Wall clock time and date at job start Tue Mar 31 2020 23:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46716 * 2 1 4 4 C 1.36939 * 119.99498 * 274.28304 * 3 2 1 5 5 H 1.07999 * 120.00324 * 324.76668 * 4 3 2 6 6 C 1.38810 * 120.00056 * 144.77404 * 4 3 2 7 7 N 1.31621 * 119.99785 * 344.35765 * 6 4 3 8 8 Si 1.86799 * 120.00371 * 164.36005 * 6 4 3 9 9 H 1.48498 * 109.47090 * 90.00004 * 8 6 4 10 10 H 1.48496 * 109.46953 * 209.99654 * 8 6 4 11 11 H 1.48497 * 109.47075 * 330.00017 * 8 6 4 12 12 C 1.46499 * 120.00189 * 94.28581 * 3 2 1 13 13 H 1.09004 * 109.47123 * 184.73097 * 12 3 2 14 14 C 1.52994 * 109.47099 * 304.73035 * 12 3 2 15 15 C 1.50699 * 109.46956 * 64.73374 * 12 3 2 16 16 O 1.21287 * 120.00266 * 359.97438 * 15 12 3 17 17 N 1.34782 * 119.99666 * 179.97438 * 15 12 3 18 18 C 1.39924 * 119.99827 * 175.54216 * 17 15 12 19 19 C 1.38892 * 120.07253 * 324.50060 * 18 17 15 20 20 C 1.38096 * 119.93210 * 179.70033 * 19 18 17 21 21 C 1.38304 * 120.06516 * 0.59197 * 20 19 18 22 22 C 1.38266 * 120.14377 * 359.67920 * 21 20 19 23 23 S 1.76204 * 119.96538 * 179.97438 * 22 21 20 24 24 N 1.65598 * 107.21421 * 270.02497 * 23 22 21 25 25 O 1.42103 * 106.39968 * 23.56350 * 23 22 21 26 26 O 1.42097 * 106.39948 * 156.48637 * 23 22 21 27 27 C 1.38135 * 120.06856 * 0.02562 * 22 21 20 28 28 H 1.09002 * 109.47026 * 180.02562 * 1 2 3 29 29 H 1.08988 * 109.47835 * 300.00361 * 1 2 3 30 30 H 1.08999 * 109.47000 * 60.00758 * 1 2 3 31 31 H 1.09002 * 109.47577 * 239.99589 * 2 1 3 32 32 H 1.08999 * 109.47000 * 119.99242 * 2 1 3 33 33 H 0.97005 * 120.00481 * 180.02562 * 7 6 4 34 34 H 1.08996 * 109.47195 * 300.00462 * 14 12 3 35 35 H 1.09004 * 109.47083 * 60.00037 * 14 12 3 36 36 H 1.08996 * 109.47138 * 179.97438 * 14 12 3 37 37 H 0.96995 * 119.99949 * 355.26930 * 17 15 12 38 38 H 1.08001 * 120.03425 * 359.96879 * 19 18 17 39 39 H 1.07992 * 119.96642 * 180.29598 * 20 19 18 40 40 H 1.08006 * 119.92887 * 179.70642 * 21 20 19 41 41 H 0.96993 * 120.00312 * 359.97438 * 24 23 22 42 42 H 0.97003 * 119.99276 * 180.02562 * 24 23 22 43 43 H 1.07994 * 120.03525 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1629 2.0562 -1.1827 5 1 2.4798 1.5288 -2.0702 6 6 1.9023 3.4184 -1.2408 7 7 1.2324 4.0023 -0.2698 8 14 2.5021 4.4230 -2.6969 9 1 1.4607 4.4308 -3.7555 10 1 2.7735 5.8158 -2.2592 11 1 3.7490 3.8209 -3.2336 12 6 2.3517 2.0403 1.2651 13 1 2.6143 3.0810 1.0746 14 6 1.1451 1.9825 2.2039 15 6 3.5205 1.3366 1.9053 16 8 4.0249 0.3785 1.3588 17 7 4.0052 1.7719 3.0852 18 6 5.0285 1.0639 3.7251 19 6 5.0682 -0.3224 3.6497 20 6 6.0829 -1.0178 4.2773 21 6 7.0521 -0.3360 4.9905 22 6 7.0122 1.0436 5.0722 23 16 8.2490 1.9075 5.9827 24 7 7.7047 2.0442 7.5407 25 8 9.3839 1.0535 6.0276 26 8 8.2887 3.2259 5.4543 27 6 6.0033 1.7454 4.4416 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8898 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.0499 4.9541 -0.3104 34 1 0.2997 2.4915 1.7408 35 1 0.8825 0.9419 2.3945 36 1 1.3933 2.4724 3.1454 37 1 3.6475 2.5781 3.4887 38 1 4.3087 -0.8557 3.0973 39 1 6.1170 -2.0954 4.2150 40 1 7.8420 -0.8825 5.4844 41 1 6.8424 1.6750 7.7874 42 1 8.2480 2.4943 8.2064 43 1 5.9729 2.8231 4.5054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299339106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:54 Heat of formation + Delta-G solvation = -57.448125 kcal Electronic energy + Delta-G solvation = -27954.218595 eV Core-core repulsion = 23934.425970 eV Total energy + Delta-G solvation = -4019.792625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.33292 -38.51554 -37.30105 -36.00661 -35.95618 -34.45060 -33.45789 -31.93022 -31.42710 -31.14108 -29.27292 -28.34739 -24.36222 -23.87681 -23.39893 -22.28089 -21.03216 -19.83896 -19.38459 -18.57560 -17.63175 -17.33371 -16.78964 -16.43853 -16.17535 -15.90841 -15.29372 -15.09403 -14.64341 -14.18775 -14.12507 -13.85139 -13.59694 -13.33903 -13.07096 -12.43268 -12.40700 -12.33066 -12.25387 -12.17455 -11.98458 -11.81806 -11.66537 -11.51410 -11.21923 -11.11459 -11.02368 -10.77828 -10.76937 -10.47991 -10.27422 -10.20187 -9.88302 -9.74132 -9.47522 -9.00836 -8.62941 -8.15307 -6.73067 -5.97073 -3.45216 0.18707 0.68783 1.13708 2.87568 3.09992 3.26409 3.37389 3.39836 3.40326 3.43542 3.68555 4.37934 4.40761 4.71640 4.86408 5.05534 5.15366 5.28313 5.30916 5.35409 5.57681 5.68882 5.70681 5.81846 6.10661 6.12848 6.16581 6.20347 6.25933 6.36829 6.42235 6.49496 6.54133 6.69189 6.71325 6.95107 6.98729 7.07358 7.19745 7.30004 7.71524 7.73302 8.37234 8.66430 9.07475 9.66836 10.23552 11.10382 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015971 B = 0.002953 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.772526 B = 9479.973727 C =10366.488538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.150 3.850 3 N -0.559 5.559 4 C -0.253 4.253 5 H 0.064 0.936 6 C 0.010 3.990 7 N -0.897 5.897 8 Si 0.902 3.098 9 H -0.285 1.285 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.172 3.828 13 H 0.127 0.873 14 C -0.140 4.140 15 C 0.488 3.512 16 O -0.519 6.519 17 N -0.687 5.687 18 C 0.148 3.852 19 C -0.064 4.064 20 C -0.120 4.120 21 C -0.047 4.047 22 C -0.656 4.656 23 S 2.704 3.296 24 N -1.251 6.251 25 O -0.966 6.966 26 O -0.963 6.963 27 C -0.058 4.058 28 H 0.030 0.970 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.257 0.743 34 H 0.084 0.916 35 H 0.037 0.963 36 H 0.036 0.964 37 H 0.410 0.590 38 H 0.142 0.858 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.417 0.583 42 H 0.419 0.581 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.230 -5.204 17.657 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.025 3.975 3 N -0.277 5.277 4 C -0.383 4.383 5 H 0.082 0.918 6 C -0.189 4.189 7 N -0.540 5.540 8 Si 0.731 3.269 9 H -0.211 1.211 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.060 3.940 13 H 0.144 0.856 14 C -0.199 4.199 15 C 0.276 3.724 16 O -0.392 6.392 17 N -0.335 5.335 18 C 0.051 3.949 19 C -0.084 4.084 20 C -0.140 4.140 21 C -0.067 4.067 22 C -0.744 4.744 23 S 2.794 3.206 24 N -0.925 5.925 25 O -0.955 6.955 26 O -0.952 6.952 27 C -0.080 4.080 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.247 0.753 38 H 0.160 0.840 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.244 0.756 42 H 0.249 0.751 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.324 -5.414 16.611 18.944 hybrid contribution -0.688 0.692 -0.308 1.024 sum 6.636 -4.721 16.302 18.223 Atomic orbital electron populations 1.22408 0.99592 0.98482 1.02171 1.20757 0.91398 0.86608 0.98784 1.43474 1.72346 1.10324 1.01562 1.19144 1.39344 0.91450 0.88390 0.91785 1.25175 0.97506 0.98422 0.97810 1.69925 1.39721 1.10716 1.33624 0.86305 0.78957 0.79374 0.82240 1.21133 1.21399 1.20329 1.20363 0.88185 0.99117 0.86329 0.85619 1.22106 1.00448 1.00042 0.97271 1.23960 0.85596 0.84726 0.78125 1.90589 1.59246 1.27843 1.61524 1.44367 1.36514 1.29694 1.22892 1.17995 0.90292 0.91623 0.94997 1.21585 0.98507 0.92846 0.95497 1.21183 0.94611 1.00471 0.97697 1.20846 0.97593 0.91827 0.96479 1.30214 1.18324 1.05947 1.19959 1.01438 0.72993 0.73748 0.72454 1.53077 1.33200 1.76173 1.30093 1.93595 1.47607 1.68183 1.86133 1.93613 1.85838 1.37615 1.78174 1.20702 0.90787 1.00025 0.96499 0.95130 0.93229 0.92679 0.94180 0.94321 0.93353 0.89675 0.94354 0.94455 0.75347 0.84000 0.84778 0.84231 0.75637 0.75145 0.83828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 9.99 37.16 0.37 -2.87 16 2 C 0.15 3.22 5.07 -4.04 -0.02 3.20 16 3 N -0.56 -13.33 2.09 -166.98 -0.35 -13.68 16 4 C -0.25 -6.71 9.53 -15.06 -0.14 -6.85 16 5 H 0.06 1.74 7.88 -52.49 -0.41 1.32 16 6 C 0.01 0.26 4.90 -17.43 -0.09 0.18 16 7 N -0.90 -23.28 11.06 55.49 0.61 -22.67 16 8 Si 0.90 20.94 29.58 -169.99 -5.03 15.91 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.17 3.66 2.20 -69.09 -0.15 3.50 16 13 H 0.13 2.97 5.89 -51.93 -0.31 2.67 16 14 C -0.14 -2.55 7.88 37.15 0.29 -2.26 16 15 C 0.49 9.54 6.62 -10.98 -0.07 9.47 16 16 O -0.52 -11.57 12.79 5.55 0.07 -11.49 16 17 N -0.69 -10.53 5.19 -9.86 -0.05 -10.58 16 18 C 0.15 2.14 6.24 -83.69 -0.52 1.62 16 19 C -0.06 -0.90 8.65 -39.39 -0.34 -1.24 16 20 C -0.12 -1.38 10.04 -39.61 -0.40 -1.78 16 21 C -0.05 -0.51 9.52 -39.55 -0.38 -0.88 16 22 C -0.66 -7.31 5.94 -39.61 -0.24 -7.54 16 23 S 2.70 27.02 6.28 -107.50 -0.68 26.34 16 24 N -1.25 -6.85 9.55 60.35 0.58 -6.28 16 25 O -0.97 -12.35 17.28 -57.17 -0.99 -13.33 16 26 O -0.96 -13.04 17.28 -57.17 -0.99 -14.03 16 27 C -0.06 -0.73 9.44 -39.39 -0.37 -1.10 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.95 5.91 -51.94 -0.31 0.64 16 30 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.04 0.80 6.70 -51.93 -0.35 0.45 16 33 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 34 H 0.08 1.77 7.71 -51.93 -0.40 1.37 16 35 H 0.04 0.67 6.57 -51.93 -0.34 0.33 16 36 H 0.04 0.55 7.68 -51.93 -0.40 0.16 16 37 H 0.41 5.13 8.39 -40.82 -0.34 4.79 16 38 H 0.14 2.20 6.56 -52.49 -0.34 1.86 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 40 H 0.14 1.21 7.61 -52.48 -0.40 0.81 16 41 H 0.42 1.37 8.92 -34.47 -0.31 1.06 16 42 H 0.42 1.58 8.96 -34.46 -0.31 1.27 16 43 H 0.14 1.60 7.61 -52.49 -0.40 1.20 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -34.57 365.54 -8.80 -43.37 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.44 Total: 7.49 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -2.05 Total: -6.56 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.79 Total: -53.21 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -1.90 Total: -38.86 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Atomic # 16 Polarization: 27.02 SS G_CDS: -0.68 Total: 26.34 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.57 -8.80 -43.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299339106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.075 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds