Wall clock time and date at job start Tue Mar 31 2020 23:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 119.99791 * 2 1 4 4 S 1.65594 * 120.00150 * 179.97438 * 2 1 3 5 5 O 1.42099 * 106.40261 * 203.54072 * 4 2 1 6 6 O 1.42107 * 106.40272 * 336.45595 * 4 2 1 7 7 C 1.76192 * 107.21893 * 89.99843 * 4 2 1 8 8 C 1.39801 * 126.06105 * 89.99999 * 7 4 2 9 9 C 1.38004 * 107.08654 * 179.97438 * 8 7 4 10 10 C 1.46547 * 126.23688 * 180.02562 * 9 8 7 11 11 O 1.21748 * 119.99287 * 184.67250 * 10 9 8 12 12 N 1.34771 * 120.00577 * 4.67838 * 10 9 8 13 13 C 1.36878 * 120.00107 * 183.82665 * 12 10 9 14 14 H 1.07999 * 119.99986 * 341.42230 * 13 12 10 15 15 C 1.39010 * 120.00099 * 161.41745 * 13 12 10 16 16 N 1.31400 * 119.99826 * 341.59648 * 15 13 12 17 17 Si 1.86794 * 120.00093 * 161.59884 * 15 13 12 18 18 H 1.48496 * 109.47490 * 90.00108 * 17 15 13 19 19 H 1.48506 * 109.47141 * 209.99979 * 17 15 13 20 20 H 1.48501 * 109.47260 * 330.00122 * 17 15 13 21 21 C 1.46496 * 120.00148 * 3.81858 * 12 10 9 22 22 C 1.52998 * 117.50109 * 134.72211 * 21 12 10 23 23 C 1.53000 * 117.49716 * 66.09896 * 21 12 10 24 24 N 1.37663 * 107.51421 * 0.02562 * 9 8 7 25 25 C 1.46499 * 125.67814 * 180.02562 * 24 9 8 26 26 C 1.35485 * 126.06074 * 269.69169 * 7 4 2 27 27 H 1.08996 * 109.47369 * 90.00265 * 1 2 3 28 28 H 1.09002 * 109.47337 * 329.99998 * 1 2 3 29 29 H 1.09001 * 109.47289 * 210.00345 * 1 2 3 30 30 H 1.08999 * 109.47451 * 89.99673 * 3 2 1 31 31 H 1.08995 * 109.46829 * 210.00180 * 3 2 1 32 32 H 1.09001 * 109.46853 * 329.99671 * 3 2 1 33 33 H 1.08001 * 126.45944 * 359.97438 * 8 7 4 34 34 H 0.97003 * 119.99923 * 185.12533 * 16 15 13 35 35 H 1.09002 * 115.55608 * 280.43678 * 21 12 10 36 36 H 1.08999 * 117.49712 * 0.02562 * 22 21 12 37 37 H 1.08998 * 117.49936 * 145.02244 * 22 21 12 38 38 H 1.09002 * 117.50305 * 214.98202 * 23 21 12 39 39 H 1.09004 * 117.49670 * 0.02562 * 23 21 12 40 40 H 1.09000 * 109.47708 * 84.53014 * 25 24 9 41 41 H 1.09005 * 109.47568 * 204.52945 * 25 24 9 42 42 H 1.09004 * 109.47496 * 324.52949 * 25 24 9 43 43 H 1.08003 * 125.55984 * 0.02562 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 3.5759 -1.1564 0.5450 6 8 1.4114 -2.4062 0.5456 7 6 2.5538 -1.8865 -1.6821 8 6 3.6543 -1.5328 -2.4684 9 6 3.4591 -2.0928 -3.7145 10 6 4.3617 -1.9844 -4.8639 11 8 4.0369 -2.4540 -5.9392 12 7 5.5512 -1.3650 -4.7308 13 6 6.3600 -1.1945 -5.8218 14 1 6.2083 -1.7962 -6.7057 15 6 7.3767 -0.2469 -5.7921 16 7 7.3498 0.7176 -4.9002 17 14 8.7809 -0.3448 -7.0200 18 1 8.4305 0.4325 -8.2358 19 1 10.0120 0.2187 -6.4100 20 1 9.0166 -1.7635 -7.3904 21 6 5.9785 -0.8740 -3.4183 22 6 7.4186 -1.1636 -2.9903 23 6 6.2592 -1.9142 -2.3321 24 7 2.2620 -2.7717 -3.6807 25 6 1.6694 -3.5147 -4.7956 26 6 1.7261 -2.6438 -2.4418 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 0.8900 0.5138 29 1 -0.3634 -0.8900 0.5139 30 1 2.3791 1.5835 1.0276 31 1 3.1498 1.1384 -0.5138 32 1 1.6084 2.0284 -0.5139 33 1 4.4982 -0.9340 -2.1589 34 1 8.0177 1.4207 -4.9259 35 1 5.5414 0.0744 -3.1059 36 1 8.0482 -1.7190 -3.6854 37 1 7.9292 -0.4055 -2.3964 38 1 6.0071 -1.6501 -1.3050 39 1 6.1263 -2.9639 -2.5941 40 1 2.0870 -4.5210 -4.8245 41 1 0.5894 -3.5734 -4.6599 42 1 1.8905 -3.0025 -5.7320 43 1 0.7906 -3.0731 -2.1148 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331489412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:10 Heat of formation + Delta-G solvation = 7.592577 kcal Electronic energy + Delta-G solvation = -29241.538816 eV Core-core repulsion = 25224.566567 eV Total energy + Delta-G solvation = -4016.972249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.06652 -38.49598 -36.98520 -36.25808 -36.09175 -35.56512 -33.13441 -32.68319 -31.30957 -29.12087 -28.12455 -26.50937 -25.21113 -24.62478 -22.49012 -21.89798 -21.07087 -20.77081 -19.06849 -18.43477 -17.30076 -17.27822 -16.73831 -16.00560 -15.64777 -15.32229 -15.29202 -14.99464 -14.38963 -14.31500 -14.16061 -14.10735 -13.42774 -13.14561 -13.05587 -12.79574 -12.63807 -12.46606 -12.29125 -12.13574 -12.08018 -11.87303 -11.82693 -11.56757 -11.44851 -11.34931 -11.18113 -10.87017 -10.54686 -10.50790 -10.44876 -9.98939 -9.24045 -9.13484 -8.94448 -8.77760 -8.52985 -7.90129 -7.84607 -6.46907 -3.92413 0.68776 1.98162 2.43962 3.01132 3.11905 3.18698 3.24342 3.33775 4.00456 4.05887 4.22489 4.52158 4.64910 4.74003 4.81098 5.00380 5.04162 5.09748 5.27641 5.30684 5.45464 5.50240 5.56502 5.62154 5.66300 5.78703 5.80074 5.84283 5.92793 5.99125 6.10689 6.21454 6.28974 6.43557 6.55056 6.77551 6.93783 6.96474 7.10552 7.21927 7.44659 7.46544 7.97187 8.35108 9.02949 9.26278 9.83565 10.57030 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015712 B = 0.004137 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.611996 B = 6767.365936 C = 7707.265357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.009 6.009 3 C 0.094 3.906 4 S 2.722 3.278 5 O -0.958 6.958 6 O -0.973 6.973 7 C -0.755 4.755 8 C -0.093 4.093 9 C -0.006 4.006 10 C 0.500 3.500 11 O -0.601 6.601 12 N -0.389 5.389 13 C -0.314 4.314 14 H 0.105 0.895 15 C 0.043 3.957 16 N -0.852 5.852 17 Si 0.922 3.078 18 H -0.276 1.276 19 H -0.280 1.280 20 H -0.268 1.268 21 C 0.116 3.884 22 C -0.130 4.130 23 C -0.220 4.220 24 N -0.404 5.404 25 C 0.066 3.934 26 C 0.106 3.894 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.178 0.822 34 H 0.272 0.728 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.966 0.258 8.977 14.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.847 5.847 3 C -0.051 4.051 4 S 2.813 3.187 5 O -0.948 6.948 6 O -0.963 6.963 7 C -0.851 4.851 8 C -0.117 4.117 9 C -0.119 4.119 10 C 0.290 3.710 11 O -0.490 6.490 12 N -0.104 5.104 13 C -0.442 4.442 14 H 0.122 0.878 15 C -0.164 4.164 16 N -0.488 5.488 17 Si 0.748 3.252 18 H -0.202 1.202 19 H -0.205 1.205 20 H -0.193 1.193 21 C 0.011 3.989 22 C -0.168 4.168 23 C -0.258 4.258 24 N -0.075 5.075 25 C -0.075 4.075 26 C -0.036 4.036 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.194 0.806 34 H 0.082 0.918 35 H 0.127 0.873 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.126 0.874 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.776 -0.420 8.914 13.991 hybrid contribution 0.558 0.239 -1.390 1.517 sum -10.218 -0.181 7.524 12.691 Atomic orbital electron populations 1.21549 0.78697 1.03839 1.01944 1.57368 1.15079 1.21983 1.90313 1.21483 0.96699 0.84953 1.02002 1.00854 0.72659 0.71798 0.73387 1.93552 1.39956 1.84336 1.76976 1.93511 1.66677 1.58701 1.77448 1.30726 1.07344 1.21586 1.25440 1.22032 0.97467 1.01391 0.90829 1.20820 0.89844 1.03813 0.97387 1.16523 0.81750 0.86712 0.85967 1.90600 1.75488 1.54367 1.28512 1.42813 1.13435 1.47506 1.06648 1.19628 1.09332 1.20242 0.94956 0.87757 1.25277 0.98983 0.94495 0.97631 1.69949 1.34758 1.09611 1.34507 0.85995 0.80211 0.79006 0.80001 1.20213 1.20531 1.19287 1.21236 0.99339 0.95280 0.83094 1.22867 0.91868 1.00943 1.01133 1.23803 1.05719 0.98220 0.98040 1.44197 1.16449 1.36815 1.09998 1.22295 0.97698 0.97412 0.90056 1.21548 0.98793 0.99690 0.83613 0.92845 0.90874 0.90046 0.92469 0.90464 0.91119 0.80563 0.91798 0.87250 0.89300 0.89364 0.88082 0.89636 0.90576 0.90288 0.87357 0.80726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 10.66 59.85 0.64 1.39 16 2 N -1.01 -11.68 3.58 -129.20 -0.46 -12.15 16 3 C 0.09 0.96 10.29 59.85 0.62 1.58 16 4 S 2.72 40.05 5.80 -107.50 -0.62 39.43 16 5 O -0.96 -16.52 16.94 -57.17 -0.97 -17.49 16 6 O -0.97 -15.44 16.45 -57.17 -0.94 -16.38 16 7 C -0.75 -12.28 6.17 -39.98 -0.25 -12.52 16 8 C -0.09 -1.76 7.88 -39.08 -0.31 -2.07 16 9 C -0.01 -0.12 6.68 -81.98 -0.55 -0.67 16 10 C 0.50 12.41 7.52 -12.91 -0.10 12.31 16 11 O -0.60 -16.12 14.41 5.15 0.07 -16.04 16 12 N -0.39 -9.81 2.93 -109.25 -0.32 -10.13 16 13 C -0.31 -8.41 9.02 -15.01 -0.14 -8.54 16 14 H 0.10 2.94 7.35 -52.49 -0.39 2.55 16 15 C 0.04 1.07 4.17 -17.45 -0.07 1.00 16 16 N -0.85 -21.13 10.39 55.50 0.58 -20.55 16 17 Si 0.92 19.72 29.60 -169.99 -5.03 14.69 16 18 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 C 0.12 2.56 2.27 -67.93 -0.15 2.41 16 22 C -0.13 -2.70 8.00 -26.73 -0.21 -2.92 16 23 C -0.22 -4.28 7.48 -26.73 -0.20 -4.48 16 24 N -0.40 -7.00 3.16 -120.21 -0.38 -7.38 16 25 C 0.07 0.95 10.48 59.85 0.63 1.58 16 26 C 0.11 1.60 11.11 -16.87 -0.19 1.41 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 29 H 0.08 0.72 7.02 -51.93 -0.36 0.35 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.86 7.79 -51.93 -0.40 0.45 16 32 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 33 H 0.18 3.34 3.32 -52.49 -0.17 3.16 16 34 H 0.27 6.37 8.32 -40.82 -0.34 6.03 16 35 H 0.11 2.43 7.29 -51.93 -0.38 2.05 16 36 H 0.09 1.97 7.50 -51.93 -0.39 1.58 16 37 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 38 H 0.10 1.80 7.58 -51.93 -0.39 1.41 16 39 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 42 H 0.11 1.81 6.54 -51.93 -0.34 1.47 16 43 H 0.18 1.94 8.06 -52.48 -0.42 1.51 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -33.31 362.07 -8.66 -41.97 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.76 Total: 8.10 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -0.28 Total: -9.53 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.59 Total: -50.20 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -1.83 Total: -49.91 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Atomic # 16 Polarization: 40.05 SS G_CDS: -0.62 Total: 39.43 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.31 -8.66 -41.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331489412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.562 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds