Wall clock time and date at job start Tue Mar 31 2020 23:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34223 * 117.00505 * 2 1 4 4 O 1.20836 * 119.99706 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00622 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.46939 * 60.00356 * 5 3 2 7 7 C 1.53006 * 109.47294 * 300.00555 * 5 3 2 8 8 C 1.50697 * 109.47407 * 180.02562 * 5 3 2 9 9 O 1.20758 * 120.00302 * 0.02562 * 8 5 3 10 10 C 1.50706 * 120.00026 * 179.97438 * 8 5 3 11 11 H 1.09000 * 109.46509 * 35.00311 * 10 8 5 12 12 C 1.53001 * 109.47294 * 275.00599 * 10 8 5 13 13 S 1.81001 * 109.46906 * 155.00106 * 10 8 5 14 14 C 1.76202 * 99.99784 * 185.00070 * 13 10 8 15 15 N 1.32388 * 126.26021 * 359.97438 * 14 13 10 16 16 N 1.28516 * 110.20609 * 180.02562 * 15 14 13 17 17 C 1.33098 * 109.74302 * 0.02562 * 16 15 14 18 18 C 1.39776 * 126.56257 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99778 * 186.09356 * 18 17 16 20 20 C 1.40085 * 120.00068 * 6.08606 * 18 17 16 21 21 N 1.30808 * 119.99942 * 184.12744 * 20 18 17 22 22 Si 1.86799 * 119.99669 * 4.13543 * 20 18 17 23 23 H 1.48509 * 109.46950 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.47355 * 299.99259 * 22 20 18 25 25 H 1.48501 * 109.47215 * 59.99928 * 22 20 18 26 26 N 1.36669 * 126.25987 * 180.30691 * 14 13 10 27 27 C 1.46505 * 127.15024 * 359.97438 * 26 14 13 28 28 H 1.08997 * 109.47489 * 299.99872 * 1 2 3 29 29 H 1.09006 * 109.47204 * 59.99767 * 1 2 3 30 30 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47043 * 180.02562 * 6 5 3 32 32 H 1.09007 * 109.46406 * 300.00178 * 6 5 3 33 33 H 1.08992 * 109.47108 * 59.99970 * 6 5 3 34 34 H 1.08995 * 109.46714 * 300.00169 * 7 5 3 35 35 H 1.09001 * 109.46776 * 59.99239 * 7 5 3 36 36 H 1.08996 * 109.47256 * 179.97438 * 7 5 3 37 37 H 1.09005 * 109.46831 * 299.99753 * 12 10 8 38 38 H 1.08999 * 109.47296 * 59.99930 * 12 10 8 39 39 H 1.08994 * 109.46693 * 179.97438 * 12 10 8 40 40 H 0.97000 * 120.00392 * 354.84969 * 21 20 18 41 41 H 1.08991 * 109.47295 * 270.14314 * 27 26 14 42 42 H 1.08996 * 109.46934 * 30.14387 * 27 26 14 43 43 H 1.09000 * 109.46691 * 150.13746 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1139 0.5810 -1.2484 7 6 4.1130 0.5813 1.2501 8 6 3.9936 2.7199 0.0011 9 8 3.1620 3.5955 0.0015 10 6 5.4589 3.0724 0.0023 11 1 6.0094 2.3390 -0.5868 12 6 5.9831 3.0692 1.4397 13 16 5.6842 4.7173 -0.7185 14 6 7.4439 4.8067 -0.7326 15 7 8.2789 3.8711 -0.3082 16 7 9.4947 4.2587 -0.4609 17 6 9.5142 5.4770 -0.9965 18 6 10.6490 6.2303 -1.3107 19 1 10.5430 7.2494 -1.6521 20 6 11.9236 5.6634 -1.1827 21 7 12.9882 6.3921 -1.3987 22 14 12.1028 3.8668 -0.7036 23 1 13.5437 3.5137 -0.6367 24 1 11.4760 3.6435 0.6240 25 1 11.4314 3.0147 -1.7177 26 7 8.1964 5.8572 -1.1777 27 6 7.7089 7.1219 -1.7337 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 5.2023 0.6377 -1.2478 32 1 3.8047 -0.4643 -1.2483 33 1 3.7245 1.0749 -2.1385 34 1 3.7228 1.0755 2.1398 35 1 3.8038 -0.4639 1.2502 36 1 5.2014 0.6380 1.2503 37 1 5.4324 3.8026 2.0289 38 1 5.8474 2.0786 1.8738 39 1 7.0429 3.3237 1.4405 40 1 12.8957 7.3027 -1.7197 41 1 7.5992 7.0256 -2.8138 42 1 6.7432 7.3653 -1.2907 43 1 8.4216 7.9157 -1.5101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286684947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:50 Heat of formation + Delta-G solvation = -57.167817 kcal Electronic energy + Delta-G solvation = -27792.116036 eV Core-core repulsion = 23772.335566 eV Total energy + Delta-G solvation = -4019.780470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.36844 -40.99048 -39.45602 -36.56190 -35.64334 -34.01764 -33.64800 -32.76929 -30.00599 -28.12316 -27.92132 -26.78010 -25.53368 -25.27641 -24.17584 -21.96103 -21.49037 -20.37890 -19.17484 -18.24041 -17.56611 -17.35342 -16.79481 -16.67774 -15.99838 -15.34584 -15.14172 -15.05054 -14.75474 -14.30915 -14.02617 -13.76393 -13.68982 -13.36579 -13.08953 -12.96026 -12.85418 -12.71310 -12.67586 -12.61531 -12.28764 -12.25507 -11.98995 -11.81763 -11.64845 -11.61098 -11.13250 -11.06021 -10.84724 -10.62265 -10.22166 -9.90651 -9.62656 -9.49026 -9.43737 -9.15216 -8.71919 -8.44589 -7.46706 -7.15356 -4.88430 1.45020 1.80551 1.97157 2.30233 2.47474 2.85406 3.53048 3.54849 3.58522 3.82790 4.00639 4.09208 4.20804 4.35838 4.36551 4.42432 4.79342 4.83750 4.87233 4.95289 5.06484 5.14607 5.17465 5.22897 5.27804 5.31626 5.36505 5.39310 5.58204 5.70683 5.75993 5.84192 5.89415 5.92341 6.07164 6.28768 6.40163 6.64432 7.07687 7.18925 7.35857 7.48035 7.51524 8.00692 8.30241 8.51300 9.91779 10.05013 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024133 B = 0.002823 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.976958 B = 9915.915727 C =10661.775799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.465 3.535 4 O -0.469 6.469 5 C -0.091 4.091 6 C -0.143 4.143 7 C -0.146 4.146 8 C 0.379 3.621 9 O -0.392 6.392 10 C -0.117 4.117 11 H 0.125 0.875 12 C -0.149 4.149 13 S 0.004 5.996 14 C 0.060 3.940 15 N -0.269 5.269 16 N -0.415 5.415 17 C 0.346 3.654 18 C -0.491 4.491 19 H 0.083 0.917 20 C 0.063 3.937 21 N -0.806 5.806 22 Si 1.114 2.886 23 H -0.312 1.312 24 H -0.260 1.260 25 H -0.280 1.280 26 N -0.511 5.511 27 C 0.100 3.900 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.284 0.716 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.610 -11.379 1.980 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.305 3.695 4 O -0.353 6.353 5 C -0.095 4.095 6 C -0.200 4.200 7 C -0.203 4.203 8 C 0.248 3.752 9 O -0.259 6.259 10 C -0.248 4.248 11 H 0.143 0.857 12 C -0.208 4.208 13 S 0.232 5.768 14 C -0.314 4.314 15 N -0.113 5.113 16 N -0.265 5.265 17 C 0.103 3.897 18 C -0.532 4.532 19 H 0.101 0.899 20 C -0.159 4.159 21 N -0.430 5.430 22 Si 0.942 3.058 23 H -0.242 1.242 24 H -0.186 1.186 25 H -0.207 1.207 26 N -0.212 5.212 27 C -0.044 4.044 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.534 -12.127 2.538 22.294 hybrid contribution -0.837 2.003 -0.755 2.298 sum -19.371 -10.124 1.782 21.929 Atomic orbital electron populations 1.23274 0.76224 1.03674 1.02668 1.86469 1.23353 1.33143 1.84393 1.23163 0.90939 0.81798 0.73648 1.90809 1.66288 1.35661 1.42550 1.20972 0.89174 0.97418 1.01913 1.21918 1.02955 1.01318 0.93809 1.22044 1.03193 1.01267 0.93773 1.23637 0.89708 0.89215 0.72688 1.90558 1.53809 1.49946 1.31636 1.23698 0.97083 1.00306 1.03678 0.85663 1.22212 1.04907 1.02779 0.90877 1.85119 0.92283 1.19763 1.79650 1.25524 0.97755 0.92129 1.15995 1.74157 0.96670 1.23048 1.17380 1.73981 1.10514 1.11294 1.30754 1.21704 0.82995 0.91709 0.93289 1.19404 0.89654 1.00124 1.43987 0.89908 1.27378 0.90074 1.08140 0.90343 1.70671 1.31730 1.11009 1.29600 0.82687 0.71999 0.70506 0.80588 1.24185 1.18550 1.20692 1.45811 1.05923 1.14629 1.54801 1.21560 0.99915 0.84456 0.98473 0.91884 0.91874 0.87966 0.89454 0.89681 0.91363 0.91403 0.89785 0.88982 0.91766 0.91049 0.88174 0.90521 0.92080 0.91104 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.44 10.37 -39.24 -0.41 -3.85 16 3 C 0.46 5.62 6.55 36.00 0.24 5.86 16 4 O -0.47 -7.41 13.94 -26.87 -0.37 -7.79 16 5 C -0.09 -0.96 0.81 -156.81 -0.13 -1.08 16 6 C -0.14 -1.20 8.22 37.16 0.31 -0.89 16 7 C -0.15 -1.15 7.31 37.16 0.27 -0.88 16 8 C 0.38 5.20 5.20 -29.03 -0.15 5.05 16 9 O -0.39 -6.75 13.97 -18.51 -0.26 -7.01 16 10 C -0.12 -1.70 2.27 -27.88 -0.06 -1.76 16 11 H 0.13 1.71 6.66 -51.92 -0.35 1.37 16 12 C -0.15 -2.07 8.79 37.16 0.33 -1.74 16 13 S 0.00 0.07 20.54 -107.50 -2.21 -2.14 16 14 C 0.06 1.30 7.77 -87.28 -0.68 0.63 16 15 N -0.27 -6.42 9.74 30.89 0.30 -6.11 16 16 N -0.42 -11.03 7.52 31.26 0.23 -10.79 16 17 C 0.35 8.98 7.27 -154.81 -1.13 7.86 16 18 C -0.49 -12.92 9.50 -38.31 -0.36 -13.29 16 19 H 0.08 2.13 7.46 -52.49 -0.39 1.73 16 20 C 0.06 1.68 5.52 -17.29 -0.10 1.59 16 21 N -0.81 -21.33 13.65 55.56 0.76 -20.57 16 22 Si 1.11 27.26 25.90 -169.99 -4.40 22.86 16 23 H -0.31 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.26 -6.50 6.76 56.52 0.38 -6.12 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 N -0.51 -11.60 3.26 -123.18 -0.40 -12.00 16 27 C 0.10 1.78 10.89 59.85 0.65 2.43 16 28 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 29 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.67 6.83 -51.93 -0.35 0.32 16 32 H 0.08 0.56 8.11 -51.93 -0.42 0.13 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 36 H 0.09 0.66 5.92 -51.93 -0.31 0.35 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.75 5.14 -51.93 -0.27 0.48 16 39 H 0.10 1.71 5.89 -51.93 -0.31 1.41 16 40 H 0.28 7.14 8.72 -40.82 -0.36 6.78 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 43 H 0.08 1.37 7.48 -51.93 -0.39 0.98 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -33.99 365.70 -6.74 -40.72 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -5.74 Total: -3.93 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 0.25 Total: 5.09 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.89 Total: -49.47 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -1.04 Total: -18.64 kcal Atomic # 14 Polarization: 27.26 SS G_CDS: -4.40 Total: 22.86 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -2.21 Total: -2.14 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.99 -6.74 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286684947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.444 kcal (2) G-P(sol) polarization free energy of solvation -33.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds