Wall clock time and date at job start Tue Mar 31 2020 23:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 S 1.65605 * 120.00032 * 265.00209 * 12 2 1 14 14 O 1.42101 * 106.40031 * 178.54209 * 13 12 2 15 15 O 1.42106 * 106.40103 * 311.45962 * 13 12 2 16 16 C 1.76197 * 107.21776 * 65.00008 * 13 12 2 17 17 C 1.35454 * 126.06468 * 90.02341 * 16 13 12 18 18 N 1.35537 * 108.86800 * 179.97438 * 17 16 13 19 19 H 0.97006 * 125.67129 * 179.97438 * 18 17 16 20 20 C 1.37649 * 108.64726 * 0.02562 * 18 17 16 21 21 C 1.46670 * 126.23336 * 179.97438 * 20 18 17 22 22 O 1.21697 * 120.00044 * 180.02562 * 21 20 18 23 23 N 1.34780 * 119.99994 * 0.02562 * 21 20 18 24 24 C 1.47012 * 125.64998 * 359.69042 * 23 21 20 25 25 C 1.54316 * 107.27802 * 180.96550 * 24 23 21 26 26 C 1.55162 * 102.85944 * 22.53109 * 25 24 23 27 27 C 1.47424 * 125.64434 * 180.02562 * 23 21 20 28 28 C 1.37879 * 107.52877 * 359.74897 * 20 18 17 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 31 31 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 0.96997 * 120.00169 * 85.00800 * 12 2 1 34 34 H 1.08000 * 125.56862 * 359.94619 * 17 16 13 35 35 H 1.09002 * 109.88417 * 300.51899 * 24 23 21 36 36 H 1.09004 * 109.88203 * 61.67854 * 24 23 21 37 37 H 1.08989 * 110.92862 * 264.11348 * 25 24 23 38 38 H 1.09000 * 110.58618 * 140.78094 * 25 24 23 39 39 H 1.08997 * 110.99911 * 206.22640 * 26 25 24 40 40 H 1.08997 * 111.03941 * 82.39034 * 26 25 24 41 41 H 1.08998 * 110.36940 * 274.66893 * 27 23 21 42 42 H 1.08994 * 110.37238 * 36.88457 * 27 23 21 43 43 H 1.08005 * 126.45333 * 180.23614 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 16 2.4121 0.1774 2.5505 14 8 2.8123 -0.7696 3.5316 15 8 3.2436 1.2445 2.1155 16 6 0.9274 0.9149 3.1474 17 6 0.0667 0.3666 4.0381 18 7 -0.9549 1.2316 4.2500 19 1 -1.7077 1.0835 4.8437 20 6 -0.7473 2.3547 3.4816 21 6 -1.6182 3.5329 3.4153 22 8 -1.3240 4.4672 2.6931 23 7 -2.7443 3.5810 4.1544 24 6 -3.2207 2.5253 5.0599 25 6 -4.5543 3.0094 5.6667 26 6 -5.0430 4.0591 4.6338 27 6 -3.7059 4.6981 4.1833 28 6 0.4312 2.1723 2.7896 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.7088 1.1611 -3.4845 33 1 2.1110 -1.6560 1.1950 34 1 0.1764 -0.6019 4.5032 35 1 -3.3783 1.6020 4.5024 36 1 -2.4921 2.3615 5.8540 37 1 -4.3938 3.4722 6.6404 38 1 -5.2627 2.1845 5.7427 39 1 -5.6905 4.7986 5.1048 40 1 -5.5476 3.5781 3.7959 41 1 -3.3870 5.4548 4.9000 42 1 -3.8084 5.1363 3.1905 43 1 0.8845 2.8685 2.0994 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332679366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:02 Heat of formation + Delta-G solvation = -84.352635 kcal Electronic energy + Delta-G solvation = -28141.681517 eV Core-core repulsion = 24120.722225 eV Total energy + Delta-G solvation = -4020.959292 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.67711 -40.62361 -38.51432 -38.13507 -37.18550 -36.76462 -34.07580 -33.34302 -32.36702 -30.74389 -30.05752 -29.84598 -27.20707 -25.63472 -23.33108 -22.81819 -22.70211 -22.00935 -21.40932 -20.08884 -19.28621 -18.94018 -17.79208 -17.69834 -17.49124 -17.09604 -16.68027 -16.51651 -16.19282 -15.77865 -15.33007 -15.00769 -14.87336 -14.61234 -14.46827 -14.21061 -13.97676 -13.95129 -13.73556 -13.46553 -13.38337 -13.09865 -13.02035 -12.95464 -12.76533 -12.47482 -12.36685 -12.24047 -12.19012 -12.13071 -11.93847 -11.67634 -11.44841 -11.11293 -10.62425 -10.55665 -10.05058 -9.99806 -9.54099 -8.10319 -6.25233 -0.31602 0.20828 0.90562 1.46501 1.49029 1.56121 1.60545 1.98469 2.05984 2.39954 2.52433 2.98024 3.19016 3.29454 3.47240 3.52827 3.73679 3.94743 4.00226 4.14002 4.16589 4.28284 4.39129 4.45706 4.62665 4.71800 4.74243 4.85047 4.87769 4.95603 5.06249 5.10130 5.10608 5.20385 5.21331 5.29269 5.42970 5.61963 5.79803 6.09758 6.17241 6.18635 6.26088 6.50852 6.84602 6.87161 7.44207 8.94532 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013335 B = 0.003391 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.260908 B = 8255.187881 C = 9540.174495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.276 3.724 3 H 0.013 0.987 4 C -0.542 4.542 5 H 0.069 0.931 6 C 0.014 3.986 7 N -0.916 5.916 8 Si 0.964 3.036 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.264 1.264 12 N -1.099 6.099 13 S 2.732 3.268 14 O -0.986 6.986 15 O -1.010 7.010 16 C -0.765 4.765 17 C 0.176 3.824 18 N -0.508 5.508 19 H 0.440 0.560 20 C -0.065 4.065 21 C 0.599 3.401 22 O -0.573 6.573 23 N -0.620 5.620 24 C 0.068 3.932 25 C -0.118 4.118 26 C -0.125 4.125 27 C 0.094 3.906 28 C -0.036 4.036 29 H 0.043 0.957 30 H 0.034 0.966 31 H 0.061 0.939 32 H 0.264 0.736 33 H 0.418 0.582 34 H 0.238 0.762 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.212 -0.576 21.348 26.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.171 3.829 3 H 0.031 0.969 4 C -0.581 4.581 5 H 0.087 0.913 6 C -0.186 4.186 7 N -0.555 5.555 8 Si 0.789 3.211 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.189 1.189 12 N -0.859 5.859 13 S 2.823 3.177 14 O -0.977 6.977 15 O -1.000 7.000 16 C -0.860 4.860 17 C 0.030 3.970 18 N -0.109 5.109 19 H 0.288 0.712 20 C -0.176 4.176 21 C 0.389 3.611 22 O -0.453 6.453 23 N -0.353 5.353 24 C -0.054 4.054 25 C -0.155 4.155 26 C -0.163 4.163 27 C -0.027 4.027 28 C -0.063 4.063 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.253 0.747 34 H 0.255 0.745 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.489 0.391 21.277 26.320 hybrid contribution -0.283 -0.118 -1.243 1.280 sum -15.772 0.273 20.034 25.499 Atomic orbital electron populations 1.22051 0.97641 1.00045 1.00459 1.18212 0.91396 0.91363 0.81969 0.96888 1.21616 1.31987 1.13432 0.91073 0.91327 1.25743 0.95133 0.95707 1.02042 1.70023 1.37189 1.23843 1.24429 0.85529 0.78571 0.78862 0.78160 1.21148 1.20033 1.18892 1.55273 1.84013 1.19449 1.27204 1.00142 0.73391 0.72268 0.71881 1.93488 1.82144 1.62152 1.59883 1.93505 1.66001 1.58226 1.82267 1.30851 1.26891 1.08710 1.19574 1.22513 0.84697 0.96029 0.93716 1.42744 1.21246 1.12856 1.34080 0.71207 1.20142 1.00397 0.91458 1.05636 1.16772 0.80093 0.84918 0.79307 1.90855 1.73742 1.38729 1.41982 1.48470 1.21898 1.21341 1.43589 1.22683 0.98867 0.90950 0.92881 1.22658 0.93857 1.00090 0.98912 1.22807 0.94537 0.99341 0.99646 1.22493 0.88923 0.89380 1.01948 1.20846 0.93310 0.94823 0.97280 0.93832 0.94725 0.92038 0.92716 0.74703 0.74544 0.89991 0.89401 0.88576 0.87159 0.87162 0.90613 0.90441 0.92218 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.69 9.29 71.98 0.67 -6.02 16 2 C 0.28 13.90 2.89 44.24 0.13 14.03 16 3 H 0.01 0.77 7.50 -2.38 -0.02 0.75 16 4 C -0.54 -29.40 8.76 25.60 0.22 -29.18 16 5 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 6 C 0.01 0.75 5.30 84.66 0.45 1.20 16 7 N -0.92 -53.15 11.32 21.45 0.24 -52.91 16 8 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 9 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 12 N -1.10 -44.65 5.46 -172.53 -0.94 -45.59 16 13 S 2.73 104.88 5.86 -56.49 -0.33 104.55 16 14 O -0.99 -36.19 17.85 -128.00 -2.28 -38.48 16 15 O -1.01 -48.67 17.21 -128.00 -2.20 -50.87 16 16 C -0.76 -24.87 5.23 22.01 0.12 -24.76 16 17 C 0.18 3.76 11.64 83.48 0.97 4.73 16 18 N -0.51 -9.59 5.61 -183.62 -1.03 -10.63 16 19 H 0.44 4.17 4.92 -92.70 -0.46 3.72 16 20 C -0.06 -1.92 6.89 40.35 0.28 -1.65 16 21 C 0.60 18.69 7.82 86.44 0.68 19.36 16 22 O -0.57 -23.56 17.14 -4.34 -0.07 -23.63 16 23 N -0.62 -12.67 3.33 -816.58 -2.72 -15.39 16 24 C 0.07 0.64 5.10 86.73 0.44 1.08 16 25 C -0.12 -0.47 6.95 31.78 0.22 -0.25 16 26 C -0.13 -0.96 7.08 31.98 0.23 -0.74 16 27 C 0.09 1.56 6.91 86.85 0.60 2.16 16 28 C -0.04 -1.34 9.59 22.57 0.22 -1.12 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.03 1.45 6.23 -2.39 -0.01 1.43 16 31 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 32 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 33 H 0.42 14.81 8.83 -96.75 -0.85 13.96 16 34 H 0.24 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.08 0.61 7.11 -2.39 -0.02 0.60 16 36 H 0.09 0.54 7.21 -2.39 -0.02 0.52 16 37 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.06 1.27 8.03 -2.39 -0.02 1.25 16 43 H 0.13 5.61 8.06 -2.91 -0.02 5.59 16 Total: -1.00 -85.11 365.10 -2.34 -87.45 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -0.25 Total: 21.16 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 5.22 Total: -21.13 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -4.45 Total: -124.51 kcal Atomic # 8 Polarization: -108.42 SS G_CDS: -4.56 Total: -112.98 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 104.88 SS G_CDS: -0.33 Total: 104.55 kcal Total: -85.11 -2.34 -87.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332679366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.101 kcal (2) G-P(sol) polarization free energy of solvation -85.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds