Wall clock time and date at job start Tue Mar 31 2020 23:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47290 * 2 1 4 4 C 1.36938 * 120.00094 * 274.33887 * 3 2 1 5 5 H 1.08005 * 119.99565 * 324.78377 * 4 3 2 6 6 C 1.38806 * 120.00266 * 144.78995 * 4 3 2 7 7 N 1.31620 * 119.99979 * 344.11059 * 6 4 3 8 8 Si 1.86803 * 120.00317 * 164.11544 * 6 4 3 9 9 H 1.48503 * 109.46644 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47557 * 119.99516 * 8 6 4 11 11 H 1.48497 * 109.46976 * 239.99917 * 8 6 4 12 12 C 1.46502 * 119.99932 * 94.33527 * 3 2 1 13 13 H 1.09004 * 109.46927 * 184.76290 * 12 3 2 14 14 C 1.53000 * 109.47054 * 304.76450 * 12 3 2 15 15 C 1.50699 * 109.47192 * 64.76752 * 12 3 2 16 16 O 1.21287 * 119.99967 * 359.97438 * 15 12 3 17 17 N 1.34774 * 120.00130 * 180.02562 * 15 12 3 18 18 C 1.39925 * 119.99926 * 184.69731 * 17 15 12 19 19 C 1.38865 * 120.07025 * 35.27889 * 18 17 15 20 20 C 1.38116 * 119.92912 * 180.02562 * 19 18 17 21 21 C 1.38283 * 120.06781 * 359.97438 * 20 19 18 22 22 S 1.76202 * 119.92498 * 179.72762 * 21 20 19 23 23 N 1.65606 * 107.21812 * 90.00626 * 22 21 20 24 24 O 1.42106 * 106.40094 * 203.54073 * 22 21 20 25 25 O 1.42098 * 106.40374 * 336.46057 * 22 21 20 26 26 C 1.38277 * 120.14408 * 0.02562 * 21 20 19 27 27 C 1.38120 * 120.06961 * 359.97438 * 26 21 20 28 28 H 1.09003 * 109.46966 * 300.00307 * 1 2 3 29 29 H 1.08999 * 109.47154 * 59.99903 * 1 2 3 30 30 H 1.09003 * 109.47371 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46966 * 239.99693 * 2 1 3 32 32 H 1.08999 * 109.47154 * 120.00097 * 2 1 3 33 33 H 0.97000 * 120.00457 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.46688 * 180.02562 * 14 12 3 35 35 H 1.09001 * 109.46989 * 299.99810 * 14 12 3 36 36 H 1.08996 * 109.47101 * 60.00211 * 14 12 3 37 37 H 0.97005 * 120.00074 * 4.69496 * 17 15 12 38 38 H 1.08000 * 120.03793 * 359.97438 * 19 18 17 39 39 H 1.08001 * 119.96407 * 179.97438 * 20 19 18 40 40 H 0.96999 * 120.00027 * 150.00314 * 23 22 21 41 41 H 0.97001 * 119.99641 * 329.99342 * 23 22 21 42 42 H 1.08004 * 119.96922 * 179.97438 * 26 21 20 43 43 H 1.07994 * 120.03081 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1620 2.0566 -1.1825 5 1 2.4779 1.5293 -2.0706 6 6 1.9019 3.4189 -1.2398 7 7 1.2290 4.0017 -0.2702 8 14 2.5066 4.4251 -2.6928 9 1 3.2321 3.5405 -3.6397 10 1 1.3468 5.0444 -3.3831 11 1 3.4221 5.4901 -2.2106 12 6 2.3530 2.0398 1.2651 13 1 2.6149 3.0806 1.0747 14 6 1.1473 1.9810 2.2052 15 6 3.5227 1.3362 1.9037 16 8 4.0269 0.3786 1.3562 17 7 4.0079 1.7705 3.0837 18 6 5.1536 1.1806 3.6288 19 6 6.1758 0.7456 2.7956 20 6 7.3053 0.1632 3.3367 21 6 7.4190 0.0136 4.7067 22 16 8.8584 -0.7364 5.3925 23 7 9.9516 0.4736 5.6809 24 8 8.4786 -1.2454 6.6638 25 8 9.4168 -1.5457 4.3666 26 6 6.4029 0.4457 5.5391 27 6 5.2709 1.0289 5.0042 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.0474 4.9537 -0.3100 34 1 1.3962 2.4715 3.1463 35 1 0.3013 2.4900 1.7432 36 1 0.8854 0.9402 2.3956 37 1 3.5628 2.4921 3.5552 38 1 6.0874 0.8618 1.7255 39 1 8.1004 -0.1757 2.6891 40 1 10.5874 0.3895 6.4086 41 1 9.9561 1.2665 5.1220 42 1 6.4945 0.3270 6.6087 43 1 4.4775 1.3657 5.6549 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299365863.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:01 Heat of formation + Delta-G solvation = -60.005747 kcal Electronic energy + Delta-G solvation = -27794.683357 eV Core-core repulsion = 23774.779825 eV Total energy + Delta-G solvation = -4019.903532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.36951 -38.52193 -37.28211 -36.03098 -35.94534 -34.55024 -33.42325 -31.96667 -31.23589 -31.14176 -29.43317 -28.38437 -24.44325 -23.94238 -23.08940 -22.39873 -20.91432 -19.73395 -19.49639 -18.51596 -17.83215 -17.56099 -16.89241 -16.60099 -16.31892 -15.60091 -14.93241 -14.83644 -14.63370 -14.37162 -13.98437 -13.79596 -13.48648 -13.43576 -13.13734 -13.02302 -12.42598 -12.34463 -12.22194 -12.11603 -12.01167 -11.69840 -11.53552 -11.52550 -11.24413 -11.12136 -11.05296 -10.84568 -10.67930 -10.52151 -10.36746 -10.23763 -9.92870 -9.74654 -9.23019 -9.00621 -8.67642 -8.35705 -6.77178 -6.01063 -3.49220 0.26499 0.71565 1.24487 2.89367 3.12008 3.20989 3.31615 3.35895 3.39633 3.44111 3.70428 4.35259 4.35956 4.73013 4.76553 5.12426 5.17262 5.26363 5.33608 5.42143 5.59810 5.71500 5.82930 5.83573 6.05047 6.07623 6.12960 6.23055 6.23520 6.34889 6.45139 6.48718 6.53312 6.70477 6.76365 6.91574 6.98067 7.03438 7.16640 7.29120 7.62741 7.69866 8.33131 8.58599 9.03297 9.62742 10.19955 11.06346 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018527 B = 0.002671 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.947931 B =10478.942934 C =10948.270268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 N -0.559 5.559 4 C -0.252 4.252 5 H 0.066 0.934 6 C 0.009 3.991 7 N -0.897 5.897 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.288 1.288 12 C 0.174 3.826 13 H 0.128 0.872 14 C -0.143 4.143 15 C 0.486 3.514 16 O -0.511 6.511 17 N -0.688 5.688 18 C 0.227 3.773 19 C -0.147 4.147 20 C -0.001 4.001 21 C -0.708 4.708 22 S 2.707 3.293 23 N -1.251 6.251 24 O -0.969 6.969 25 O -0.965 6.965 26 C 0.003 3.997 27 C -0.180 4.180 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.030 0.970 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.256 0.744 34 H 0.036 0.964 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.412 0.588 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.418 0.582 41 H 0.417 0.583 42 H 0.141 0.859 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.682 -1.172 13.906 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.023 3.977 3 N -0.277 5.277 4 C -0.382 4.382 5 H 0.084 0.916 6 C -0.190 4.190 7 N -0.540 5.540 8 Si 0.732 3.268 9 H -0.200 1.200 10 H -0.215 1.215 11 H -0.215 1.215 12 C 0.061 3.939 13 H 0.145 0.855 14 C -0.201 4.201 15 C 0.274 3.726 16 O -0.383 6.383 17 N -0.334 5.334 18 C 0.128 3.872 19 C -0.168 4.168 20 C -0.021 4.021 21 C -0.798 4.798 22 S 2.796 3.204 23 N -0.924 5.924 24 O -0.959 6.959 25 O -0.954 6.954 26 C -0.017 4.017 27 C -0.201 4.201 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.104 0.896 36 H 0.058 0.942 37 H 0.248 0.752 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.248 0.752 41 H 0.244 0.756 42 H 0.159 0.841 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.876 -2.751 13.493 17.548 hybrid contribution -0.217 1.920 -0.631 2.033 sum 10.659 -0.831 12.862 16.725 Atomic orbital electron populations 1.22401 0.99528 0.98554 1.02137 1.20781 0.91459 0.86516 0.98934 1.43505 1.72274 1.10367 1.01562 1.19212 1.39242 0.91387 0.88386 0.91630 1.25191 0.97516 0.98473 0.97835 1.69939 1.39636 1.10649 1.33757 0.86222 0.78302 0.80040 0.82253 1.20045 1.21471 1.21459 1.20386 0.88249 0.98903 0.86336 0.85474 1.22147 1.00613 1.00172 0.97217 1.24067 0.86331 0.84018 0.78171 1.90616 1.60164 1.26458 1.61086 1.44607 1.26561 1.38203 1.24047 1.18337 0.86166 0.90484 0.92170 1.21365 0.92188 1.01771 1.01509 1.20816 0.97374 0.91432 0.92519 1.30325 1.21250 1.24650 1.03580 1.01292 0.73052 0.72590 0.73448 1.53182 1.53006 1.38935 1.47246 1.93577 1.83109 1.77563 1.41666 1.93607 1.77302 1.64986 1.59541 1.20637 0.91105 0.90632 0.99328 1.21051 1.00064 1.05368 0.93652 0.93236 0.92683 0.95065 0.94088 0.94202 0.93404 0.94533 0.89604 0.94215 0.75161 0.83691 0.84062 0.75218 0.75609 0.84110 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 9.99 37.16 0.37 -2.89 16 2 C 0.15 3.21 5.06 -4.04 -0.02 3.19 16 3 N -0.56 -13.18 2.09 -166.98 -0.35 -13.53 16 4 C -0.25 -6.55 9.52 -15.06 -0.14 -6.70 16 5 H 0.07 1.75 7.88 -52.48 -0.41 1.34 16 6 C 0.01 0.23 4.90 -17.43 -0.09 0.15 16 7 N -0.90 -22.88 11.08 55.49 0.61 -22.27 16 8 Si 0.90 20.43 29.58 -169.99 -5.03 15.40 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.17 3.62 2.22 -69.08 -0.15 3.47 16 13 H 0.13 2.93 5.90 -51.93 -0.31 2.62 16 14 C -0.14 -2.59 7.87 37.16 0.29 -2.30 16 15 C 0.49 9.35 6.61 -10.99 -0.07 9.28 16 16 O -0.51 -11.32 12.79 5.55 0.07 -11.25 16 17 N -0.69 -10.24 5.26 -9.87 -0.05 -10.29 16 18 C 0.23 3.25 6.24 -83.70 -0.52 2.72 16 19 C -0.15 -2.22 8.65 -39.39 -0.34 -2.56 16 20 C 0.00 -0.02 9.51 -39.61 -0.38 -0.39 16 21 C -0.71 -7.99 5.98 -39.55 -0.24 -8.22 16 22 S 2.71 27.08 6.28 -107.50 -0.68 26.41 16 23 N -1.25 -7.09 9.52 60.35 0.57 -6.52 16 24 O -0.97 -12.22 17.27 -57.17 -0.99 -13.21 16 25 O -0.97 -13.03 17.28 -57.17 -0.99 -14.02 16 26 C 0.00 0.03 9.51 -39.61 -0.38 -0.34 16 27 C -0.18 -2.08 9.97 -39.39 -0.39 -2.48 16 28 H 0.05 0.96 5.92 -51.93 -0.31 0.65 16 29 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 32 H 0.04 0.85 6.70 -51.93 -0.35 0.50 16 33 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 34 H 0.04 0.53 7.47 -51.93 -0.39 0.14 16 35 H 0.09 1.77 7.71 -51.93 -0.40 1.37 16 36 H 0.04 0.70 6.57 -51.93 -0.34 0.36 16 37 H 0.41 4.90 8.11 -40.82 -0.33 4.57 16 38 H 0.15 2.48 6.55 -52.49 -0.34 2.14 16 39 H 0.14 1.58 7.61 -52.49 -0.40 1.18 16 40 H 0.42 1.61 8.96 -34.48 -0.31 1.31 16 41 H 0.42 1.57 8.96 -34.47 -0.31 1.26 16 42 H 0.14 1.22 7.61 -52.48 -0.40 0.82 16 43 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 365.18 15.07 5.50 5.50 Total: -1.00 -33.86 365.18 -8.79 -42.65 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.42 Total: 8.21 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -2.06 Total: -7.08 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.79 Total: -52.61 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -1.90 Total: -38.48 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Atomic # 16 Polarization: 27.08 SS G_CDS: -0.68 Total: 26.41 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.86 -8.79 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299365863.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.357 kcal (2) G-P(sol) polarization free energy of solvation -33.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds