Wall clock time and date at job start Tue Mar 31 2020 23:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.47470 * 2 1 4 4 C 1.46500 * 119.99680 * 274.99330 * 3 2 1 5 5 C 1.52995 * 109.47572 * 275.00318 * 4 3 2 6 6 C 1.47200 * 109.47620 * 180.02562 * 5 4 3 7 7 N 5.62364 * 113.41340 * 306.62220 * 2 1 3 8 8 S 1.65601 * 120.00201 * 94.99643 * 3 2 1 9 9 O 1.42103 * 106.39886 * 156.45921 * 8 3 2 10 10 O 1.42095 * 106.40145 * 23.54046 * 8 3 2 11 11 N 1.65596 * 107.21751 * 269.99717 * 8 3 2 12 12 C 1.46494 * 120.00265 * 269.99699 * 11 8 3 13 13 C 1.50697 * 109.47607 * 265.00283 * 12 11 8 14 14 H 1.08003 * 119.99367 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00325 * 180.02562 * 13 12 11 16 16 N 1.31506 * 120.00248 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99823 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47243 * 89.99955 * 17 15 13 19 19 H 1.48494 * 109.47087 * 210.00326 * 17 15 13 20 20 H 1.48502 * 109.47238 * 329.99945 * 17 15 13 21 21 C 1.46505 * 119.99655 * 90.00120 * 11 8 3 22 22 C 1.50703 * 109.47064 * 95.00018 * 21 11 8 23 23 C 1.34515 * 125.79060 * 89.99944 * 22 21 11 24 24 C 1.41380 * 106.83832 * 179.97438 * 23 22 21 25 25 C 1.34506 * 106.84493 * 359.97438 * 24 23 22 26 26 O 1.34306 * 125.78568 * 269.69282 * 22 21 11 27 27 H 1.09005 * 109.46189 * 60.00006 * 1 2 3 28 28 H 1.08996 * 109.47420 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46680 * 300.00852 * 1 2 3 30 30 H 1.09003 * 109.47148 * 239.98955 * 2 1 3 31 31 H 1.09011 * 109.46600 * 120.00082 * 2 1 3 32 32 H 1.09004 * 109.46832 * 35.00448 * 4 3 2 33 33 H 1.09002 * 109.47104 * 154.99736 * 4 3 2 34 34 H 1.09008 * 109.46759 * 300.00249 * 5 4 3 35 35 H 1.09002 * 109.47381 * 59.99588 * 5 4 3 36 36 H 1.08998 * 109.46996 * 25.00920 * 12 11 8 37 37 H 1.09004 * 109.47165 * 144.99843 * 12 11 8 38 38 H 0.96996 * 120.00154 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.47068 * 214.99986 * 21 11 8 40 40 H 1.09001 * 109.47372 * 335.00074 * 21 11 8 41 41 H 1.07996 * 126.58016 * 0.03378 * 23 22 21 42 42 H 1.08006 * 126.57610 * 179.97438 * 24 23 22 43 43 H 1.08005 * 125.79499 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.1585 2.1085 -1.2640 5 6 3.5154 1.7836 -1.8918 6 6 3.6564 2.5149 -3.1615 7 7 3.7647 3.0785 -4.1418 8 16 2.4123 2.1202 1.4287 9 8 3.3286 3.1569 1.1048 10 8 2.7095 1.0800 2.3499 11 7 1.0433 2.8643 1.9893 12 6 0.7520 4.2477 1.6053 13 6 1.2631 5.1831 2.6707 14 1 1.7561 4.7866 3.5460 15 6 1.1014 6.5449 2.5279 16 7 1.5479 7.3611 3.4573 17 14 0.2494 7.2305 1.0135 18 1 -1.2094 7.3349 1.2709 19 1 0.7952 8.5767 0.7053 20 1 0.4850 6.3250 -0.1397 21 6 0.1235 2.1392 2.8693 22 6 0.4498 2.4544 4.3064 23 6 -0.0716 3.4623 5.0286 24 6 0.5086 3.3867 6.3157 25 6 1.3493 2.3369 6.3032 26 8 1.3062 1.7730 5.0850 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.3620 1.8095 -1.9453 33 1 2.0924 3.1801 -1.0757 34 1 4.3119 2.0826 -1.2103 35 1 3.5815 0.7120 -2.0800 36 1 1.2424 4.4729 0.6583 37 1 -0.3250 4.3754 1.4960 38 1 1.4338 8.3191 3.3570 39 1 -0.9009 2.4433 2.6541 40 1 0.2274 1.0674 2.6998 41 1 -0.7952 4.1892 4.6905 42 1 0.3141 4.0457 7.1491 43 1 1.9537 2.0016 7.1332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336893968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:40 Heat of formation + Delta-G solvation = -19.245853 kcal Electronic energy + Delta-G solvation = -29271.610857 eV Core-core repulsion = 25253.474807 eV Total energy + Delta-G solvation = -4018.136050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.83688 -37.73615 -36.90610 -36.29152 -36.10386 -35.31342 -32.53204 -32.32951 -32.23331 -30.08728 -29.33497 -27.72394 -24.85954 -24.48536 -22.53620 -21.96763 -21.03594 -19.98777 -18.62250 -17.87139 -17.64071 -17.13103 -16.83350 -16.53685 -16.11074 -15.44361 -15.03040 -14.88962 -14.38773 -14.27865 -14.12688 -13.96080 -13.52252 -13.20937 -12.95696 -12.89585 -12.68385 -12.47201 -12.37070 -12.18590 -12.10831 -11.97983 -11.93914 -11.72229 -11.63527 -11.58637 -11.39672 -11.24069 -11.06741 -10.83174 -10.73695 -10.57927 -10.29699 -9.61553 -9.26004 -9.11816 -8.60070 -8.40797 -7.77637 -6.06659 -4.05372 0.89495 2.35954 2.64195 2.71344 3.14548 3.22710 3.29886 3.33776 3.38494 3.63456 3.81546 4.03654 4.36794 4.61913 4.69156 4.81749 4.91883 5.05233 5.14714 5.18195 5.22324 5.23874 5.29952 5.40092 5.61976 5.65310 5.68402 5.72999 5.75201 5.80387 6.01052 6.05433 6.15272 6.46549 6.48333 6.60971 6.66726 6.73740 6.94371 7.17771 7.23263 7.46795 7.55124 7.82980 8.49146 9.03293 9.51620 11.06413 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009574 B = 0.005832 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.006956 B = 4799.612524 C = 6745.509359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.108 3.892 3 N -1.010 6.010 4 C 0.129 3.871 5 C -0.050 4.050 6 C 0.214 3.786 7 N -0.437 5.437 8 S 2.772 3.228 9 O -0.954 6.954 10 O -0.975 6.975 11 N -0.982 5.982 12 C 0.225 3.775 13 C -0.524 4.524 14 H 0.083 0.917 15 C 0.076 3.924 16 N -0.891 5.891 17 Si 0.865 3.135 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.266 1.266 21 C 0.218 3.782 22 C -0.037 4.037 23 C -0.156 4.156 24 C -0.212 4.212 25 C -0.055 4.055 26 O -0.169 6.169 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.263 0.737 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.453 -16.482 -4.171 17.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.017 4.017 3 N -0.847 5.847 4 C 0.002 3.998 5 C -0.092 4.092 6 C -0.104 4.104 7 N -0.115 5.115 8 S 2.781 3.219 9 O -0.937 6.937 10 O -0.959 6.959 11 N -0.822 5.822 12 C 0.102 3.898 13 C -0.563 4.563 14 H 0.101 0.899 15 C -0.127 4.127 16 N -0.530 5.530 17 Si 0.693 3.307 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.191 1.191 21 C 0.092 3.908 22 C -0.089 4.089 23 C -0.176 4.176 24 C -0.232 4.232 25 C -0.123 4.123 26 O -0.065 6.065 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.258 -15.703 -5.315 16.896 hybrid contribution -0.808 0.821 -0.268 1.183 sum -4.066 -14.882 -5.583 16.407 Atomic orbital electron populations 1.22315 0.96130 1.02332 1.02940 1.21378 0.94366 0.81806 1.04199 1.58400 1.81796 1.22612 1.21919 1.21075 0.95048 0.97803 0.85923 1.19807 1.01689 0.99854 0.87842 1.28940 0.93437 0.93662 0.94367 1.81227 1.08361 1.09432 1.12436 1.02474 0.73830 0.72884 0.72706 1.93649 1.59712 1.56465 1.83890 1.93582 1.83215 1.58232 1.60884 1.57775 1.42257 1.23544 1.58590 1.19534 0.96806 0.76854 0.96560 1.21357 1.38334 0.90312 1.06267 0.89861 1.24830 0.95280 0.96865 0.95737 1.69887 1.46147 1.03271 1.33662 0.87036 0.80039 0.79302 0.84370 1.20168 1.21028 1.19051 1.19389 0.94521 0.95618 0.81302 1.22706 0.95628 0.96360 0.94187 1.21509 1.04126 0.98824 0.93186 1.21776 1.01730 1.00427 0.99217 1.23854 1.03657 0.97635 0.87159 1.84052 1.52261 1.49288 1.20864 0.92036 0.91478 0.92102 0.90175 0.88824 0.89458 0.88782 0.86456 0.86942 0.94898 0.95226 0.92664 0.87800 0.89870 0.83492 0.84188 0.78991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 10.24 37.16 0.38 -0.96 16 2 C 0.11 0.91 6.40 -4.04 -0.03 0.89 16 3 N -1.01 -11.71 2.84 -114.37 -0.32 -12.04 16 4 C 0.13 1.33 5.30 -4.04 -0.02 1.31 16 5 C -0.05 -0.45 6.02 -29.52 -0.18 -0.63 16 6 C 0.21 2.51 15.43 -20.76 -0.32 2.19 16 7 N -0.44 -6.41 18.54 42.15 0.78 -5.63 16 8 S 2.77 48.44 5.97 -107.50 -0.64 47.80 16 9 O -0.95 -20.32 16.08 -57.17 -0.92 -21.24 16 10 O -0.98 -18.36 15.66 -57.17 -0.90 -19.25 16 11 N -0.98 -17.83 2.84 -116.95 -0.33 -18.16 16 12 C 0.23 4.79 4.19 -5.20 -0.02 4.77 16 13 C -0.52 -13.92 8.84 -34.44 -0.30 -14.23 16 14 H 0.08 2.50 7.07 -52.48 -0.37 2.13 16 15 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 16 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 17 Si 0.87 20.30 27.47 -169.99 -4.67 15.63 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 21 C 0.22 3.41 5.22 -5.19 -0.03 3.39 16 22 C -0.04 -0.69 6.21 -35.62 -0.22 -0.91 16 23 C -0.16 -3.00 9.43 -39.70 -0.37 -3.37 16 24 C -0.21 -3.79 10.91 -39.71 -0.43 -4.22 16 25 C -0.05 -0.92 12.09 29.41 0.36 -0.57 16 26 O -0.17 -3.25 10.65 5.68 0.06 -3.18 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.51 6.08 -51.93 -0.32 0.20 16 30 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 31 H 0.09 0.88 6.92 -51.92 -0.36 0.52 16 32 H 0.09 0.66 8.11 -51.93 -0.42 0.24 16 33 H 0.09 1.17 7.32 -51.93 -0.38 0.79 16 34 H 0.12 1.15 8.14 -51.92 -0.42 0.73 16 35 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.71 6.38 -51.93 -0.33 0.38 16 37 H 0.03 0.58 7.43 -51.93 -0.39 0.20 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.10 1.34 8.00 -51.93 -0.42 0.93 16 40 H 0.08 1.08 6.36 -51.93 -0.33 0.75 16 41 H 0.15 2.83 8.06 -52.49 -0.42 2.41 16 42 H 0.14 2.21 8.06 -52.48 -0.42 1.79 16 43 H 0.19 2.41 8.06 -52.48 -0.42 1.98 16 LS Contribution 377.36 15.07 5.69 5.69 Total: -1.00 -36.36 377.36 -7.63 -43.98 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.86 Total: 2.57 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -1.29 Total: -10.35 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: 0.90 Total: -61.64 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -1.75 Total: -43.68 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.67 Total: 15.63 kcal Atomic # 16 Polarization: 48.44 SS G_CDS: -0.64 Total: 47.80 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.36 -7.63 -43.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336893968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.738 kcal (2) G-P(sol) polarization free energy of solvation -36.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds