Wall clock time and date at job start Tue Mar 31 2020 23:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99781 * 2 1 4 4 C 1.34779 * 119.99973 * 179.97438 * 2 1 3 5 5 O 1.21693 * 119.99668 * 5.73444 * 4 2 1 6 6 C 1.46673 * 119.99781 * 185.73219 * 4 2 1 7 7 C 1.37871 * 126.23427 * 7.38282 * 6 4 2 8 8 C 1.39840 * 107.08115 * 179.84965 * 7 6 4 9 9 S 1.76198 * 126.06383 * 180.16133 * 8 7 6 10 10 O 1.42099 * 106.40714 * 23.81145 * 9 8 7 11 11 O 1.42102 * 106.40345 * 156.73501 * 9 8 7 12 12 N 1.65609 * 107.21683 * 270.27440 * 9 8 7 13 13 C 1.36936 * 120.00220 * 90.00206 * 12 9 8 14 14 H 1.07994 * 119.99949 * 232.54901 * 13 12 9 15 15 C 1.38813 * 120.00072 * 52.54165 * 13 12 9 16 16 N 1.31619 * 119.99697 * 22.80973 * 15 13 12 17 17 Si 1.86799 * 119.99835 * 202.81523 * 15 13 12 18 18 H 1.48493 * 109.47363 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47106 * 120.00351 * 17 15 13 20 20 H 1.48503 * 109.46766 * 239.99924 * 17 15 13 21 21 C 1.46500 * 119.99802 * 270.00192 * 12 9 8 22 22 C 1.53002 * 117.49698 * 193.37250 * 21 12 9 23 23 C 1.52998 * 117.49942 * 124.71367 * 21 12 9 24 24 C 1.35446 * 107.86852 * 0.41259 * 8 7 6 25 25 N 1.35535 * 108.87001 * 359.74531 * 24 8 7 26 26 C 1.46501 * 125.67586 * 179.97438 * 25 24 8 27 27 H 1.09002 * 109.46862 * 89.99778 * 1 2 3 28 28 H 1.09001 * 109.46848 * 330.00370 * 1 2 3 29 29 H 1.09000 * 109.47269 * 209.99820 * 1 2 3 30 30 H 1.09000 * 109.47258 * 95.25979 * 3 2 1 31 31 H 1.09004 * 109.47116 * 215.25136 * 3 2 1 32 32 H 1.08998 * 109.47667 * 335.25214 * 3 2 1 33 33 H 1.07998 * 126.45973 * 359.97438 * 7 6 4 34 34 H 0.97004 * 120.00100 * 184.92542 * 16 15 13 35 35 H 1.08996 * 115.55101 * 339.04330 * 21 12 9 36 36 H 1.08999 * 117.50167 * 0.02562 * 22 21 12 37 37 H 1.09005 * 117.49761 * 145.02258 * 22 21 12 38 38 H 1.09006 * 117.50123 * 214.97937 * 23 21 12 39 39 H 1.09002 * 117.50005 * 359.97162 * 23 21 12 40 40 H 1.08001 * 125.56787 * 179.72586 * 24 8 7 41 41 H 1.09000 * 109.46935 * 264.44010 * 26 25 24 42 42 H 1.09001 * 109.47634 * 24.43973 * 26 25 24 43 43 H 1.09004 * 109.47370 * 144.44571 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5350 -2.2185 -0.1043 6 6 3.6002 -1.1703 0.1274 7 6 4.3973 -0.0776 0.3947 8 6 5.7191 -0.5325 0.4312 9 16 7.1470 0.4527 0.7396 10 8 6.7012 1.5886 1.4679 11 8 8.1498 -0.4329 1.2183 12 7 7.6798 1.0153 -0.7240 13 6 7.2128 2.2070 -1.2107 14 1 6.7961 2.2578 -2.2057 15 6 7.2750 3.3498 -0.4251 16 7 8.1460 3.4254 0.5588 17 14 6.1224 4.7801 -0.7642 18 1 5.2462 4.4475 -1.9161 19 1 5.2866 5.0376 0.4360 20 1 6.9185 5.9926 -1.0824 21 6 8.6508 0.2380 -1.4980 22 6 9.3394 0.9363 -2.6725 23 6 8.2753 -0.1325 -2.9342 24 6 5.7075 -1.8637 0.1819 25 7 4.4260 -2.2636 -0.0045 26 6 3.9920 -3.6318 -0.2981 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3634 -0.8900 0.5138 30 1 2.4607 1.5363 1.0233 31 1 3.1060 1.1638 -0.5932 32 1 1.5709 2.0500 -0.4302 33 1 4.0635 0.9379 0.5489 34 1 8.1420 4.1927 1.1522 35 1 9.2360 -0.4841 -0.9287 36 1 9.0703 1.9741 -2.8690 37 1 10.3775 0.6732 -2.8760 38 1 8.6136 -1.0983 -3.3098 39 1 7.3055 0.2017 -3.3030 40 1 6.5774 -2.5023 0.1384 41 1 3.8769 -3.7531 -1.3752 42 1 4.7381 -4.3364 0.0692 43 1 3.0380 -3.8237 0.1930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331474955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:56 Heat of formation + Delta-G solvation = 6.245964 kcal Electronic energy + Delta-G solvation = -29299.092582 eV Core-core repulsion = 25282.061940 eV Total energy + Delta-G solvation = -4017.030642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.25613 -39.05235 -37.07275 -35.77277 -35.57129 -34.10452 -33.18118 -32.67306 -30.52891 -30.07009 -27.75539 -26.45646 -26.06600 -24.85008 -21.72223 -21.52775 -21.02908 -20.46591 -19.41156 -18.69912 -17.32026 -16.45691 -16.22272 -15.98297 -15.85377 -15.54460 -15.10256 -14.89747 -14.62908 -14.18188 -13.89371 -13.82201 -13.46805 -13.32320 -13.07287 -12.71018 -12.62480 -12.42291 -12.31323 -12.22499 -12.16862 -11.66261 -11.36254 -11.06479 -11.01473 -10.78684 -10.58587 -10.46410 -10.34354 -10.23833 -10.03530 -9.92715 -9.71469 -9.34026 -8.84568 -8.63366 -8.57987 -8.06613 -7.42959 -6.40620 -4.14982 1.62969 1.99873 2.62337 2.67892 3.23138 3.28761 3.32973 3.33747 3.44501 4.19284 4.57556 4.67779 4.80342 4.87762 5.02644 5.10167 5.17058 5.19677 5.25219 5.27569 5.42816 5.54385 5.58016 5.61548 5.65417 5.78848 5.80500 5.84494 5.85939 5.93772 6.09173 6.33961 6.35506 6.42820 6.59498 6.79989 6.90549 7.06980 7.12843 7.26686 7.38780 7.49296 7.62092 8.14350 8.31492 8.99791 9.42551 10.64347 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011336 B = 0.005408 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.521955 B = 5176.166177 C = 6461.614790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.611 5.611 3 C 0.054 3.946 4 C 0.594 3.406 5 O -0.560 6.560 6 C -0.080 4.080 7 C -0.058 4.058 8 C -0.732 4.732 9 S 2.621 3.379 10 O -0.946 6.946 11 O -1.017 7.017 12 N -0.794 5.794 13 C -0.295 4.295 14 H 0.078 0.922 15 C 0.068 3.932 16 N -0.793 5.793 17 Si 0.908 3.092 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.281 1.281 21 C 0.096 3.904 22 C -0.165 4.165 23 C -0.212 4.212 24 C 0.120 3.880 25 N -0.412 5.412 26 C 0.066 3.934 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.171 0.829 34 H 0.277 0.723 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.178 0.822 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.684 -5.826 -3.970 11.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.343 5.343 3 C -0.089 4.089 4 C 0.385 3.615 5 O -0.441 6.441 6 C -0.191 4.191 7 C -0.084 4.084 8 C -0.816 4.816 9 S 2.718 3.282 10 O -0.935 6.935 11 O -1.007 7.007 12 N -0.617 5.617 13 C -0.439 4.439 14 H 0.095 0.905 15 C -0.149 4.149 16 N -0.427 5.427 17 Si 0.733 3.267 18 H -0.189 1.189 19 H -0.198 1.198 20 H -0.207 1.207 21 C -0.013 4.013 22 C -0.205 4.205 23 C -0.253 4.253 24 C -0.021 4.021 25 N -0.085 5.085 26 C -0.075 4.075 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.188 0.812 34 H 0.087 0.913 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.195 0.805 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.829 -6.647 -3.006 11.453 hybrid contribution -1.068 0.326 -0.443 1.201 sum -9.897 -6.321 -3.449 12.239 Atomic orbital electron populations 1.21633 0.78574 1.03058 1.01875 1.47327 1.06966 1.06207 1.73841 1.22668 0.98566 0.84513 1.03105 1.16964 0.85231 0.83371 0.75913 1.90726 1.70201 1.30967 1.52168 1.19934 0.90734 0.88291 1.20127 1.21875 0.90779 0.98051 0.97720 1.32663 1.19885 1.07015 1.22084 1.07478 0.72488 0.72040 0.76234 1.93421 1.82076 1.47646 1.70339 1.93309 1.58020 1.68273 1.81058 1.52231 1.45338 1.24351 1.39799 1.18823 1.39452 0.82757 1.02827 0.90462 1.25640 0.94589 0.98318 0.96385 1.69899 1.27622 1.30447 1.14745 0.86199 0.80847 0.80784 0.78849 1.18927 1.19797 1.20739 1.21397 0.94996 0.98004 0.86909 1.23041 0.95687 0.98967 1.02757 1.23298 1.00429 0.98860 1.02672 1.21843 0.86162 0.94977 0.99099 1.44063 1.05998 1.07636 1.50765 1.22247 1.02901 0.79618 1.02753 0.92668 0.90960 0.90694 0.91271 0.88441 0.90628 0.81210 0.91277 0.86547 0.87408 0.90077 0.90176 0.89102 0.80452 0.90722 0.89784 0.88268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 10.37 59.85 0.62 1.58 16 2 N -0.61 -8.41 3.27 -191.08 -0.63 -9.03 16 3 C 0.05 0.67 8.65 59.84 0.52 1.19 16 4 C 0.59 9.92 7.62 -12.85 -0.10 9.82 16 5 O -0.56 -10.06 14.41 5.20 0.07 -9.98 16 6 C -0.08 -1.42 6.72 -81.98 -0.55 -1.97 16 7 C -0.06 -1.11 8.53 -39.12 -0.33 -1.45 16 8 C -0.73 -15.03 6.17 -39.98 -0.25 -15.28 16 9 S 2.62 63.39 5.59 -107.50 -0.60 62.79 16 10 O -0.95 -25.53 14.23 -57.17 -0.81 -26.35 16 11 O -1.02 -26.06 16.60 -57.17 -0.95 -27.01 16 12 N -0.79 -18.59 3.02 -53.43 -0.16 -18.75 16 13 C -0.30 -7.11 7.49 -15.06 -0.11 -7.22 16 14 H 0.08 1.77 7.87 -52.49 -0.41 1.36 16 15 C 0.07 1.69 4.07 -17.43 -0.07 1.62 16 16 N -0.79 -21.47 11.79 55.49 0.65 -20.82 16 17 Si 0.91 19.15 29.61 -169.99 -5.03 14.11 16 18 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 C 0.10 1.97 6.43 -67.93 -0.44 1.53 16 22 C -0.17 -3.01 9.86 -26.69 -0.26 -3.27 16 23 C -0.21 -3.64 10.19 -26.69 -0.27 -3.91 16 24 C 0.12 2.12 11.11 -16.91 -0.19 1.94 16 25 N -0.41 -6.83 3.16 -120.24 -0.38 -7.21 16 26 C 0.07 0.83 10.52 59.85 0.63 1.46 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 29 H 0.07 0.84 7.51 -51.93 -0.39 0.45 16 30 H 0.07 0.84 7.39 -51.93 -0.38 0.46 16 31 H 0.10 1.37 5.25 -51.93 -0.27 1.10 16 32 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 33 H 0.17 3.02 4.40 -52.49 -0.23 2.79 16 34 H 0.28 7.13 8.32 -40.82 -0.34 6.79 16 35 H 0.12 2.33 7.31 -51.93 -0.38 1.95 16 36 H 0.11 2.12 7.16 -51.93 -0.37 1.75 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.09 1.61 8.09 -51.93 -0.42 1.19 16 40 H 0.18 2.68 8.06 -52.49 -0.42 2.25 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.08 0.81 8.12 -51.93 -0.42 0.38 16 43 H 0.10 1.32 6.50 -51.93 -0.34 0.98 16 LS Contribution 365.42 15.07 5.51 5.51 Total: -1.00 -33.55 365.42 -8.84 -42.39 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -5.71 Total: 8.32 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -0.81 Total: -13.96 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.51 Total: -55.81 kcal Atomic # 8 Polarization: -61.66 SS G_CDS: -1.69 Total: -63.34 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.11 kcal Atomic # 16 Polarization: 63.39 SS G_CDS: -0.60 Total: 62.79 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.55 -8.84 -42.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331474955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.635 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds