Wall clock time and date at job start Tue Mar 31 2020 23:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21290 * 119.99436 * 2 1 4 4 N 1.34770 * 120.00228 * 179.97438 * 2 1 3 5 5 C 1.39925 * 119.99999 * 186.58289 * 4 2 1 6 6 C 1.38895 * 120.06769 * 35.43340 * 5 4 2 7 7 C 1.38090 * 119.92443 * 179.97438 * 6 5 4 8 8 C 1.38301 * 120.07509 * 0.24903 * 7 6 5 9 9 C 1.38262 * 120.13758 * 359.48855 * 8 7 6 10 10 C 1.50703 * 119.96644 * 180.25573 * 9 8 7 11 11 N 1.46508 * 109.47077 * 275.40509 * 10 9 8 12 12 C 1.36934 * 119.99931 * 62.38066 * 11 10 9 13 13 H 1.07992 * 120.00367 * 359.09625 * 12 11 10 14 14 C 1.38811 * 119.99858 * 179.09655 * 12 11 10 15 15 N 1.31625 * 119.99574 * 46.68914 * 14 12 11 16 16 Si 1.86801 * 120.00239 * 226.68729 * 14 12 11 17 17 H 1.48498 * 109.47178 * 89.99992 * 16 14 12 18 18 H 1.48505 * 109.46933 * 210.00288 * 16 14 12 19 19 H 1.48500 * 109.47019 * 330.00191 * 16 14 12 20 20 S 1.65594 * 119.99803 * 242.37667 * 11 10 9 21 21 O 1.42102 * 106.40274 * 344.63052 * 20 11 10 22 22 O 1.42101 * 106.40279 * 117.54740 * 20 11 10 23 23 N 1.65596 * 107.22163 * 231.08818 * 20 11 10 24 24 C 1.46499 * 119.99840 * 75.99090 * 23 20 11 25 25 C 1.46499 * 120.00246 * 255.99327 * 23 20 11 26 26 C 1.38130 * 120.07372 * 0.51921 * 9 8 7 27 27 H 1.08993 * 109.47378 * 239.99559 * 1 2 3 28 28 H 1.09002 * 109.47347 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.47255 * 119.99665 * 1 2 3 30 30 H 0.97005 * 119.99987 * 6.59389 * 4 2 1 31 31 H 1.07994 * 120.03580 * 359.97438 * 6 5 4 32 32 H 1.08006 * 119.96279 * 179.97438 * 7 6 5 33 33 H 1.07999 * 119.93319 * 179.75454 * 8 7 6 34 34 H 1.09001 * 109.47064 * 35.39759 * 10 9 8 35 35 H 1.08991 * 109.47589 * 155.40269 * 10 9 8 36 36 H 0.97003 * 119.99677 * 188.57924 * 15 14 12 37 37 H 1.08995 * 109.47466 * 4.81514 * 24 23 20 38 38 H 1.08998 * 109.46973 * 124.82398 * 24 23 20 39 39 H 1.09009 * 109.46952 * 244.81491 * 24 23 20 40 40 H 1.08998 * 109.47289 * 104.80331 * 25 23 20 41 41 H 1.08991 * 109.47571 * 224.81005 * 25 23 20 42 42 H 1.09004 * 109.46833 * 344.81040 * 25 23 20 43 43 H 1.08002 * 120.04359 * 179.76716 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0505 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5732 -1.1710 0.1394 6 6 4.1937 -0.2347 0.9566 7 6 5.5679 -0.2416 1.0919 8 6 6.3267 -1.1760 0.4110 9 6 5.7117 -2.1127 -0.3989 10 6 6.5419 -3.1328 -1.1346 11 7 7.0235 -2.5555 -2.3921 12 6 7.8531 -1.4662 -2.3720 13 1 8.1407 -1.0238 -1.4297 14 6 8.3244 -0.9307 -3.5627 15 7 7.4951 -0.7183 -4.5626 16 14 10.1354 -0.5114 -3.7462 17 1 10.8654 -1.6909 -4.2763 18 1 10.2869 0.6282 -4.6863 19 1 10.6937 -0.1380 -2.4217 20 16 6.5646 -3.2202 -3.8377 21 8 6.0315 -4.5030 -3.5382 22 8 5.8326 -2.2160 -4.5268 23 7 7.9433 -3.4805 -4.7173 24 6 8.8194 -4.6079 -4.3893 25 6 8.2868 -2.5834 -5.8233 26 6 4.3375 -2.1112 -0.5388 27 1 -0.3634 -0.5139 0.8899 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3634 -0.5138 -0.8901 30 1 1.7007 -2.0045 -0.0956 31 1 3.6020 0.4977 1.4854 32 1 6.0510 0.4864 1.7268 33 1 7.4017 -1.1768 0.5154 34 1 7.3931 -3.4216 -0.5180 35 1 5.9331 -4.0114 -1.3479 36 1 7.8397 -0.4630 -5.4326 37 1 8.3617 -5.2068 -3.6021 38 1 8.9658 -5.2242 -5.2763 39 1 9.7829 -4.2312 -4.0456 40 1 9.0982 -1.9231 -5.5170 41 1 8.6030 -3.1724 -6.6841 42 1 7.4148 -1.9869 -6.0916 43 1 3.8579 -2.8408 -1.1745 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289791206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:40 Heat of formation + Delta-G solvation = -14.611318 kcal Electronic energy + Delta-G solvation = -29181.741044 eV Core-core repulsion = 25163.805962 eV Total energy + Delta-G solvation = -4017.935082 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -40.25929 -38.38503 -36.14541 -35.71617 -35.21516 -34.33467 -34.21481 -32.17438 -30.69023 -30.44521 -28.35224 -27.20264 -26.03214 -23.72940 -23.42007 -22.27218 -21.67322 -19.76454 -18.95489 -17.51703 -17.39651 -16.67722 -16.17062 -15.85647 -15.53830 -15.33380 -15.08897 -14.57698 -14.42828 -14.20062 -13.89216 -13.58488 -13.38617 -13.25383 -12.82649 -12.79254 -12.45711 -12.29874 -12.10165 -11.97289 -11.85835 -11.68482 -11.37189 -11.30941 -11.10688 -10.78614 -10.68367 -10.48021 -10.29714 -10.18425 -10.09237 -9.97208 -9.86664 -9.67655 -9.10734 -8.34445 -7.98915 -7.82575 -7.71469 -6.32252 -3.58307 1.67470 1.77297 2.16908 2.69817 3.18705 3.23127 3.35466 3.37517 4.08457 4.29368 4.38869 4.66133 4.68765 5.01295 5.07980 5.18924 5.29002 5.36666 5.60998 5.61034 5.66819 5.76199 5.84215 5.93538 5.97032 6.05828 6.11351 6.19167 6.30982 6.37343 6.42931 6.43193 6.67633 6.71052 6.76667 6.89616 6.93350 6.99085 7.20977 7.44266 7.51586 7.57391 7.72940 8.19124 8.31216 8.98813 9.37553 10.54531 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015211 B = 0.004173 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.343389 B = 6707.507282 C = 7212.007571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.506 3.494 3 O -0.525 6.525 4 N -0.674 5.674 5 C 0.134 3.866 6 C -0.124 4.124 7 C -0.108 4.108 8 C -0.100 4.100 9 C -0.053 4.053 10 C 0.161 3.839 11 N -0.864 5.864 12 C -0.301 4.301 13 H 0.098 0.902 14 C 0.012 3.988 15 N -0.780 5.780 16 Si 0.863 3.137 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.274 1.274 20 S 2.753 3.247 21 O -1.043 7.043 22 O -0.935 6.935 23 N -0.999 5.999 24 C 0.102 3.898 25 C 0.094 3.906 26 C -0.132 4.132 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.408 0.592 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.272 0.728 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.039 0.961 41 H 0.030 0.970 42 H 0.112 0.888 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.035 -4.743 7.279 10.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.294 3.706 3 O -0.400 6.400 4 N -0.320 5.320 5 C 0.041 3.959 6 C -0.144 4.144 7 C -0.126 4.126 8 C -0.119 4.119 9 C -0.056 4.056 10 C 0.033 3.967 11 N -0.696 5.696 12 C -0.433 4.433 13 H 0.116 0.884 14 C -0.195 4.195 15 N -0.421 5.421 16 Si 0.688 3.312 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.199 1.199 20 S 2.766 3.234 21 O -1.027 7.027 22 O -0.918 6.918 23 N -0.835 5.835 24 C -0.045 4.045 25 C -0.053 4.053 26 C -0.153 4.153 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.244 0.756 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.130 0.870 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.616 -4.049 6.779 10.302 hybrid contribution 1.312 -0.032 -0.231 1.333 sum -5.304 -4.081 6.548 9.363 Atomic orbital electron populations 1.21916 0.91134 1.05730 1.04372 1.20945 0.90720 0.83363 0.75559 1.90770 1.70618 1.31177 1.47431 1.43544 1.05839 1.09665 1.72972 1.17584 0.82220 0.98365 0.97688 1.20875 0.95056 0.99335 0.99163 1.20936 0.93184 0.98549 0.99952 1.21019 0.99903 0.94519 0.96485 1.20024 0.92724 0.97472 0.95342 1.20022 0.96592 0.93203 0.86882 1.53644 1.62191 1.36219 1.17549 1.18668 1.23600 1.06401 0.94608 0.88417 1.25000 0.99126 0.98664 0.96704 1.71338 1.31731 1.35402 1.03592 0.86996 0.88206 0.77647 0.78311 1.20281 1.21442 1.19894 1.03738 0.74677 0.71859 0.73091 1.93407 1.79315 1.44152 1.85798 1.93642 1.69684 1.56617 1.71874 1.57993 1.43159 1.36673 1.45654 1.21195 0.94840 0.88553 0.99952 1.21903 1.02634 0.93384 0.87339 1.20765 0.93740 1.00936 0.99895 0.89250 0.88772 0.89180 0.75628 0.85927 0.86208 0.85752 0.91814 0.89847 0.91539 0.91321 0.93590 0.93578 0.94275 0.95099 0.87000 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.32 36.01 0.37 -1.02 16 2 C 0.51 6.97 7.64 -10.99 -0.08 6.89 16 3 O -0.52 -9.79 14.98 5.55 0.08 -9.71 16 4 N -0.67 -8.99 5.33 -9.86 -0.05 -9.04 16 5 C 0.13 2.28 6.23 -83.69 -0.52 1.76 16 6 C -0.12 -2.13 8.65 -39.39 -0.34 -2.47 16 7 C -0.11 -1.80 10.04 -39.61 -0.40 -2.19 16 8 C -0.10 -1.79 8.69 -39.55 -0.34 -2.13 16 9 C -0.05 -1.00 5.13 -104.65 -0.54 -1.54 16 10 C 0.16 3.17 5.99 -5.19 -0.03 3.14 16 11 N -0.86 -20.27 3.10 -61.09 -0.19 -20.46 16 12 C -0.30 -7.48 8.97 -15.06 -0.14 -7.61 16 13 H 0.10 2.36 6.41 -52.49 -0.34 2.03 16 14 C 0.01 0.30 3.30 -17.43 -0.06 0.24 16 15 N -0.78 -20.81 7.54 55.49 0.42 -20.39 16 16 Si 0.86 19.43 27.17 -169.99 -4.62 14.81 16 17 H -0.28 -6.06 7.04 56.52 0.40 -5.67 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 S 2.75 67.39 5.26 -107.50 -0.57 66.82 16 21 O -1.04 -25.54 15.51 -57.17 -0.89 -26.43 16 22 O -0.94 -26.14 13.79 -57.17 -0.79 -26.92 16 23 N -1.00 -21.91 2.92 -129.21 -0.38 -22.28 16 24 C 0.10 1.85 10.71 59.85 0.64 2.49 16 25 C 0.09 1.97 8.14 59.85 0.49 2.46 16 26 C -0.13 -2.40 9.60 -39.39 -0.38 -2.78 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 29 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.41 3.84 8.83 -40.82 -0.36 3.48 16 31 H 0.12 2.07 6.62 -52.49 -0.35 1.72 16 32 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 33 H 0.12 2.10 7.25 -52.49 -0.38 1.72 16 34 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 35 H 0.08 1.59 6.60 -51.93 -0.34 1.24 16 36 H 0.27 6.77 6.23 -40.82 -0.25 6.52 16 37 H 0.07 1.21 7.25 -51.93 -0.38 0.83 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.04 0.84 3.57 -51.93 -0.19 0.65 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.11 2.56 4.94 -51.93 -0.26 2.30 16 43 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 351.02 15.07 5.29 5.29 Total: -1.00 -34.80 351.02 -8.46 -43.26 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.44 Total: 7.84 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.33 Total: -2.78 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -0.20 Total: -72.18 kcal Atomic # 8 Polarization: -61.47 SS G_CDS: -1.59 Total: -63.06 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.62 Total: 14.81 kcal Atomic # 16 Polarization: 67.39 SS G_CDS: -0.57 Total: 66.82 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.80 -8.46 -43.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289791206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.646 kcal (2) G-P(sol) polarization free energy of solvation -34.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds