Wall clock time and date at job start Tue Mar 31 2020 23:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 C 1.50693 * 109.47486 * 179.72204 * 6 4 3 8 8 C 1.33411 * 125.97019 * 89.99787 * 7 6 4 9 9 N 1.32020 * 114.57179 * 179.97438 * 8 7 6 10 10 C 1.29625 * 116.91059 * 0.02562 * 9 8 7 11 11 N 1.39000 * 124.94323 * 179.97438 * 10 9 8 12 12 C 1.34776 * 120.00614 * 359.97438 * 11 10 9 13 13 O 1.21585 * 119.99629 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00318 * 179.97438 * 12 11 10 15 15 C 1.46501 * 120.00014 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47177 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.46913 * 180.02562 * 16 15 14 18 18 C 1.50704 * 109.46648 * 179.97438 * 17 16 15 19 19 H 1.07993 * 120.00151 * 0.02562 * 18 17 16 20 20 C 1.37887 * 119.99734 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99924 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 119.99857 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47433 * 60.00293 * 22 20 18 24 24 H 1.48504 * 109.47147 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47534 * 300.00131 * 22 20 18 26 26 S 1.70968 * 110.10583 * 359.74425 * 10 9 8 27 27 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 29 29 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 30 30 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 31 31 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 32 32 H 1.09004 * 109.46801 * 299.72165 * 6 4 3 33 33 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 34 34 H 1.08003 * 122.71167 * 359.95627 * 8 7 6 35 35 H 0.97007 * 119.99502 * 179.97438 * 11 10 9 36 36 H 0.96997 * 119.99855 * 0.02562 * 14 12 11 37 37 H 1.08999 * 109.47343 * 300.00718 * 15 14 12 38 38 H 1.09001 * 109.46681 * 60.00512 * 15 14 12 39 39 H 1.09004 * 109.46831 * 300.00338 * 16 15 14 40 40 H 1.09001 * 109.47211 * 60.00452 * 16 15 14 41 41 H 1.08993 * 109.47499 * 299.99953 * 17 16 15 42 42 H 1.09000 * 109.47182 * 60.00750 * 17 16 15 43 43 H 0.96997 * 119.99758 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 6 5.4255 2.8585 0.0106 8 6 6.2118 2.8208 -1.0666 9 7 7.5033 2.7528 -0.8014 10 6 7.8452 2.7309 0.4487 11 7 9.1526 2.6609 0.9154 12 6 10.1781 2.6095 0.0424 13 8 9.9595 2.6238 -1.1536 14 7 11.4458 2.5421 0.4949 15 6 12.5604 2.4857 -0.4541 16 6 13.8814 2.4143 0.3143 17 6 15.0454 2.3560 -0.6769 18 6 16.3467 2.2863 0.0801 19 1 16.3437 2.2834 1.1600 20 6 17.5411 2.2251 -0.6062 21 7 17.5447 2.2281 -1.9213 22 14 19.1539 2.1380 0.3320 23 1 19.1665 0.9211 1.1830 24 1 20.2837 2.0803 -0.6300 25 1 19.2939 3.3427 1.1890 26 16 6.4542 2.8070 1.4399 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5137 0.8901 32 1 3.5878 3.4722 -0.8839 33 1 3.5816 3.4669 0.8960 34 1 5.8231 2.8436 -2.0740 35 1 9.3270 2.6491 1.8696 36 1 11.6201 2.5303 1.4490 37 1 12.4578 1.6012 -1.0828 38 1 12.5510 3.3787 -1.0790 39 1 13.9841 3.2986 0.9433 40 1 13.8906 1.5211 0.9390 41 1 14.9430 1.4720 -1.3061 42 1 15.0362 3.2495 -1.3012 43 1 18.3849 2.1855 -2.4041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297164887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:37 Heat of formation + Delta-G solvation = -72.404974 kcal Electronic energy + Delta-G solvation = -25255.209562 eV Core-core repulsion = 21234.768359 eV Total energy + Delta-G solvation = -4020.441203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95864 -40.59201 -39.21739 -37.10745 -35.77769 -34.89193 -33.40794 -32.97284 -31.98248 -31.12408 -27.85402 -26.69253 -25.04937 -23.75674 -23.13120 -22.03523 -21.33704 -20.66213 -19.65710 -19.29058 -18.18592 -17.45523 -17.33233 -16.74158 -16.61935 -16.25760 -15.93392 -15.12739 -14.79850 -14.74948 -14.64328 -14.40914 -14.11331 -13.94883 -13.68675 -13.44909 -13.21308 -13.05743 -12.34051 -12.28702 -12.09227 -11.85310 -11.84325 -11.58369 -11.06880 -11.00150 -10.89381 -10.77154 -10.75870 -10.63378 -10.43406 -9.87687 -9.58521 -9.47362 -9.37217 -9.14477 -8.89231 -8.37267 -8.36376 -6.01756 -4.05151 0.45040 0.66166 1.34252 1.79713 2.18588 2.46562 2.72948 3.31968 3.33155 3.36959 3.38584 3.85716 4.11838 4.39083 4.42390 4.44225 4.50358 4.55696 4.60789 4.77500 4.91058 5.19808 5.26240 5.33956 5.35879 5.45998 5.58612 5.66332 5.77070 5.99847 6.05584 6.14183 6.36883 6.50487 6.58479 6.83933 6.98189 7.33754 7.55676 7.62988 7.75593 7.93716 7.96641 8.37046 8.53900 9.01223 9.58991 11.09466 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.038201 B = 0.001444 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.796196 B =19383.246176 C =19489.770883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.360 6.360 4 C 0.457 3.543 5 O -0.492 6.492 6 C -0.022 4.022 7 C -0.257 4.257 8 C 0.101 3.899 9 N -0.475 5.475 10 C 0.308 3.692 11 N -0.646 5.646 12 C 0.692 3.308 13 O -0.526 6.526 14 N -0.733 5.733 15 C 0.134 3.866 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.524 4.524 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 S 0.128 5.872 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.177 0.823 35 H 0.417 0.583 36 H 0.395 0.605 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.994 1.056 9.237 37.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.278 6.278 4 C 0.298 3.702 5 O -0.378 6.378 6 C -0.062 4.062 7 C -0.380 4.380 8 C -0.052 4.052 9 N -0.196 5.196 10 C -0.062 4.062 11 N -0.299 5.299 12 C 0.389 3.611 13 O -0.396 6.396 14 N -0.388 5.388 15 C 0.012 3.988 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.563 4.563 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 S 0.379 5.621 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.194 0.806 35 H 0.254 0.746 36 H 0.229 0.771 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -35.421 0.718 8.613 36.461 hybrid contribution 0.931 -0.320 0.554 1.130 sum -34.490 0.398 9.167 35.690 Atomic orbital electron populations 1.21812 0.92480 1.03115 1.03566 1.23052 0.95398 0.79965 1.02807 1.86485 1.24354 1.32688 1.84229 1.23709 0.80630 0.92799 0.73077 1.90733 1.60327 1.42865 1.43906 1.19467 0.88004 0.91552 1.07174 1.24788 0.98418 1.20036 0.94727 1.21583 0.86136 0.97563 0.99911 1.66637 1.16963 1.20274 1.15696 1.23339 0.90114 1.00795 0.91977 1.42306 1.01401 1.75882 1.10359 1.16049 0.80526 0.79154 0.85332 1.91072 1.82726 1.53080 1.12762 1.45409 1.04039 1.78566 1.10821 1.21621 0.83727 1.02241 0.91243 1.21907 0.93186 1.00920 0.99828 1.19026 0.90716 0.97757 0.93863 1.21159 0.91100 1.51057 0.92944 0.92695 1.25023 0.99263 0.95244 0.94848 1.69954 1.26801 1.50287 1.06146 0.86642 0.83077 0.78582 0.79584 1.20260 1.21256 1.20247 1.83737 0.96702 1.72094 1.09540 0.90149 0.91440 0.91386 0.91079 0.91159 0.85442 0.86513 0.80576 0.74567 0.77117 0.91591 0.91567 0.92645 0.92648 0.96182 0.96181 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 10.29 37.15 0.38 -0.16 16 2 C 0.06 0.37 6.19 37.15 0.23 0.60 16 3 O -0.36 -2.63 10.22 -39.26 -0.40 -3.03 16 4 C 0.46 3.84 7.95 36.00 0.29 4.13 16 5 O -0.49 -6.01 15.78 -18.76 -0.30 -6.30 16 6 C -0.02 -0.12 6.34 -29.04 -0.18 -0.31 16 7 C -0.26 -2.35 5.08 -36.00 -0.18 -2.53 16 8 C 0.10 1.16 11.24 -19.16 -0.22 0.95 16 9 N -0.48 -7.26 8.65 -15.12 -0.13 -7.39 16 10 C 0.31 3.95 8.02 -87.35 -0.70 3.25 16 11 N -0.65 -7.63 5.41 -17.48 -0.09 -7.73 16 12 C 0.69 10.92 8.53 -86.92 -0.74 10.18 16 13 O -0.53 -10.84 14.97 5.29 0.08 -10.76 16 14 N -0.73 -10.35 5.56 -65.23 -0.36 -10.72 16 15 C 0.13 2.36 5.67 -4.04 -0.02 2.34 16 16 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 17 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 18 C -0.52 -14.57 9.11 -34.43 -0.31 -14.89 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 22 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 S 0.13 1.15 23.22 -107.50 -2.50 -1.35 16 27 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.18 1.62 8.06 -52.48 -0.42 1.20 16 35 H 0.42 3.06 8.84 -40.82 -0.36 2.70 16 36 H 0.40 4.17 8.49 -40.82 -0.35 3.83 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 389.33 15.07 5.87 5.87 Total: -1.00 -38.18 389.33 -10.12 -48.31 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.17 Total: -0.38 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -1.84 Total: 3.13 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.15 Total: -51.90 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.62 Total: -20.09 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.50 Total: -1.35 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.18 -10.12 -48.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297164887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.100 kcal (2) G-P(sol) polarization free energy of solvation -38.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds