Wall clock time and date at job start Tue Mar 31 2020 23:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35581 * 125.68444 * 2 1 4 4 C 1.35484 * 108.88575 * 180.02562 * 3 2 1 5 5 S 1.76201 * 126.06194 * 179.97438 * 4 3 2 6 6 O 1.42094 * 106.40255 * 336.46829 * 5 4 3 7 7 O 1.42097 * 106.40323 * 203.54162 * 5 4 3 8 8 N 1.65603 * 107.21410 * 90.00456 * 5 4 3 9 9 C 1.46921 * 120.63325 * 270.02491 * 8 5 4 10 10 C 1.53197 * 108.77358 * 233.58793 * 9 8 5 11 11 C 1.53036 * 109.30994 * 305.35847 * 10 9 8 12 12 C 1.53041 * 109.53814 * 61.36925 * 11 10 9 13 13 C 1.46932 * 120.62899 * 89.99872 * 8 5 4 14 14 C 1.39803 * 107.87661 * 0.22876 * 4 3 2 15 15 C 1.37678 * 125.68294 * 180.02562 * 2 1 3 16 16 C 1.46551 * 126.23720 * 359.97438 * 15 2 1 17 17 O 1.21741 * 119.99978 * 5.37895 * 16 15 2 18 18 N 1.34768 * 119.99776 * 185.38502 * 16 15 2 19 19 C 1.36877 * 120.00056 * 185.19426 * 18 16 15 20 20 H 1.07994 * 120.00161 * 359.97438 * 19 18 16 21 21 C 1.39016 * 120.00075 * 179.97438 * 19 18 16 22 22 N 1.31395 * 119.99825 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99987 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47392 * 89.99820 * 23 21 19 25 25 H 1.48499 * 109.46867 * 209.99939 * 23 21 19 26 26 H 1.48496 * 109.46842 * 329.99541 * 23 21 19 27 27 H 1.08992 * 109.46718 * 85.95621 * 1 2 3 28 28 H 1.08997 * 109.46693 * 205.95868 * 1 2 3 29 29 H 1.08997 * 109.46919 * 325.95855 * 1 2 3 30 30 H 1.08007 * 125.55976 * 0.03866 * 3 2 1 31 31 H 1.08994 * 109.59077 * 113.80056 * 9 8 5 32 32 H 1.08997 * 109.58602 * 353.37072 * 9 8 5 33 33 H 1.08997 * 109.49492 * 185.41199 * 10 9 8 34 34 H 1.08995 * 109.49787 * 65.31523 * 10 9 8 35 35 H 1.09010 * 109.46082 * 181.38521 * 11 10 9 36 36 H 1.08996 * 109.46369 * 301.34517 * 11 10 9 37 37 H 1.09003 * 109.50057 * 58.58157 * 12 11 10 38 38 H 1.09001 * 109.50107 * 178.67895 * 12 11 10 39 39 H 1.09000 * 109.58884 * 6.62792 * 13 8 5 40 40 H 1.08997 * 109.58794 * 246.20012 * 13 8 5 41 41 H 1.07998 * 126.45899 * 179.77130 * 14 4 3 42 42 H 0.97009 * 120.00337 * 5.18859 * 18 16 15 43 43 H 0.97006 * 119.99912 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2559 1.1012 0.0000 4 6 3.5530 0.7097 -0.0006 5 16 4.9576 1.7735 -0.0014 6 8 4.5226 3.0119 -0.5457 7 8 6.0317 1.0195 -0.5463 8 7 5.3491 2.0696 1.5802 9 6 4.7625 3.2109 2.2956 10 6 5.8941 4.0502 2.8971 11 6 6.7828 3.1549 3.7635 12 6 7.4039 2.0574 2.8963 13 6 6.2894 1.1955 2.2948 14 6 3.5793 -0.6881 -0.0063 15 6 2.2681 -1.1183 -0.0005 16 6 1.8133 -2.5114 -0.0006 17 8 0.6266 -2.7643 -0.0990 18 7 2.7089 -3.5126 0.1084 19 6 2.2973 -4.8137 0.0017 20 1 1.2549 -5.0380 -0.1694 21 6 3.2212 -5.8464 0.1137 22 7 4.4896 -5.5735 0.3214 23 14 2.6596 -7.6220 -0.0327 24 1 2.7285 -8.0475 -1.4537 25 1 3.5428 -8.4896 0.7873 26 1 1.2610 -7.7403 0.4522 27 1 -0.3632 0.0725 -1.0251 28 1 -0.3632 -0.9240 0.4498 29 1 -0.3633 0.8515 0.5753 30 1 1.9087 2.1240 0.0006 31 1 4.1134 2.8481 3.0925 32 1 4.1853 3.8204 1.6003 33 1 5.4707 4.8454 3.5106 34 1 6.4892 4.4867 2.0950 35 1 7.5747 3.7546 4.2124 36 1 6.1820 2.6994 4.5505 37 1 7.9848 2.5126 2.0941 38 1 8.0551 1.4343 3.5092 39 1 6.7198 0.4752 1.5990 40 1 5.7648 0.6684 3.0916 41 1 4.4598 -1.3134 -0.0116 42 1 3.6453 -3.3112 0.2624 43 1 5.1343 -6.2941 0.3991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299665592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:19 Heat of formation + Delta-G solvation = -70.366686 kcal Electronic energy + Delta-G solvation = -28102.032878 eV Core-core repulsion = 24081.680062 eV Total energy + Delta-G solvation = -4020.352816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.03446 -38.49528 -37.80628 -37.03488 -35.61548 -34.23734 -32.80237 -32.54047 -31.38428 -31.19919 -29.14839 -26.53254 -25.17311 -24.60035 -23.43224 -22.03839 -21.17764 -20.56030 -19.19801 -18.56386 -18.20062 -17.50599 -17.10877 -15.90249 -15.59193 -15.30148 -15.24457 -14.68067 -14.63025 -14.46335 -14.44988 -14.10977 -13.76424 -13.69064 -13.51337 -13.22316 -12.72179 -12.60182 -12.41174 -12.20419 -12.11440 -11.94367 -11.87815 -11.78828 -11.69075 -11.35055 -11.19723 -11.15115 -10.92580 -10.73890 -10.57039 -10.49816 -10.37650 -9.70962 -9.14103 -8.90087 -8.67337 -8.20122 -8.01092 -6.60722 -3.96958 0.63808 1.90503 2.32777 2.95214 3.13191 3.18586 3.24023 3.28054 4.00027 4.05229 4.18846 4.43623 4.54289 4.70990 4.74998 4.77367 4.97815 5.01769 5.06296 5.11317 5.19261 5.22750 5.37245 5.40764 5.50895 5.56403 5.61978 5.67148 5.76775 5.80577 5.87344 5.87954 5.90200 6.05105 6.14105 6.17828 6.29226 6.58727 6.86166 7.10721 7.35287 7.38248 7.86977 8.40944 8.97078 9.32344 9.83835 10.55656 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013666 B = 0.003324 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.400881 B = 8421.968654 C = 9604.576586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.402 5.402 3 C 0.107 3.893 4 C -0.747 4.747 5 S 2.721 3.279 6 O -0.971 6.971 7 O -0.958 6.958 8 N -0.999 5.999 9 C 0.118 3.882 10 C -0.132 4.132 11 C -0.118 4.118 12 C -0.132 4.132 13 C 0.117 3.883 14 C -0.090 4.090 15 C 0.000 4.000 16 C 0.489 3.511 17 O -0.606 6.606 18 N -0.529 5.529 19 C -0.300 4.300 20 H 0.108 0.892 21 C 0.027 3.973 22 N -0.884 5.884 23 Si 0.936 3.064 24 H -0.275 1.275 25 H -0.281 1.281 26 H -0.268 1.268 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.178 0.822 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.155 0.845 42 H 0.398 0.602 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.763 17.736 6.942 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.073 5.073 3 C -0.036 4.036 4 C -0.843 4.843 5 S 2.813 3.187 6 O -0.962 6.962 7 O -0.949 6.949 8 N -0.837 5.837 9 C -0.007 4.007 10 C -0.171 4.171 11 C -0.156 4.156 12 C -0.171 4.171 13 C -0.008 4.008 14 C -0.115 4.115 15 C -0.114 4.114 16 C 0.277 3.723 17 O -0.495 6.495 18 N -0.162 5.162 19 C -0.430 4.430 20 H 0.126 0.874 21 C -0.177 4.177 22 N -0.523 5.523 23 Si 0.762 3.238 24 H -0.201 1.201 25 H -0.206 1.206 26 H -0.192 1.192 27 H 0.095 0.905 28 H 0.132 0.868 29 H 0.097 0.903 30 H 0.195 0.805 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.173 0.827 42 H 0.232 0.768 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.183 17.644 6.161 18.815 hybrid contribution -0.244 -1.124 0.323 1.195 sum 1.939 16.519 6.483 17.851 Atomic orbital electron populations 1.22377 0.75813 1.05780 1.03866 1.44187 1.07205 1.05267 1.50653 1.21568 0.88695 0.91918 1.01416 1.30704 1.14308 1.09501 1.29806 1.00852 0.73241 0.72866 0.71739 1.93515 1.83595 1.42964 1.76080 1.93554 1.52663 1.72974 1.75677 1.57759 1.56787 1.37533 1.31609 1.21418 0.95467 0.86669 0.97153 1.21867 0.97584 0.97885 0.99760 1.21485 0.99056 0.97144 0.97904 1.21874 0.97674 0.97846 0.99743 1.21475 0.89745 0.92133 0.97483 1.20904 0.95873 0.91815 1.02904 1.20890 0.89544 0.88883 1.12043 1.16430 0.86481 0.82390 0.86999 1.90595 1.16034 1.84025 1.58850 1.41611 1.09848 1.05243 1.59516 1.19779 0.96400 0.80450 1.46344 0.87393 1.25404 0.94845 1.00998 0.96488 1.69611 1.01550 1.34501 1.46648 0.85759 0.78795 0.80710 0.78488 1.20092 1.20626 1.19208 0.90480 0.86782 0.90344 0.80529 0.91468 0.89001 0.90930 0.91401 0.91945 0.91752 0.91416 0.90698 0.88490 0.91189 0.82733 0.76786 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.87 10.64 59.85 0.64 1.50 16 2 N -0.40 -6.80 3.16 -120.21 -0.38 -7.18 16 3 C 0.11 1.56 11.13 -16.88 -0.19 1.38 16 4 C -0.75 -11.99 6.18 -39.98 -0.25 -12.23 16 5 S 2.72 39.77 5.87 -107.50 -0.63 39.14 16 6 O -0.97 -15.24 16.44 -57.17 -0.94 -16.18 16 7 O -0.96 -16.86 16.46 -57.17 -0.94 -17.80 16 8 N -1.00 -11.45 3.29 -113.52 -0.37 -11.82 16 9 C 0.12 1.08 6.48 -3.71 -0.02 1.05 16 10 C -0.13 -1.03 6.08 -26.61 -0.16 -1.19 16 11 C -0.12 -0.89 5.88 -26.69 -0.16 -1.04 16 12 C -0.13 -1.15 6.08 -26.61 -0.16 -1.31 16 13 C 0.12 1.24 6.48 -3.71 -0.02 1.22 16 14 C -0.09 -1.68 10.14 -39.09 -0.40 -2.08 16 15 C 0.00 0.00 6.89 -81.98 -0.56 -0.57 16 16 C 0.49 11.93 7.71 -12.91 -0.10 11.83 16 17 O -0.61 -15.99 14.24 5.15 0.07 -15.91 16 18 N -0.53 -13.50 5.25 -12.21 -0.06 -13.56 16 19 C -0.30 -8.14 9.67 -15.01 -0.15 -8.29 16 20 H 0.11 3.03 7.16 -52.49 -0.38 2.66 16 21 C 0.03 0.70 5.50 -17.45 -0.10 0.60 16 22 N -0.88 -23.27 13.05 55.50 0.72 -22.54 16 23 Si 0.94 20.21 29.55 -169.99 -5.02 15.19 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.11 1.88 6.21 -51.93 -0.32 1.56 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.18 1.88 8.06 -52.48 -0.42 1.46 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.82 6.92 -51.93 -0.36 0.46 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 1.12 6.92 -51.93 -0.36 0.77 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.16 2.83 7.49 -52.49 -0.39 2.43 16 42 H 0.40 9.76 6.85 -40.82 -0.28 9.48 16 43 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 366.81 15.07 5.53 5.53 Total: -1.00 -33.99 366.81 -9.53 -43.52 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -5.87 Total: 10.75 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -1.63 Total: -9.13 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.09 Total: -55.11 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: -1.81 Total: -49.89 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 39.77 SS G_CDS: -0.63 Total: 39.14 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.99 -9.53 -43.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299665592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.842 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds