Wall clock time and date at job start Tue Mar 31 2020 23:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47277 * 2 1 4 4 C 1.36946 * 120.00024 * 86.51766 * 3 2 1 5 5 H 1.08007 * 119.99968 * 222.92227 * 4 3 2 6 6 C 1.38810 * 119.99994 * 42.91872 * 4 3 2 7 7 N 1.31613 * 120.00092 * 211.83466 * 6 4 3 8 8 Si 1.86802 * 119.99624 * 31.83397 * 6 4 3 9 9 H 1.48494 * 109.47096 * 94.19183 * 8 6 4 10 10 H 1.48500 * 109.47044 * 214.18897 * 8 6 4 11 11 H 1.48500 * 109.47375 * 334.18860 * 8 6 4 12 12 C 1.46503 * 120.00561 * 266.51839 * 3 2 1 13 13 H 1.08993 * 109.47347 * 175.76686 * 12 3 2 14 14 C 1.52998 * 109.46990 * 55.76287 * 12 3 2 15 15 C 1.50702 * 109.46867 * 295.77084 * 12 3 2 16 16 O 1.21293 * 120.00087 * 14.64786 * 15 12 3 17 17 N 1.34776 * 120.00072 * 194.65584 * 15 12 3 18 18 C 1.39925 * 120.00240 * 184.26529 * 17 15 12 19 19 C 1.38896 * 120.06715 * 324.32429 * 18 17 15 20 20 C 1.38091 * 119.92440 * 180.02562 * 19 18 17 21 21 C 1.38302 * 120.07258 * 0.02562 * 20 19 18 22 22 C 1.38258 * 120.14069 * 359.95573 * 21 20 19 23 23 S 1.76201 * 119.96215 * 180.02562 * 22 21 20 24 24 N 1.65598 * 107.22135 * 270.02355 * 23 22 21 25 25 O 1.42101 * 106.40336 * 23.56433 * 23 22 21 26 26 O 1.42100 * 106.40167 * 156.48552 * 23 22 21 27 27 C 1.38125 * 120.07142 * 0.04759 * 22 21 20 28 28 H 1.09005 * 109.47228 * 305.97736 * 1 2 3 29 29 H 1.09004 * 109.47032 * 65.97518 * 1 2 3 30 30 H 1.09000 * 109.47278 * 185.97597 * 1 2 3 31 31 H 1.08995 * 109.46848 * 240.00242 * 2 1 3 32 32 H 1.08999 * 109.46863 * 120.00426 * 2 1 3 33 33 H 0.97002 * 120.00038 * 180.02562 * 7 6 4 34 34 H 1.09006 * 109.46859 * 60.00494 * 14 12 3 35 35 H 1.08999 * 109.47283 * 180.02562 * 14 12 3 36 36 H 1.09000 * 109.47152 * 300.00642 * 14 12 3 37 37 H 0.96998 * 119.99505 * 4.26403 * 17 15 12 38 38 H 1.07996 * 120.03844 * 359.97438 * 19 18 17 39 39 H 1.08002 * 119.96446 * 179.97438 * 20 19 18 40 40 H 1.08001 * 119.92885 * 179.97438 * 21 20 19 41 41 H 0.96998 * 120.00303 * 149.99815 * 24 23 22 42 42 H 0.97006 * 120.00025 * 330.00545 * 24 23 22 43 43 H 1.08000 * 120.03500 * 179.69877 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1787 2.0507 1.1838 5 1 1.8598 3.0791 1.2701 6 6 2.7510 1.4078 2.2728 7 7 2.3785 1.7250 3.4946 8 14 4.0498 0.0924 2.0041 9 1 5.3997 0.7057 2.0853 10 1 3.9180 -0.9542 3.0494 11 1 3.8641 -0.5202 0.6642 12 6 2.3352 2.0462 -1.2663 13 1 2.6089 3.0834 -1.0735 14 6 1.1122 2.0037 -2.1847 15 6 3.4873 1.3378 -1.9312 16 8 3.8216 0.2353 -1.5519 17 7 4.1464 1.9295 -2.9470 18 6 5.1571 1.2370 -3.6229 19 6 5.9893 0.3681 -2.9289 20 6 6.9861 -0.3135 -3.5988 21 6 7.1566 -0.1312 -4.9591 22 6 6.3296 0.7327 -5.6528 23 16 6.5507 0.9609 -7.3860 24 7 7.6162 2.2130 -7.5837 25 8 7.2083 -0.2048 -7.8635 26 8 5.3025 1.4123 -7.8936 27 6 5.3307 1.4175 -4.9886 28 1 -0.3634 0.6037 0.8317 29 1 -0.3633 0.4184 -0.9387 30 1 -0.3634 -1.0221 0.1070 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.7786 1.2760 4.2557 34 1 0.2789 2.5160 -1.7038 35 1 1.3481 2.4981 -3.1270 36 1 0.8385 0.9664 -2.3775 37 1 3.9200 2.8354 -3.2096 38 1 5.8574 0.2262 -1.8665 39 1 7.6338 -0.9890 -3.0597 40 1 7.9372 -0.6651 -5.4806 41 1 8.1990 2.2362 -8.3587 42 1 7.6576 2.9233 -6.9243 43 1 4.6882 2.0959 -5.5302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299339109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:57 Heat of formation + Delta-G solvation = -52.118863 kcal Electronic energy + Delta-G solvation = -28058.635224 eV Core-core repulsion = 24039.073693 eV Total energy + Delta-G solvation = -4019.561531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.48092 -38.67610 -37.40771 -36.15268 -36.07213 -34.58731 -33.53554 -32.31845 -31.45775 -31.16200 -29.52319 -28.76808 -24.51622 -23.84853 -23.36263 -22.42737 -21.41338 -19.94616 -19.52286 -18.64389 -17.68618 -17.12044 -17.02448 -16.67599 -16.32167 -15.78888 -15.46011 -15.23993 -15.03303 -14.40798 -14.26536 -14.09274 -13.65751 -13.28339 -13.04848 -12.55116 -12.52442 -12.43877 -12.35881 -12.30442 -12.26179 -12.06043 -11.86756 -11.84666 -11.52781 -11.34740 -11.20899 -10.81898 -10.72759 -10.47498 -10.46556 -10.18130 -9.83372 -9.63916 -9.47656 -8.97766 -8.51203 -8.27424 -6.83450 -6.17224 -3.55957 0.12057 0.63899 1.06320 2.81034 2.95858 3.16963 3.30795 3.39344 3.52118 3.58645 3.75217 4.27522 4.55179 4.62175 4.80527 4.84993 4.99450 5.08636 5.22709 5.23605 5.46001 5.51193 5.61752 5.67561 5.71431 5.75271 5.99241 6.09629 6.11783 6.19108 6.29100 6.34035 6.42994 6.44455 6.59996 6.66249 6.70405 6.87553 7.00282 7.24512 7.53083 7.95166 8.29054 8.49993 8.90734 9.60295 10.04698 10.96232 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020312 B = 0.002991 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.138652 B = 9357.856071 C =10026.560008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.148 3.852 3 N -0.569 5.569 4 C -0.292 4.292 5 H 0.075 0.925 6 C 0.060 3.940 7 N -0.876 5.876 8 Si 0.834 3.166 9 H -0.294 1.294 10 H -0.298 1.298 11 H -0.222 1.222 12 C 0.153 3.847 13 H 0.095 0.905 14 C -0.154 4.154 15 C 0.487 3.513 16 O -0.506 6.506 17 N -0.686 5.686 18 C 0.142 3.858 19 C -0.064 4.064 20 C -0.121 4.121 21 C -0.042 4.042 22 C -0.660 4.660 23 S 2.706 3.294 24 N -1.249 6.249 25 O -0.965 6.965 26 O -0.962 6.962 27 C -0.059 4.059 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.265 0.735 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.409 0.591 38 H 0.149 0.851 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.420 0.580 42 H 0.417 0.583 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.200 2.579 -20.034 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.023 3.977 3 N -0.289 5.289 4 C -0.420 4.420 5 H 0.093 0.907 6 C -0.145 4.145 7 N -0.513 5.513 8 Si 0.660 3.340 9 H -0.221 1.221 10 H -0.225 1.225 11 H -0.145 1.145 12 C 0.041 3.959 13 H 0.113 0.887 14 C -0.213 4.213 15 C 0.274 3.726 16 O -0.378 6.378 17 N -0.334 5.334 18 C 0.045 3.955 19 C -0.085 4.085 20 C -0.141 4.141 21 C -0.062 4.062 22 C -0.748 4.748 23 S 2.794 3.206 24 N -0.923 5.923 25 O -0.955 6.955 26 O -0.951 6.951 27 C -0.081 4.081 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.245 0.755 38 H 0.166 0.834 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.249 0.751 42 H 0.244 0.756 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.785 1.104 -20.102 21.965 hybrid contribution 1.235 0.158 0.806 1.483 sum 10.020 1.263 -19.295 21.779 Atomic orbital electron populations 1.22393 0.99351 0.99540 1.01466 1.21053 0.91401 0.85508 0.99745 1.44050 1.72257 1.12147 1.00444 1.18608 1.37921 0.99309 0.86117 0.90748 1.25599 0.96706 0.97330 0.94830 1.70015 1.39669 1.43150 0.98493 0.87496 0.83391 0.82484 0.80629 1.22142 1.22484 1.14483 1.20827 0.89640 0.97305 0.88119 0.88698 1.22238 0.98724 1.02274 0.98066 1.23686 0.84324 0.87100 0.77507 1.90662 1.66273 1.20385 1.60464 1.44317 1.35538 1.18208 1.35298 1.17971 0.90181 0.96510 0.90797 1.21811 0.90970 0.93758 1.01966 1.21244 0.98451 1.00072 0.94315 1.20841 0.96657 0.94177 0.94558 1.30336 1.07791 1.11324 1.25373 1.01413 0.73237 0.72776 0.73138 1.53146 1.60056 1.42374 1.36701 1.93592 1.75357 1.47380 1.79137 1.93614 1.42874 1.81373 1.77257 1.20660 0.96266 0.98679 0.92515 0.92055 0.93798 0.94551 0.93157 0.93550 0.92537 0.91047 0.93201 0.92394 0.75507 0.83375 0.84777 0.84265 0.75052 0.75564 0.83909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 9.94 37.16 0.37 -2.86 16 2 C 0.15 3.23 3.69 -4.04 -0.01 3.21 16 3 N -0.57 -12.68 1.69 -166.98 -0.28 -12.96 16 4 C -0.29 -7.68 9.64 -15.06 -0.15 -7.82 16 5 H 0.08 2.08 8.06 -52.48 -0.42 1.66 16 6 C 0.06 1.68 5.08 -17.43 -0.09 1.59 16 7 N -0.88 -25.85 13.97 55.49 0.78 -25.08 16 8 Si 0.83 21.40 26.41 -169.99 -4.49 16.91 16 9 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 10 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 11 H -0.22 -5.62 4.41 56.52 0.25 -5.37 16 12 C 0.15 2.71 3.11 -69.08 -0.21 2.49 16 13 H 0.10 1.58 7.89 -51.93 -0.41 1.17 16 14 C -0.15 -2.23 8.07 37.16 0.30 -1.93 16 15 C 0.49 8.49 6.82 -10.98 -0.07 8.42 16 16 O -0.51 -10.60 10.31 5.55 0.06 -10.54 16 17 N -0.69 -9.14 5.33 -9.86 -0.05 -9.19 16 18 C 0.14 1.91 6.29 -83.69 -0.53 1.38 16 19 C -0.06 -0.93 8.69 -39.39 -0.34 -1.28 16 20 C -0.12 -1.44 10.04 -39.61 -0.40 -1.84 16 21 C -0.04 -0.45 9.52 -39.55 -0.38 -0.82 16 22 C -0.66 -6.83 5.97 -39.62 -0.24 -7.07 16 23 S 2.71 24.49 6.28 -107.50 -0.68 23.81 16 24 N -1.25 -5.95 9.52 60.35 0.57 -5.38 16 25 O -0.96 -11.50 17.28 -57.17 -0.99 -12.49 16 26 O -0.96 -11.77 17.28 -57.17 -0.99 -12.76 16 27 C -0.06 -0.66 9.44 -39.40 -0.37 -1.03 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.04 0.75 5.99 -51.93 -0.31 0.44 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 1.08 6.24 -51.93 -0.32 0.76 16 32 H 0.05 1.12 4.77 -51.93 -0.25 0.87 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.89 6.44 -51.93 -0.33 0.55 16 37 H 0.41 3.94 8.82 -40.82 -0.36 3.58 16 38 H 0.15 2.53 6.28 -52.49 -0.33 2.20 16 39 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.14 1.20 7.61 -52.49 -0.40 0.80 16 41 H 0.42 1.29 8.96 -34.47 -0.31 0.98 16 42 H 0.42 1.15 8.96 -34.47 -0.31 0.84 16 43 H 0.14 1.30 7.62 -52.49 -0.40 0.90 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -36.96 359.55 -8.33 -45.29 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.56 Total: 4.52 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -2.12 Total: -7.54 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 1.01 Total: -52.61 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -1.92 Total: -35.79 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.49 Total: 16.91 kcal Atomic # 16 Polarization: 24.49 SS G_CDS: -0.68 Total: 23.81 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.96 -8.33 -45.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299339109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.829 kcal (2) G-P(sol) polarization free energy of solvation -36.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds