Wall clock time and date at job start Tue Mar 31 2020 23:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45201 * 109.46860 * 2 1 4 4 C 1.34230 * 117.00079 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99574 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00076 * 179.97438 * 4 3 2 7 7 C 1.50697 * 109.46966 * 180.02562 * 6 4 3 8 8 C 1.33421 * 125.96724 * 90.00038 * 7 6 4 9 9 N 1.32019 * 114.57175 * 179.97438 * 8 7 6 10 10 C 1.29626 * 116.90662 * 0.02562 * 9 8 7 11 11 N 1.39005 * 124.94071 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00206 * 0.02955 * 11 10 9 13 13 O 1.21579 * 119.99978 * 359.97438 * 12 11 10 14 14 N 1.34784 * 119.99908 * 179.97438 * 12 11 10 15 15 C 1.46493 * 119.99864 * 359.72514 * 14 12 11 16 16 C 1.53000 * 109.47637 * 90.00039 * 15 14 12 17 17 C 1.46494 * 119.99635 * 179.97438 * 14 12 11 18 18 C 1.50694 * 109.47248 * 90.00174 * 17 14 12 19 19 H 1.07999 * 119.99904 * 359.97438 * 18 17 14 20 20 C 1.37883 * 120.00385 * 179.97438 * 18 17 14 21 21 N 1.31514 * 119.99650 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00268 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47439 * 90.00453 * 22 20 18 24 24 H 1.48504 * 109.47008 * 210.00380 * 22 20 18 25 25 H 1.48496 * 109.47181 * 329.99866 * 22 20 18 26 26 S 1.70962 * 110.11012 * 0.22794 * 10 9 8 27 27 H 1.09000 * 109.46432 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47135 * 300.00190 * 1 2 3 29 29 H 1.09000 * 109.46962 * 60.00708 * 1 2 3 30 30 H 1.08999 * 109.47135 * 239.99810 * 2 1 3 31 31 H 1.09004 * 109.46848 * 119.99771 * 2 1 3 32 32 H 1.09001 * 109.46696 * 60.00703 * 6 4 3 33 33 H 1.08999 * 109.47214 * 300.00363 * 6 4 3 34 34 H 1.08001 * 122.71247 * 359.97438 * 8 7 6 35 35 H 0.96999 * 119.99746 * 180.02562 * 11 10 9 36 36 H 1.09002 * 109.47192 * 209.99937 * 15 14 12 37 37 H 1.08996 * 109.47342 * 329.99648 * 15 14 12 38 38 H 1.08994 * 109.47425 * 179.97438 * 16 15 14 39 39 H 1.09002 * 109.46747 * 300.00171 * 16 15 14 40 40 H 1.08996 * 109.47074 * 59.99445 * 16 15 14 41 41 H 1.09003 * 109.47006 * 210.00121 * 17 14 12 42 42 H 1.09004 * 109.47665 * 329.99813 * 17 14 12 43 43 H 0.96998 * 120.00151 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 6 5.4255 2.8587 0.0001 8 6 6.2081 2.8173 -1.0797 9 7 7.5006 2.7502 -0.8187 10 6 7.8466 2.7325 0.4304 11 7 9.1557 2.6641 0.8929 12 6 10.1782 2.6109 0.0165 13 8 9.9556 2.6222 -1.1787 14 7 11.4475 2.5451 0.4650 15 6 11.7160 2.5375 1.9051 16 6 11.7324 1.0945 2.4134 17 6 12.5588 2.4866 -0.4877 18 6 13.0138 3.8854 -0.8152 19 1 12.5238 4.7332 -0.3596 20 6 14.0556 4.0830 -1.6966 21 7 14.6519 3.0506 -2.2517 22 14 14.6200 5.8168 -2.1020 23 1 15.6786 6.2292 -1.1457 24 1 15.1614 5.8506 -3.4844 25 1 13.4688 6.7491 -1.9985 26 16 6.4584 2.7985 1.4260 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.5843 3.4701 0.8896 33 1 3.5851 3.4692 -0.8904 34 1 5.8161 2.8370 -2.0858 35 1 9.3333 2.6548 1.8464 36 1 12.6837 3.0012 2.0967 37 1 10.9365 3.0963 2.4230 38 1 11.9326 1.0889 3.4848 39 1 10.7647 0.6308 2.2218 40 1 12.5119 0.5358 1.8955 41 1 13.3858 1.9293 -0.0475 42 1 12.2298 1.9886 -1.3998 43 1 15.3851 3.1895 -2.8714 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296947929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:30 Heat of formation + Delta-G solvation = -52.708147 kcal Electronic energy + Delta-G solvation = -26636.348226 eV Core-core repulsion = 22616.761141 eV Total energy + Delta-G solvation = -4019.587084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.76199 -40.24304 -38.90110 -36.93739 -35.49396 -34.66752 -32.93004 -32.55629 -31.77943 -30.17069 -27.84503 -26.75813 -24.81123 -23.59193 -23.10072 -22.79557 -21.58892 -20.59500 -19.33388 -18.18420 -18.00928 -17.18563 -16.92650 -16.51093 -16.40174 -16.24556 -15.30565 -15.00693 -14.62334 -14.51449 -14.13555 -14.02814 -13.67575 -13.58822 -13.40964 -13.12870 -13.03964 -12.81690 -12.50029 -12.19622 -12.08002 -11.96967 -11.78615 -11.31827 -11.20999 -10.96135 -10.86961 -10.85582 -10.78102 -10.54535 -10.45021 -10.11841 -9.76464 -9.61170 -9.17620 -8.91941 -8.41757 -8.10554 -7.65685 -6.02577 -4.07082 0.77385 0.99538 1.64318 1.97138 2.37710 2.98965 3.07577 3.31506 3.38624 3.43714 3.94152 4.16296 4.32978 4.47521 4.53537 4.55566 4.65325 4.76837 4.85483 4.88621 5.11322 5.19377 5.31651 5.31807 5.36715 5.51965 5.55857 5.59933 5.64996 5.88769 5.99394 6.14893 6.15930 6.38654 6.44304 6.67051 7.23767 7.47710 7.50918 7.55100 7.93115 8.02542 8.24007 8.51885 8.93392 9.21838 9.58003 11.05366 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020978 B = 0.002236 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.431646 B =12521.152639 C =13087.825797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.456 3.544 5 O -0.491 6.491 6 C -0.019 4.019 7 C -0.266 4.266 8 C 0.106 3.894 9 N -0.477 5.477 10 C 0.320 3.680 11 N -0.648 5.648 12 C 0.691 3.309 13 O -0.518 6.518 14 N -0.605 5.605 15 C 0.105 3.895 16 C -0.172 4.172 17 C 0.262 3.738 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.274 1.274 26 S 0.109 5.891 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.175 0.825 35 H 0.412 0.588 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.036 0.964 42 H 0.046 0.954 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.199 -2.916 11.890 28.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.279 6.279 4 C 0.297 3.703 5 O -0.377 6.377 6 C -0.059 4.059 7 C -0.388 4.388 8 C -0.048 4.048 9 N -0.197 5.197 10 C -0.050 4.050 11 N -0.303 5.303 12 C 0.389 3.611 13 O -0.387 6.387 14 N -0.341 5.341 15 C -0.019 4.019 16 C -0.231 4.231 17 C 0.143 3.857 18 C -0.566 4.566 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.726 3.274 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.199 1.199 26 S 0.359 5.641 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.133 0.867 33 H 0.144 0.856 34 H 0.192 0.808 35 H 0.251 0.749 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.518 -3.322 11.521 27.293 hybrid contribution 0.303 0.725 -0.557 0.963 sum -24.215 -2.597 10.964 26.708 Atomic orbital electron populations 1.21810 0.92579 1.03021 1.03522 1.23033 0.95318 0.80151 1.02758 1.86487 1.24529 1.32520 1.84340 1.23794 0.80503 0.92947 0.73043 1.90729 1.60294 1.42864 1.43825 1.19434 0.88241 0.91282 1.06929 1.24675 0.98083 1.21400 0.94682 1.21597 0.86367 0.97067 0.99721 1.66682 1.16460 1.20817 1.15770 1.23454 0.90344 0.99595 0.91626 1.42778 1.01372 1.75686 1.10512 1.16004 0.80471 0.79570 0.85022 1.91035 1.81962 1.52988 1.12758 1.47663 1.04599 1.75064 1.06784 1.21407 1.02517 0.96173 0.81842 1.22271 1.02370 0.97700 1.00762 1.19262 0.81447 0.97471 0.87565 1.21447 1.16223 0.92518 1.26390 0.92467 1.24925 0.96352 0.97240 0.95566 1.69929 1.23647 1.29656 1.30076 0.86488 0.78691 0.84518 0.77663 1.20688 1.21091 1.19933 1.83601 0.97325 1.72999 1.10158 0.90228 0.91471 0.91423 0.91131 0.91217 0.86704 0.85630 0.80821 0.74929 0.89186 0.92663 0.91936 0.93171 0.91600 0.94603 0.93636 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.29 37.16 0.38 -0.33 16 2 C 0.06 0.45 6.19 37.16 0.23 0.68 16 3 O -0.36 -3.22 10.22 -39.26 -0.40 -3.62 16 4 C 0.46 4.73 7.95 36.01 0.29 5.02 16 5 O -0.49 -6.96 15.78 -18.75 -0.30 -7.26 16 6 C -0.02 -0.15 6.34 -29.04 -0.18 -0.33 16 7 C -0.27 -3.18 5.08 -35.99 -0.18 -3.37 16 8 C 0.11 1.56 11.24 -19.16 -0.22 1.35 16 9 N -0.48 -9.19 8.65 -15.12 -0.13 -9.32 16 10 C 0.32 5.44 8.02 -87.34 -0.70 4.74 16 11 N -0.65 -11.08 5.27 -17.47 -0.09 -11.17 16 12 C 0.69 15.34 8.24 -86.91 -0.72 14.62 16 13 O -0.52 -14.11 14.55 5.30 0.08 -14.04 16 14 N -0.60 -12.89 2.46 -180.81 -0.44 -13.33 16 15 C 0.11 1.62 5.89 -4.05 -0.02 1.60 16 16 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 17 C 0.26 6.86 5.16 -5.20 -0.03 6.83 16 18 C -0.53 -15.02 9.39 -34.44 -0.32 -15.34 16 19 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 22 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 26 S 0.11 1.32 23.22 -107.50 -2.50 -1.17 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 31 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 32 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.17 2.14 8.06 -52.49 -0.42 1.71 16 35 H 0.41 5.36 6.56 -40.82 -0.27 5.09 16 36 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 37 H 0.06 0.68 6.37 -51.93 -0.33 0.35 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.05 1.36 7.42 -51.93 -0.39 0.98 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 385.84 15.07 5.81 5.81 Total: -1.00 -38.24 385.84 -9.46 -47.70 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.02 Total: 0.02 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: -1.19 Total: 15.27 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.07 Total: -59.80 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.62 Total: -24.92 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.50 Total: -1.17 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.24 -9.46 -47.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296947929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.010 kcal (2) G-P(sol) polarization free energy of solvation -38.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds