Wall clock time and date at job start Tue Mar 31 2020 23:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47488 * 2 1 4 4 C 1.50697 * 109.47191 * 120.00281 * 2 1 3 5 5 H 1.07997 * 120.00596 * 120.00060 * 4 2 1 6 6 C 1.37883 * 119.99970 * 299.99681 * 4 2 1 7 7 N 1.31518 * 119.99428 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 120.00219 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47450 * 90.00312 * 8 6 4 10 10 H 1.48507 * 109.47041 * 210.00166 * 8 6 4 11 11 H 1.48500 * 109.47261 * 329.99793 * 8 6 4 12 12 N 1.46507 * 109.47289 * 240.00012 * 2 1 3 13 13 S 1.65599 * 119.99951 * 94.99977 * 12 2 1 14 14 O 1.42100 * 106.40257 * 311.46201 * 13 12 2 15 15 O 1.42096 * 106.40007 * 178.54194 * 13 12 2 16 16 C 1.76198 * 107.21816 * 65.00141 * 13 12 2 17 17 C 1.35455 * 126.06536 * 89.97745 * 16 13 12 18 18 N 1.35538 * 108.86998 * 180.02562 * 17 16 13 19 19 H 0.97000 * 125.67555 * 180.02562 * 18 17 16 20 20 C 1.37647 * 108.64257 * 359.97438 * 18 17 16 21 21 C 1.46681 * 126.23079 * 180.02562 * 20 18 17 22 22 O 1.21692 * 119.99846 * 179.97438 * 21 20 18 23 23 N 1.34780 * 120.00125 * 359.96271 * 21 20 18 24 24 C 1.47023 * 125.64310 * 359.68964 * 23 21 20 25 25 C 1.54319 * 107.27074 * 180.96901 * 24 23 21 26 26 C 1.55156 * 102.86600 * 22.52672 * 25 24 23 27 27 C 1.47418 * 125.64942 * 179.97438 * 23 21 20 28 28 C 1.37873 * 107.53549 * 0.02562 * 20 18 17 29 29 H 1.09007 * 109.46765 * 59.99904 * 1 2 3 30 30 H 1.08996 * 109.47488 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47103 * 300.00346 * 1 2 3 32 32 H 0.97008 * 119.99801 * 180.02562 * 7 6 4 33 33 H 0.97003 * 119.99683 * 275.00409 * 12 2 1 34 34 H 1.08000 * 125.56285 * 359.73052 * 17 16 13 35 35 H 1.09000 * 109.88495 * 300.51352 * 24 23 21 36 36 H 1.08998 * 109.88248 * 61.68372 * 24 23 21 37 37 H 1.08995 * 110.92476 * 264.10929 * 25 24 23 38 38 H 1.09005 * 110.58562 * 140.78485 * 25 24 23 39 39 H 1.08989 * 111.00704 * 206.22574 * 26 25 24 40 40 H 1.09007 * 111.03508 * 82.38666 * 26 25 24 41 41 H 1.08996 * 110.36920 * 274.67165 * 27 23 21 42 42 H 1.08998 * 110.36790 * 36.88545 * 27 23 21 43 43 H 1.07997 * 126.45516 * 180.02562 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3225 -1.1195 4.0079 9 1 3.6304 -0.5440 4.4118 10 1 1.3444 -0.9490 5.1122 11 1 2.4879 -2.5654 3.7122 12 7 2.0183 -0.6906 -1.1962 13 16 2.4122 0.1772 -2.5505 14 8 1.3247 1.0593 -2.7922 15 8 2.8776 -0.7635 -3.5085 16 6 3.7928 1.1910 -2.1371 17 6 5.0979 0.8511 -2.2635 18 7 5.8634 1.8882 -1.8445 19 1 6.8332 1.9061 -1.8309 20 6 5.0357 2.9119 -1.4427 21 6 5.4597 4.2155 -0.9206 22 8 4.6267 5.0418 -0.5979 23 7 6.7719 4.4979 -0.7981 24 6 7.8787 3.5935 -1.1425 25 6 9.1931 4.3325 -0.8142 26 6 8.7446 5.3876 0.2311 27 6 7.3348 5.7625 -0.2910 28 6 3.7355 2.4890 -1.6203 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.7087 1.1613 3.4844 33 1 2.1109 -1.6562 -1.1949 34 1 5.4680 -0.0939 -2.6329 35 1 7.8079 2.6796 -0.5528 36 1 7.8454 3.3549 -2.2055 37 1 9.5992 4.8174 -1.7019 38 1 9.9209 3.6460 -0.3814 39 1 9.4072 6.2529 0.2220 40 1 8.6888 4.9512 1.2284 41 1 7.4102 6.4938 -1.0957 42 1 6.7199 6.1534 0.5196 43 1 2.8414 3.0540 -1.4020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332679365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:00 Heat of formation + Delta-G solvation = -56.461554 kcal Electronic energy + Delta-G solvation = -28176.695975 eV Core-core repulsion = 24156.946131 eV Total energy + Delta-G solvation = -4019.749844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.49785 -39.62828 -37.50995 -36.51818 -35.31156 -35.11993 -32.39139 -32.11098 -31.25365 -29.81354 -28.97599 -28.15948 -25.14081 -24.69274 -22.28191 -21.82218 -21.24708 -20.83569 -20.23034 -18.64565 -18.06486 -17.17775 -16.92471 -16.46131 -16.02064 -15.54132 -15.28553 -15.11226 -14.80815 -14.46694 -14.05109 -14.02590 -13.83578 -13.50716 -13.27144 -12.97566 -12.65639 -12.53342 -12.44440 -12.10177 -11.86044 -11.67148 -11.60683 -11.46546 -11.33546 -11.26065 -11.09764 -10.95295 -10.75968 -10.51619 -10.20204 -10.18285 -10.05328 -9.38919 -9.10824 -9.02844 -8.54980 -8.37024 -8.19945 -6.06848 -4.14945 1.22549 1.42232 2.21751 2.60096 2.99850 3.25648 3.30469 3.33126 3.35197 3.96970 3.98740 4.07609 4.36668 4.38922 4.49488 4.56061 4.72211 4.79472 4.87682 4.96999 5.02839 5.23961 5.24567 5.36712 5.37697 5.48334 5.57165 5.62096 5.69283 5.93684 6.06823 6.44849 6.47648 6.76322 6.93575 7.15270 7.16810 7.20385 7.24283 7.66351 7.79245 7.93074 8.00381 8.12799 8.36150 8.88104 9.50715 10.98688 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009754 B = 0.004140 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.998411 B = 6762.032214 C = 8426.388161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.275 3.725 3 H 0.044 0.956 4 C -0.525 4.525 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.897 3.103 9 H -0.283 1.283 10 H -0.285 1.285 11 H -0.274 1.274 12 N -1.101 6.101 13 S 2.715 3.285 14 O -0.964 6.964 15 O -0.991 6.991 16 C -0.742 4.742 17 C 0.144 3.856 18 N -0.537 5.537 19 H 0.417 0.583 20 C -0.070 4.070 21 C 0.610 3.390 22 O -0.517 6.517 23 N -0.626 5.626 24 C 0.085 3.915 25 C -0.129 4.129 26 C -0.134 4.134 27 C 0.107 3.893 28 C 0.002 3.998 29 H 0.026 0.974 30 H 0.031 0.969 31 H 0.091 0.909 32 H 0.264 0.736 33 H 0.407 0.593 34 H 0.189 0.811 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.454 4.999 -7.302 20.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.171 3.829 3 H 0.061 0.939 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.521 5.521 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.862 5.862 13 S 2.802 3.198 14 O -0.953 6.953 15 O -0.981 6.981 16 C -0.834 4.834 17 C 0.001 3.999 18 N -0.136 5.136 19 H 0.260 0.740 20 C -0.181 4.181 21 C 0.400 3.600 22 O -0.392 6.392 23 N -0.362 5.362 24 C -0.039 4.039 25 C -0.167 4.167 26 C -0.172 4.172 27 C -0.015 4.015 28 C -0.024 4.024 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.241 0.759 34 H 0.206 0.794 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 17.577 5.863 -7.748 20.084 hybrid contribution 1.517 -0.704 1.471 2.227 sum 19.094 5.159 -6.276 20.751 Atomic orbital electron populations 1.22236 0.98207 0.99812 1.01539 1.18502 0.91343 0.92286 0.80748 0.93861 1.21281 1.31940 1.13120 0.90104 0.91929 1.24914 0.94956 0.95030 0.98969 1.69887 1.35927 1.22509 1.23811 0.86519 0.78476 0.79920 0.82556 1.20879 1.21114 1.19871 1.55565 1.80912 1.18251 1.31460 1.01019 0.73307 0.72878 0.72548 1.93556 1.50514 1.67080 1.84192 1.93493 1.82910 1.62022 1.59667 1.31356 1.15102 1.12018 1.24898 1.21843 0.89542 0.92461 0.96049 1.42828 1.09313 1.12809 1.48688 0.74048 1.20312 0.91036 0.90913 1.15818 1.16632 0.80467 0.85252 0.77632 1.90883 1.50649 1.47905 1.49783 1.48363 1.04650 1.17059 1.66132 1.22241 0.87423 0.94241 0.99956 1.22615 0.95590 0.98432 1.00013 1.22819 0.95704 0.99484 0.99238 1.22243 0.93931 0.86105 0.99257 1.21006 0.95681 0.92278 0.93430 0.95472 0.95021 0.89091 0.92614 0.75933 0.79420 0.91162 0.91336 0.90085 0.89579 0.89443 0.90249 0.91215 0.89837 0.81793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 9.29 37.16 0.35 -3.56 16 2 C 0.28 6.71 2.76 -69.08 -0.19 6.52 16 3 H 0.04 1.13 7.65 -51.93 -0.40 0.73 16 4 C -0.52 -13.65 8.76 -34.44 -0.30 -13.96 16 5 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.88 -24.67 11.32 55.43 0.63 -24.04 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 N -1.10 -22.22 5.46 -5.88 -0.03 -22.25 16 13 S 2.72 51.59 5.79 -107.50 -0.62 50.97 16 14 O -0.96 -21.30 17.13 -57.17 -0.98 -22.28 16 15 O -0.99 -18.96 17.85 -57.17 -1.02 -19.98 16 16 C -0.74 -12.82 6.00 -39.98 -0.24 -13.06 16 17 C 0.14 1.93 11.64 -16.91 -0.20 1.74 16 18 N -0.54 -6.49 5.61 -9.39 -0.05 -6.54 16 19 H 0.42 3.35 4.92 -40.82 -0.20 3.15 16 20 C -0.07 -1.13 6.89 -81.98 -0.56 -1.69 16 21 C 0.61 9.83 7.82 -12.85 -0.10 9.73 16 22 O -0.52 -10.26 17.14 5.20 0.09 -10.17 16 23 N -0.63 -7.26 3.33 -172.05 -0.57 -7.83 16 24 C 0.09 0.63 5.10 -3.07 -0.02 0.61 16 25 C -0.13 -0.63 6.95 -24.90 -0.17 -0.80 16 26 C -0.13 -0.80 7.08 -24.57 -0.17 -0.98 16 27 C 0.11 1.00 6.91 -2.52 -0.02 0.98 16 28 C 0.00 0.04 10.25 -39.12 -0.40 -0.37 16 29 H 0.03 0.63 7.64 -51.93 -0.40 0.24 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.41 7.37 8.83 -34.47 -0.30 7.06 16 34 H 0.19 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.07 0.49 7.11 -51.93 -0.37 0.12 16 36 H 0.07 0.41 7.21 -51.93 -0.37 0.04 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.36 8.14 -51.94 -0.42 -0.06 16 40 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.90 8.03 -51.93 -0.42 0.48 16 43 H 0.16 3.22 8.06 -52.49 -0.42 2.79 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -36.06 367.81 -9.87 -45.93 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.70 Total: 8.24 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -2.12 Total: -13.21 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.03 Total: -60.67 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -1.91 Total: -52.43 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 51.59 SS G_CDS: -0.62 Total: 50.97 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.06 -9.87 -45.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332679365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.534 kcal (2) G-P(sol) polarization free energy of solvation -36.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds