04930 3.08676 3.31906 3.69670 3.85055 4.20668 4.29090 4.36618 4.45017 4.51248 4.84448 4.92076 4.95164 5.09623 5.22064 5.27693 5.28245 5.33277 5.35860 5.40952 5.48131 5.54348 5.68728 5.84449 5.88449 5.95390 6.04497 6.06997 6.13572 6.55253 6.74070 6.88451 7.21101 7.30010 7.45626 7.58701 7.84837 8.15155 8.67043 8.82181 10.23464 10.58034 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029021 B = 0.002524 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.592513 B =11092.874349 C =11635.525465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.465 3.535 4 O -0.469 6.469 5 C -0.091 4.091 6 C -0.146 4.146 7 C -0.143 4.143 8 C 0.379 3.621 9 O -0.394 6.394 10 C -0.113 4.113 11 H 0.123 0.877 12 C -0.148 4.148 13 S -0.008 6.008 14 C 0.040 3.960 15 N -0.284 5.284 16 N -0.335 5.335 17 C 0.349 3.651 18 C -0.448 4.448 19 H 0.084 0.916 20 C 0.081 3.919 21 N -0.738 5.738 22 Si 0.919 3.081 23 H -0.270 1.270 24 H -0.262 1.262 25 H -0.274 1.274 26 N -0.513 5.513 27 C 0.101 3.899 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.280 0.720 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.767 -8.415 -0.152 16.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.305 3.695 4 O -0.353 6.353 5 C -0.095 4.095 6 C -0.203 4.203 7 C -0.200 4.200 8 C 0.247 3.753 9 O -0.261 6.261 10 C -0.244 4.244 11 H 0.141 0.859 12 C -0.207 4.207 13 S 0.220 5.780 14 C -0.332 4.332 15 N -0.130 5.130 16 N -0.182 5.182 17 C 0.105 3.895 18 C -0.488 4.488 19 H 0.102 0.898 20 C -0.145 4.145 21 N -0.362 5.362 22 Si 0.743 3.257 23 H -0.195 1.195 24 H -0.186 1.186 25 H -0.199 1.199 26 N -0.215 5.215 27 C -0.044 4.044 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.679 -8.290 -0.493 17.743 hybrid contribution 1.065 0.869 0.487 1.458 sum -14.615 -7.420 -0.006 16.390 Atomic orbital electron populations 1.23268 0.76309 1.03625 1.02644 1.86474 1.23295 1.33210 1.84429 1.23194 0.90976 0.81761 0.73613 1.90804 1.66283 1.35665 1.42551 1.20982 0.89056 0.97582 1.01872 1.22042 1.03268 1.01172 0.93781 1.21914 1.03012 1.01226 0.93816 1.23677 0.89879 0.89100 0.72617 1.90551 1.53850 1.49965 1.31729 1.23625 0.96679 1.00446 1.03612 0.85856 1.22200 1.05094 1.02474 0.90889 1.84950 0.93536 1.19537 1.79952 1.25407 0.97206 0.93301 1.17283 1.74418 0.97961 1.23292 1.17361 1.75406 1.07241 1.09757 1.25805 1.21603 0.81775 0.92109 0.94059 1.18099 0.88084 1.06374 1.36258 0.89787 1.25772 1.00276 0.94852 0.93606 1.69980 1.25604 1.17571 1.23018 0.86126 0.80083 0.79621 0.79853 1.19480 1.18577 1.19894 1.46026 1.06389 1.14561 1.54553 1.21508 0.99671 0.84667 0.98577 0.88006 0.91900 0.91906 0.88937 0.89858 0.91442 0.91409 0.89754 0.89420 0.87995 0.91296 0.91946 0.90946 0.92388 0.91574 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.66 10.37 -39.26 -0.41 -4.07 16 3 C 0.46 5.95 6.55 36.00 0.24 6.19 16 4 O -0.47 -7.73 13.94 -26.86 -0.37 -8.11 16 5 C -0.09 -1.04 0.81 -156.81 -0.13 -1.16 16 6 C -0.15 -1.28 7.32 37.16 0.27 -1.01 16 7 C -0.14 -1.32 8.22 37.16 0.31 -1.01 16 8 C 0.38 5.59 5.20 -29.03 -0.15 5.44 16 9 O -0.39 -7.15 13.97 -18.52 -0.26 -7.41 16 10 C -0.11 -1.79 2.27 -27.88 -0.06 -1.85 16 11 H 0.12 1.87 6.66 -51.92 -0.35 1.52 16 12 C -0.15 -2.27 8.79 37.15 0.33 -1.94 16 13 S -0.01 -0.14 20.54 -107.50 -2.21 -2.35 16 14 C 0.04 0.93 7.77 -87.27 -0.68 0.25 16 15 N -0.28 -7.31 9.74 30.89 0.30 -7.01 16 16 N -0.33 -9.66 10.56 31.26 0.33 -9.33 16 17 C 0.35 9.52 7.50 -154.81 -1.16 8.36 16 18 C -0.45 -11.65 9.05 -38.31 -0.35 -11.99 16 19 H 0.08 1.99 7.27 -52.49 -0.38 1.61 16 20 C 0.08 2.02 5.49 -17.30 -0.09 1.92 16 21 N -0.74 -19.76 12.00 55.56 0.67 -19.10 16 22 Si 0.92 18.21 29.57 -169.99 -5.03 13.19 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 26 N -0.51 -12.23 3.26 -123.18 -0.40 -12.63 16 27 C 0.10 1.85 10.89 59.85 0.65 2.51 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 30 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 31 H 0.09 0.76 5.92 -51.93 -0.31 0.45 16 32 H 0.08 0.58 8.11 -51.93 -0.42 0.16 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 36 H 0.09 0.77 6.83 -51.93 -0.35 0.41 16 37 H 0.10 1.93 5.89 -51.93 -0.31 1.63 16 38 H 0.07 0.82 5.14 -51.92 -0.27 0.55 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16 43 H 0.08 1.34 7.48 -51.93 -0.39 0.96 16 LS Contribution 370.22 15.07 5.58 5.58 Total: -1.00 -35.15 370.22 -7.26 -42.41 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.69 Total: 1.79 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 0.23 Total: 7.03 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.90 Total: -48.06 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -1.04 Total: -19.59 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.19 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -2.21 Total: -2.35 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.15 -7.26 -42.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286684944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.845 kcal (2) G-P(sol) polarization free energy of solvation -35.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds